-
1
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
A. Bairoch and R. Apweiler. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucl. Acids Res., 28:45-48, 2000.
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
2
-
-
0033976454
-
GenBank
-
D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and B. A. Rapp. GenBank. Nucl. Acids. Res., 28(1):15-18, 2000.
-
(2000)
Nucl. Acids. Res.
, vol.28
, Issue.1
, pp. 15-18
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Rapp, B.A.5
-
4
-
-
0031811850
-
MHCPEP, a database of MHC-binding peptides
-
V. Brusic, G. Rudy, and L. C. Harrison. MHCPEP, a database of MHC-binding peptides. Nucl. Acids. Res., 26(1):368-371, 1998.
-
(1998)
Nucl. Acids. Res.
, vol.26
, Issue.1
, pp. 368-371
-
-
Brusic, V.1
Rudy, G.2
Harrison, L.C.3
-
5
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
C. Burge and S. Karlin. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268:78-94, 1997.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
6
-
-
27144489164
-
A tutorial on support vector machines for pattern recognition
-
C. J. C. Burges. A tutorial on support vector machines for pattern recognition. Data Mining and Knowledge Discovery, 2:121-167, 1998.
-
(1998)
Data Mining and Knowledge Discovery
, vol.2
, pp. 121-167
-
-
Burges, C.J.C.1
-
7
-
-
0036196269
-
Challenges in the development of effective vaccines for cancer
-
C. Buteau, S. Markovic, and E. Celis. Challenges in the development of effective vaccines for cancer. Mayo Clin Proc, 77:339-349, 2002.
-
(2002)
Mayo Clin Proc
, vol.77
, pp. 339-349
-
-
Buteau, C.1
Markovic, S.2
Celis, E.3
-
8
-
-
0142174642
-
Prediction of MHC class I binding peptides, using SVMHC
-
P. Dönnes and A. Elofsson. Prediction of MHC class I binding peptides, using SVMHC. BMC Bioinformatics, 3:25, 2002.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 25
-
-
Dönnes, P.1
Elofsson, A.2
-
9
-
-
0034141782
-
Prediction of transcription regulatory sites in Archaea by a comparative genomic approach
-
M. S. Gelfand, E. V. Koonin, and A. A. Mironov. Prediction of transcription regulatory sites in Archaea by a comparative genomic approach. Nucl. Acids Res., 28:695-705, 2001.
-
(2001)
Nucl. Acids Res.
, vol.28
, pp. 695-705
-
-
Gelfand, M.S.1
Koonin, E.V.2
Mironov, A.A.3
-
10
-
-
0034087707
-
Human memory ctl response specific for influenza a virus is broad and multi-specific
-
C. Gianfrani, C. Oseroff, J. Sidney, R.W. Chesnut, and A. Sette. Human memory ctl response specific for influenza a virus is broad and multi-specific. Human Immun., 61:438-452, 2000.
-
(2000)
Human Immun.
, vol.61
, pp. 438-452
-
-
Gianfrani, C.1
Oseroff, C.2
Sidney, J.3
Chesnut, R.W.4
Sette, A.5
-
12
-
-
0035859982
-
From genome to vaccine: In silico predictions, ex vivo verification
-
A. S. De Groot, A. Bosma, N. Chinai, J. Frost, B. M. Jesdale, M. A. Gonzalez, W. Martin, and C. Saint-Aubin. From genome to vaccine: in silico predictions, ex vivo verification. Vaccine, 19:4385-4395, 2001a.
-
(2001)
Vaccine
, vol.19
, pp. 4385-4395
-
-
De Groot, A.S.1
Bosma, A.2
Chinai, N.3
Frost, J.4
Jesdale, B.M.5
Gonzalez, M.A.6
Martin, W.7
Saint-Aubin, C.8
-
13
-
-
0034845973
-
Rapid determination of HLA B∗07 ligands from the West Nile virus NY99 genome
-
A. S. De Groot, C. Saint-Aubin, A. Bosma, J. Rayner, and W. Martin. Rapid determination of HLA B∗07 ligands from the West Nile virus NY99 genome. Emerging Infections Diseases, 7(4):706-713, 2001b.
