-
2
-
-
84355163065
-
Analysis of bacterial core communities in the central Baltic by comparative RNA-DNA-based fingerprinting provides links to structure-function relationships
-
Brettar I., Christen R., Hofle M.G. Analysis of bacterial core communities in the central Baltic by comparative RNA-DNA-based fingerprinting provides links to structure-function relationships. ISME J. 2012, 6(1):195-212.
-
(2012)
ISME J.
, vol.6
, Issue.1
, pp. 195-212
-
-
Brettar, I.1
Christen, R.2
Hofle, M.G.3
-
3
-
-
79961239913
-
Activity of abundant and rare bacteria in a coastal ocean
-
Campbell B.J., Yu L.Y., Heidelberg J.F., Kirchman D.L. Activity of abundant and rare bacteria in a coastal ocean. Proc. Natl. Acad. Sci. USA 2011, 108(31):12776-12781.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, Issue.31
, pp. 12776-12781
-
-
Campbell, B.J.1
Yu, L.Y.2
Heidelberg, J.F.3
Kirchman, D.L.4
-
4
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso J.G., Kuczynski J., Stombaugh J., Bittinger K., Bushman F.D., Costello E.K., Fierer N., Pena A.G., Goodrich J.K., Gordon J.I., Huttley G.A., Kelley S.T., Knights D., Koenig J.E., Ley R.E., Lozupone C.A., McDonald D., Muegge B.D., Pirrung M., Reeder J., Sevinsky J.R., Tumbaugh P.J., Walters W.A., Widmann J., Yatsunenko T., Zaneveld J., Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 2010, 7(5):335-336.
-
(2010)
Nat. Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Tumbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
5
-
-
84925436965
-
Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome
-
De Vrieze J., Saunders A.M., He Y., Fang J., Nielsen P.H., Verstraete W., Boon N. Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome. Water Res. 2015, 75:312-323.
-
(2015)
Water Res.
, vol.75
, pp. 312-323
-
-
De Vrieze, J.1
Saunders, A.M.2
He, Y.3
Fang, J.4
Nielsen, P.H.5
Verstraete, W.6
Boon, N.7
-
6
-
-
84861557467
-
Molecular ecological network analyses
-
Deng Y., Jiang Y.-H., Yang Y., He Z., Luo F., Zhou J. Molecular ecological network analyses. BMC Bioinf. 2012, 13.
-
(2012)
BMC Bioinf.
, vol.13
-
-
Deng, Y.1
Jiang, Y.-H.2
Yang, Y.3
He, Z.4
Luo, F.5
Zhou, J.6
-
7
-
-
84945465545
-
Exploring Actinobacteria assemblages in coastal marine sediments under contrasted human influences in the West Istria Sea, Croatia
-
Duran R., Bielen A., Paradzik T., Gassie C., Pustijanac E., Cagnon C., Hamer B., Vujaklija D. Exploring Actinobacteria assemblages in coastal marine sediments under contrasted human influences in the West Istria Sea, Croatia. Environ. Sci. Pollut. Res. 2015, 22(20):15215-15229.
-
(2015)
Environ. Sci. Pollut. Res.
, vol.22
, Issue.20
, pp. 15215-15229
-
-
Duran, R.1
Bielen, A.2
Paradzik, T.3
Gassie, C.4
Pustijanac, E.5
Cagnon, C.6
Hamer, B.7
Vujaklija, D.8
-
8
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar R.C., Haas B.J., Clemente J.C., Quince C., Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011, 27(16):2194-2200.
-
(2011)
Bioinformatics
, vol.27
, Issue.16
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
9
-
-
0000652155
-
Nitrogen mineralization, immobilization, and nitrification
-
Hart S.C., Stark J.M., Davidson E.A., Firestone M.K. Nitrogen mineralization, immobilization, and nitrification. Methods of Soil Analysis: Part 2-Microbiological and Biochemical Properties 1994, 985-1018.
-
(1994)
Methods of Soil Analysis: Part 2-Microbiological and Biochemical Properties
, pp. 985-1018
-
-
Hart, S.C.1
Stark, J.M.2
Davidson, E.A.3
Firestone, M.K.4
-
10
-
-
84900014541
-
Bacteroides luti sp. nov., an anaerobic, cellulolytic and xylanolytic bacterium isolated from methanogenic sludge
-
Hatamoto M., Kaneshige M., Nakamura A., Yamaguchi T. Bacteroides luti sp. nov., an anaerobic, cellulolytic and xylanolytic bacterium isolated from methanogenic sludge. Int. J. Syst. Evol. Microbiol. 2014, 64:1770-1774.
-
(2014)
Int. J. Syst. Evol. Microbiol.
, vol.64
, pp. 1770-1774
-
-
Hatamoto, M.1
Kaneshige, M.2
Nakamura, A.3
Yamaguchi, T.4
-
11
-
-
84876045220
-
Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters
-
Hugoni M., Taib N., Debroas D., Domaizon I., Dufournel I.J., Bronner G., Salter I., Agogue H., Mary I., Galand P.E. Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. Proc. Natl. Acad. Sci. USA 2013, 110(15):6004-6009.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, Issue.15
, pp. 6004-6009
-
-
Hugoni, M.1
Taib, N.2
Debroas, D.3
Domaizon, I.4
Dufournel, I.J.5
Bronner, G.6
Salter, I.7
Agogue, H.8
Mary, I.9
Galand, P.E.10
-
12
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille M.G., Zaneveld J., Caporaso J.G., McDonald D., Knights D., Reyes J.A., Clemente J.C., Burkepile D.E., Vega Thurber R.L., Knight R., Beiko R.G., Huttenhower C. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 2013, 31(9):814-821.
-
(2013)
Nat. Biotechnol.
, vol.31
, Issue.9
, pp. 814-821
-
-
Langille, M.G.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
Clemente, J.C.7
Burkepile, D.E.8
Vega Thurber, R.L.9
Knight, R.10
Beiko, R.G.11
Huttenhower, C.12
-
13
-
-
84900825977
-
Straw- and slurry-associated prokaryotic communities differ during co-fermentation of straw and swine manure
-
Li J.B., Rui J.P., Pei Z.J., Sun X.R., Zhang S.H., Yan Z.Y., Wang Y.P., Liu X.F., Zheng T., Li X.Z. Straw- and slurry-associated prokaryotic communities differ during co-fermentation of straw and swine manure. Appl. Microbiol. Biotechnol. 2014, 98(10):4771-4780.
-
(2014)
Appl. Microbiol. Biotechnol.
, vol.98
, Issue.10
, pp. 4771-4780
-
-
Li, J.B.1
Rui, J.P.2
Pei, Z.J.3
Sun, X.R.4
Zhang, S.H.5
Yan, Z.Y.6
Wang, Y.P.7
Liu, X.F.8
Zheng, T.9
Li, X.Z.10
-
14
-
-
84887171476
-
Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar
-
Li X., Rui J., Mao Y., Yannarell A., Mackie R. Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar. Soil Biol. Biochem. 2014, 68:392-401.
-
(2014)
Soil Biol. Biochem.
, vol.68
, pp. 392-401
-
-
Li, X.1
Rui, J.2
Mao, Y.3
Yannarell, A.4
Mackie, R.5
-
15
-
-
84923370418
-
Review on research achievements of biogas from anaerobic digestion
-
Mao C.L., Feng Y.Z., Wang X.J., Ren G.X. Review on research achievements of biogas from anaerobic digestion. Renewable Sustainable Energy Rev. 2015, 45:540-555.
-
(2015)
Renewable Sustainable Energy Rev.
, vol.45
, pp. 540-555
-
-
Mao, C.L.1
Feng, Y.Z.2
Wang, X.J.3
Ren, G.X.4
-
16
-
-
84881323927
-
A comparative analysis of industrial Escherichia coli K-12 and B strains in high-glucose batch cultivations on process-, transcriptome- and proteome level
-
Marisch K., Bayer K., Scharl T., Mairhofer J., Krempl P.M., Hummel K., Razzazi-Fazeli E., Striedner G. A comparative analysis of industrial Escherichia coli K-12 and B strains in high-glucose batch cultivations on process-, transcriptome- and proteome level. PLoS One 2013, 8(8):16.
-
(2013)
PLoS One
, vol.8
, Issue.8
, pp. 16
-
-
Marisch, K.1
Bayer, K.2
Scharl, T.3
Mairhofer, J.4
Krempl, P.M.5
Hummel, K.6
Razzazi-Fazeli, E.7
Striedner, G.8
-
17
-
-
80054739843
-
Effect of oxygen and temperature on the dynamic of the dominant bacterial populations of pig manure and on the persistence of pig-associated genetic markers, assessed in river water microcosms
-
Marti R., Mieszkin S., Solecki O., Pourcher A.M., Hervio-Heath D., Gourmelon M. Effect of oxygen and temperature on the dynamic of the dominant bacterial populations of pig manure and on the persistence of pig-associated genetic markers, assessed in river water microcosms. J. Appl. Microbiol. 2011, 111(5):1159-1175.
-
(2011)
J. Appl. Microbiol.
, vol.111
, Issue.5
, pp. 1159-1175
-
-
Marti, R.1
Mieszkin, S.2
Solecki, O.3
Pourcher, A.M.4
Hervio-Heath, D.5
Gourmelon, M.6
-
18
-
-
84925387126
-
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
-
Maus I., Cibis K.G., Wibberg D., Winkler A., Stolze Y., Konig H., Puhler A., Schluter A. Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant. J. Biotechnol. 2015, 203:17-18.