-
(2001)
Emerging Infections Diseases
, vol.7
, Issue.4
, pp. 706-713
-
-
De Groot, A.S.1
Saint-Aubin, C.2
Bosma, A.3
Rayner, J.4
Martin, W.5
-
14
-
-
0031576987
-
Two complementary methods for predicting peptides binding major histocompatibility complex molecules
-
K. Gulukota, J. Sidney, A. Sette, and C. DeLisi. Two complementary methods for predicting peptides binding major histocompatibility complex molecules. J. Mol. Biol., 267:1258-1267, 1997.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1258-1267
-
-
Gulukota, K.1
Sidney, J.2
Sette, A.3
DeLisi, C.4
-
15
-
-
0026507564
-
Three-dimensional structure of a peptide extending from one end of a class I MHC binding site
-
D. F. Hunt, R. A. Henderson, J. Shabanowitz, K. Sakaguchi, H. Michel, N. Sevilir, et al. Three-dimensional structure of a peptide extending from one end of a class I MHC binding site. Science, 255:1261-63, 1992.
-
(1992)
Science
, vol.255
, pp. 1261-1263
-
-
Hunt, D.F.1
Henderson, R.A.2
Shabanowitz, J.3
Sakaguchi, K.4
Michel, H.5
Sevilir, N.6
-
17
-
-
0034579007
-
Identifying cytotoxic t cell epitopes from genomic and proteomic information: The human MHC project
-
S.L. Lauemoller, C. Kesmir, S.L. Corbet, A. Formsgaard, A. Holm, M.H. Claesson, S. Brunak, and S. Buus. Identifying cytotoxic t cell epitopes from genomic and proteomic information: "The human MHC project". Rev Immunogenet, 2:477-91, 2000.
-
(2000)
Rev Immunogenet
, vol.2
, pp. 477-491
-
-
Lauemoller, S.L.1
Kesmir, C.2
Corbet, S.L.3
Formsgaard, A.4
Holm, A.5
Claesson, M.H.6
Brunak, S.7
Buus, S.8
-
18
-
-
0032387825
-
Predicting peptides that bind to MHC molecules using supervised learning of hidden markov models
-
H. Mamitsuka. Predicting peptides that bind to MHC molecules using supervised learning of hidden markov models. Proteins: Struct. Func. Gen., 33(4):460-74, 1998.
-
(1998)
Proteins: Struct. Func. Gen.
, vol.33
, Issue.4
, pp. 460-474
-
-
Mamitsuka, H.1
-
20
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
-
K. C. Parker, M. A. Bednarek, and J. E. Coligan. Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J. Immunol., 152(10):163-175, 1994a.
-
(1994)
J. Immunol.
, vol.152
, Issue.10
, pp. 163-175
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
21
-
-
0033388725
-
SYFPEITHI: Database for MHC ligands and peptide motifs
-
H. Rammensee, J. Bachmann, N.P. Emmerich, O.A. Bachor, and S. Stevanovic. SYFPEITHI: database for MHC ligands and peptide motifs. Immunogen., 50(3-4):213-9, 1999.
-
(1999)
Immunogen.
, vol.50
, Issue.3-4
, pp. 213-219
-
-
Rammensee, H.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
22
-
-
0035095532
-
A listing of human tumor antigens recognized by T cells
-
N. Renkvist, C. Castelli, P. F. Robbins, and G. Parmiani. A listing of human tumor antigens recognized by T cells. Cancer Immunol. Immunother., 50:3-15, 2001.
-
(2001)
Cancer Immunol. Immunother.
, vol.50
, pp. 3-15
-
-
Renkvist, N.1
Castelli, C.2
Robbins, P.F.3
Parmiani, G.4
-
23
-
-
0033523959
-
Predicting binding affinities of protein ligands from three-dimensional models: Application to peptide binding to class I major histocompatibility proteins
-
D. Rognan, S. L. Lauemoller, A. Holm, S. Buus, and V. Tschinke. Predicting binding affinities of protein ligands from three-dimensional models: application to peptide binding to class I major histocompatibility proteins. J. Med. Chem., 42:4650-4658, 1999.