-
(2015)
J. Biotechnol.
, vol.203
, pp. 17-18
-
-
Maus, I.1
Cibis, K.G.2
Wibberg, D.3
Winkler, A.4
Stolze, Y.5
Konig, H.6
Puhler, A.7
Schluter, A.8
-
19
-
-
0036353494
-
Small world patterns in food webs
-
Montoya J.M., Sole R.V. Small world patterns in food webs. J. Theor. Biol. 2002, 214(3):405-412.
-
(2002)
J. Theor. Biol.
, vol.214
, Issue.3
, pp. 405-412
-
-
Montoya, J.M.1
Sole, R.V.2
-
20
-
-
84928353254
-
Soil microbiome responses to the short-term effects of Amazonian deforestation
-
Navarrete A.A., Tsai S.M., Mendes L.W., Faust K., de Hollander M., Cassman N.A., Raes J., van Veen J.A., Kuramae E.E. Soil microbiome responses to the short-term effects of Amazonian deforestation. Mol. Ecol. 2015, 24(10):2433-2448.
-
(2015)
Mol. Ecol.
, vol.24
, Issue.10
, pp. 2433-2448
-
-
Navarrete, A.A.1
Tsai, S.M.2
Mendes, L.W.3
Faust, K.4
de Hollander, M.5
Cassman, N.A.6
Raes, J.7
van Veen, J.A.8
Kuramae, E.E.9
-
21
-
-
84918832993
-
Temperature-dependent transformation of biogas-producing microbial communities points to the increased importance of hydrogenotrophic methanogenesis under thermophilic operation
-
Pap B., Gyoerkei A., Boboescu I.Z., Nagy I.K., Biro T., Kondorosi E., Maroti G. Temperature-dependent transformation of biogas-producing microbial communities points to the increased importance of hydrogenotrophic methanogenesis under thermophilic operation. Bioresour. Technol. 2015, 177:375-380.
-
(2015)
Bioresour. Technol.
, vol.177
, pp. 375-380
-
-
Pap, B.1
Gyoerkei, A.2
Boboescu, I.Z.3
Nagy, I.K.4
Biro, T.5
Kondorosi, E.6
Maroti, G.7
-
22
-
-
84942238615
-
The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters
-
Rui J., Li J., Zhang S., Yan X., Wang Y., Li X. The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters. Biotechnol. Biofuels 2015, 8:158.
-
(2015)
Biotechnol. Biofuels
, vol.8
, pp. 158
-
-
Rui, J.1
Li, J.2
Zhang, S.3
Yan, X.4
Wang, Y.5
Li, X.6
-
23
-
-
84921601603
-
Seasonal dynamics of active SAR11 ecotypes in the oligotrophic Northwest Mediterranean Sea
-
Salter I., Galand P.E., Fagervold S.K., Lebaron P., Obernosterer I., Oliver M.J., Suzuki M.T., Tricoire C. Seasonal dynamics of active SAR11 ecotypes in the oligotrophic Northwest Mediterranean Sea. ISME J. 2015, 9(2):347-360.
-
(2015)
ISME J.
, vol.9
, Issue.2
, pp. 347-360
-
-
Salter, I.1
Galand, P.E.2
Fagervold, S.K.3
Lebaron, P.4
Obernosterer, I.5
Oliver, M.J.6
Suzuki, M.T.7
Tricoire, C.8
-
24
-
-
84911407780
-
Rapid establishment of thermophilic anaerobic microbial community during the one-step startup of thermophilic anaerobic digestion from a mesophilic digester
-
Tian Z., Zhang Y., Li Y.Y., Chi Y.Z., Yang M. Rapid establishment of thermophilic anaerobic microbial community during the one-step startup of thermophilic anaerobic digestion from a mesophilic digester. Water Res. 2015, 69:9-19.
-
(2015)
Water Res.
, vol.69
, pp. 9-19
-
-
Tian, Z.1
Zhang, Y.2
Li, Y.Y.3
Chi, Y.Z.4
Yang, M.5
-
25
-
-
0031080423
-
Peptidases of the rumen bacterium Prevotella ruminicola
-
Wallace R.J., McKain N., Broderick G.A., Rode L.M., Walker N.D., Newbold C.J., Kopecny J. Peptidases of the rumen bacterium Prevotella ruminicola. Anaerobe 1997, 3(1):35-42.
-
(1997)
Anaerobe
, vol.3
, Issue.1
, pp. 35-42
-
-
Wallace, R.J.1
McKain, N.2
Broderick, G.A.3
Rode, L.M.4
Walker, N.D.5
Newbold, C.J.6
Kopecny, J.7
-
26
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73(16):5261-5267.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, Issue.16
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
27
-
-
76649102408
-
Biogas production: current state and perspectives
-
Weiland P. Biogas production: current state and perspectives. Appl. Microbiol. Biotechnol. 2010, 85(4):849-860.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.85
, Issue.4
, pp. 849-860
-
-
Weiland, P.1
-
28
-
-
79551681146
-
Investigation of microorganisms colonising activated zeolites during anaerobic biogas production from grass silage
-
Weiss S., Zankel A., Lebuhn M., Petrak S., Somitsch W., Guebitz G.M. Investigation of microorganisms colonising activated zeolites during anaerobic biogas production from grass silage. Bioresour. Technol. 2011, 102(6):4353-4359.
-
(2011)
Bioresour. Technol.
, vol.102
, Issue.6
, pp. 4353-4359
-
-
Weiss, S.1
Zankel, A.2
Lebuhn, M.3
Petrak, S.4
Somitsch, W.5
Guebitz, G.M.6
-
29
-
-
40249117148
-
The effect of temperature on the performance and stability of thermophilic anaerobic digestion
-
Wilson C.A., Murthy S.M., Fang Y., Novak J.T. The effect of temperature on the performance and stability of thermophilic anaerobic digestion. Water Sci. Technol. 2008, 57(2):297-304.
-
(2008)
Water Sci. Technol.
, vol.57
, Issue.2
, pp. 297-304
-
-
Wilson, C.A.1
Murthy, S.M.2
Fang, Y.3
Novak, J.T.4
-
30
-
-
84939621705
-
Comparing activated carbon of different particle sizes on enhancing methane generation in upflow anaerobic digester
-
Xu S., He C., Luo L., Lu F., He P., Cui L. Comparing activated carbon of different particle sizes on enhancing methane generation in upflow anaerobic digester. Bioresour. Technol. 2015, 196:606-612.
-
(2015)
Bioresour. Technol.
, vol.196
, pp. 606-612
-
-
Xu, S.1
He, C.2
Luo, L.3
Lu, F.4
He, P.5
Cui, L.6
-
31
-
-
12544258487
-
Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli
-
Yamamoto K., Hirao K., Oshima T., Aiba H., Utsumi R., Ishihama A. Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli. J. Biol. Chem. 2005, 280(2):1448-1456.
-
(2005)
J. Biol. Chem.
, vol.280
, Issue.2
, pp. 1448-1456
-
-
Yamamoto, K.1
Hirao, K.2
Oshima, T.3
Aiba, H.4
Utsumi, R.5
Ishihama, A.6
-
32
-
-
84900813828
-
Biogas production and methanogenic archaeal community in mesophilic and thermophilic anaerobic co-digestion processes
-
Yu D., Kurola J.M., Lahde K., Kymalainen M., Sinkkonen A., Romantschuk M. Biogas production and methanogenic archaeal community in mesophilic and thermophilic anaerobic co-digestion processes. J. Environ. Manage. 2014, 143:54-60.
-
(2014)
J. Environ. Manage.
, vol.143
, pp. 54-60
-
-
Yu, D.1
Kurola, J.M.2
Lahde, K.3
Kymalainen, M.4
Sinkkonen, A.5
Romantschuk, M.6
-
33
-
-
84899452861
-
Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota
-
Zhang Z.G., Geng J.W., Tang X.D., Fan H., Xu J.C., Wen X.J., Ma Z.S., Shi P. Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota. ISME J. 2014, 8(4):881-893.
-
(2014)
ISME J.
, vol.8
, Issue.4
, pp. 881-893
-
-
Zhang, Z.G.1
Geng, J.W.2
Tang, X.D.3
Fan, H.4
Xu, J.C.5
Wen, X.J.6
Ma, Z.S.7
Shi, P.8
-
34
-
-
84973472739
-
Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool
-
Zhang W., Wang Y., Bougouffa S., Tian R., Cao H., Li Y., Cai L., Wong Y.H., Zhang G., Zhou G., Zhang X., Bajic V.B., Al-Suwailem A., Qian P.-Y. Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool. Environ. Microbiol. 2015, 17(10):4089-4104.
-
(2015)
Environ. Microbiol.
, vol.17
, Issue.10
, pp. 4089-4104
-
-
Zhang, W.1
Wang, Y.2
Bougouffa, S.3
Tian, R.4
Cao, H.5
Li, Y.6
Cai, L.7
Wong, Y.H.8
Zhang, G.9
Zhou, G.10
Zhang, X.11
Bajic, V.B.12
Al-Suwailem, A.13
Qian, P.-Y.14
|