-
(1999)
J. Med. Chem.
, vol.42
, pp. 4650-4658
-
-
Rognan, D.1
Lauemoller, S.L.2
Holm, A.3
Buus, S.4
Tschinke, V.5
-
24
-
-
0033103021
-
A new era for cancer immunotherapy based on the genes that encode cancer antigens
-
S. A. Rosenberg. A new era for cancer immunotherapy based on the genes that encode cancer antigens. Immunity, 10:281-287, 1999.
-
(1999)
Immunity
, vol.10
, pp. 281-287
-
-
Rosenberg, S.A.1
-
25
-
-
0027304399
-
Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules
-
J. Ruppert, J. Sidney, E. Celis, R.T. Kubo, H.M. Grey, and A. Sette. Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules. Cell, 74:929-937, 1993.
-
(1993)
Cell
, vol.74
, pp. 929-937
-
-
Ruppert, J.1
Sidney, J.2
Celis, E.3
Kubo, R.T.4
Grey, H.M.5
Sette, A.6
-
26
-
-
0032210911
-
Prediction of well-conserved HIV-1 ligands using a matrix-based algorithm, EpiMatrix
-
J. A. Schafer, B. M. Jesdale, J. A. George, N. M. Koutatab, and A.S. De Groot. Prediction of well-conserved HIV-1 ligands using a matrix-based algorithm, EpiMatrix. Vaccine, 16(19):1880-4, 1998.
-
(1998)
Vaccine
, vol.16
, Issue.19
, pp. 1880-1884
-
-
Schafer, J.A.1
Jesdale, B.M.2
George, J.A.3
Koutatab, N.M.4
De Groot, A.S.5
-
27
-
-
0023042012
-
Information content of binding sites on nucleotide sequences
-
T. D. Schneider, G. D. Stormo, L. Gold, and A. Ehrenfraucht. Information content of binding sites on nucleotide sequences. J. Mol. Biol., 188:415-431, 1986.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 415-431
-
-
Schneider, T.D.1
Stormo, G.D.2
Gold, L.3
Ehrenfraucht, A.4
-
29
-
-
0034072450
-
DNA binding sites: Representation and discovery
-
G. D. Stormo. DNA binding sites: representation and discovery. Bioinformatics, 16:16-23, 2000.
-
(2000)
Bioinformatics
, vol.16
, pp. 16-23
-
-
Stormo, G.D.1
-
30
-
-
0000133199
-
Identifying protein-binding sites from unaligned DNA fragments
-
G. D. Stormo and G. W. Hartzell. Identifying protein-binding sites from unaligned DNA fragments. Proc. Natl. Acad. Sci. USA, 86:1183-1187, 1989.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1183-1187
-
-
Stormo, G.D.1
Hartzell, G.W.2
-
31
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalities, and weight-matrix choice
-
J. D. Thompson, D. G. Higgins, and T. Gibson. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalities, and weight-matrix choice. Nucl. Acids Res., 22:4673-4680, 1994.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.3
-
32
-
-
0035895505
-
The sequence of the human genome
-
J.C. Venter, M.D. Adams, E.W. Myers, P.W. Li, R.J. Mural, G.G. Sutton, et al. The sequence of the human genome. Science, 291:1304-1351, 2001.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
-
33
-
-
18444400543
-
The Protein Information Resource: An integrated public resource of functional annotation of proteins
-
C. H. Wu, H. Huang, L. Arminski, J. Castro-Alvear, Y. Chen, Z.-Z. Hu, et al. The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucl. Acids Res., 30(1):35-37, 2002.
-
(2002)
Nucl. Acids Res.
, vol.30
, Issue.1
, pp. 35-37
-
-
Wu, C.H.1
Huang, H.2
Arminski, L.3
Castro-Alvear, J.4
Chen, Y.5
Hu, Z.-Z.6
|