Evidence of widespread natural recombination among field isolates of equine herpesvirus 4 but not among field isolates of equine herpesvirus 1

Journal of General Virology

Volumn 97, Issue 3, 2016, Pages 747-755

  Vaz, P K ^a   Horsington, J ^a   Hartley, C A ^a   Browning, G F ^a   Ficorilli, N P ^b   Studdert, M J ^a   Gilkerson, J R ^b   Devlin, J M ^b  

^a THE UNIVERSITY OF MELBOURNE   (Australia)

^b The University of Melbourne   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; NUCLEOTIDE;

ARTICLE; EQUID HERPESVIRUS 1; EQUID HERPESVIRUS 4; GENE SEQUENCE; GENETIC RECOMBINATION; HIGH THROUGHPUT SEQUENCING; NONHUMAN; PRIORITY JOURNAL; VIRAL GENETICS; VIRUS GENOME; VIRUS PATHOGENESIS; ANIMAL; CLASSIFICATION; GENETICS; HERPES VIRUS INFECTION; HORSE; HORSE DISEASE; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NEW ZEALAND; NUCLEOTIDE SEQUENCE; PHYLOGENY; VETERINARY; VIROLOGY;

ANIMALS; BASE SEQUENCE; GENOME, VIRAL; HERPESVIRIDAE INFECTIONS; HERPESVIRUS 1, EQUID; HERPESVIRUS 4, EQUID; HORSE DISEASES; HORSES; MOLECULAR SEQUENCE DATA; NEW ZEALAND; PHYLOGENY; RECOMBINATION, GENETIC;

EID: 84960345140     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/jgv.0.000378     Document Type: Article

References (39)

1. Allen, G., Kydd, J. and Slater, J. (2004). Equid herpesvirus 1 and equid herpesvirus 4 infections. In Infectious Diseases of Livestock, pp. 829-859. Edited by J. Coetzer and R. Tustin. Newmarket: Oxford University Press.
2. Bagust, T. J. and Pascoe, R. R. (1968). Isolation of equine rhinopnemonitis virus from acute respiratory disease in a horse in queensland. Vet J 44, 296.
3. Bagust, T. J. and Pascoe, R. R. (1970). Studies on equine herpesviruses. 1. Characterisation of a strain of equine rhinopneumonitis virus isolated in Queensland. Aust Vet J 46, 421-427.
4. Bruen, T. C., Philippe, H. and Bryant, D. (2006). A simple and robust statistical test for detecting the presence of recombination. Genetics 172, 2665-2681.
5. Crabb, B. S. and Studdert, M. J. (1990). Comparative studies of the proteins of equine herpesviruses 4 and 1 and asinine herpesvirus 3: antibody response of the natural hosts. J Gen Virol 71, 2033-2041.
6. Crabb, B. S. and Studdert, M. J. (1995). Equine herpesviruses 4 (equine rhinopneumonitis virus) and 1 (equine abortion virus). Adv Virus Res 45, 153-190.
7. Edington, N., Smyth, B. and Griffiths, L. (1991). The role of endothelial cell infection in the endometrium, placenta and foetus of equid herpesvirus 1 (EHV-1) abortions. J Comp Pathol 104, 379-387.
8. Gilkerson, J. R., Whalley, J. M., Drummer, H. E., Studdert, M. J. and Love, D. N. (1999). Epidemiological studies of equine herpesvirus 1 (EHV-1) in Thoroughbred foals: a review of studies conducted in the Hunter Valley of New South Wales between 1995 and 1997. Vet Microbiol 68, 15-25.
9. Gleeson, L. J., Sullivan, N. D. and Studdert, M. J. (1976). Equine herpesviruses: type 3 as an abortigenic agent. Aust Vet J 52, 349-354.
10. Horner, G. W. (1981). Serological relationship between abortifacient and respiratory strains of equine herpesvirus type 1 in New Zealand. N Z Vet J 29, 7-8.
11. Huang Ja, J. A., Ficorilli, N., Hartley, C. A., Allen, G. P. and Studdert, M. J. (2002). Polymorphism of open reading frame 71 of equine herpesvirus-4 (EHV-4) and EHV-1. J Gen Virol 83, 525-531.
12. Huson, D. H. (1998). SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14, 68-73.
13. Katoh, K. and Standley, D. M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30, 772-780.
14. Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S. and other authors (2012). Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647-1649.
15. Kolb, A. W., Ané, C. and Brandt, C. R. (2013). Using HSV-1 genome phylogenetics to track past human migrations. PLoS One 8, e76267.
16. Lee, S. W., Markham, P. F., Markham, J. F., Petermann, I., Noormohammadi, A. H., Browning, G. F., Ficorilli, N. P., Hartley, C. A. and Devlin, J. M. (2011). First complete genome sequence of infectious laryngotracheitis virus. BMC Genomics 12, 197.
17. Lee, S. W., Markham, P. F., Coppo, M. J., Legione, A. R., Markham, J. F., Noormohammadi, A. H., Browning, G. F., Ficorilli, N., Hartley, C. A. and Devlin, J. M. (2012). Attenuated vaccines can recombine to form virulent field viruses. Science 337, 188.
18. Lee, S. W., Devlin, J. M., Markham, J. F., Noormohammadi, A. H., Browning, G. F., Ficorilli, N. P., Hartley, C. A. and Markham, P. F. (2013). Phylogenetic and molecular epidemiological studies reveal evidence of multiple past recombination events between infectious laryngotracheitis viruses. PLoS One 8, e55121.
19. Martin, D., Murrell, B., Golden, M., Khoosal, A. and Muhire, B. (2015). RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evolution 1, vev003.
20. Norberg, P., Liljeqvist, J. A., Bergström, T., Sammons, S., Schmid, D. S. and Loparev, V. N. (2006). Complete-genome phylogenetic approach to varicella-zoster virus evolution: genetic divergence and evidence for recombination. J Virol 80, 9569-9576.
21. Norberg, P., Depledge, D. P., Kundu, S., Atkinson, C., Brown, J., Haque, T., Hussaini, Y., MacMahon, E., Molyneaux, P. and other authors (2015). Recombination of globally circulating varicellazoster virus. J Virol 89, 7133-7146.
22. Patel, J. R. and Heldens, J. (2005). Equine herpesviruses 1 (EHV-1) and 4 (EHV-4) - epidemiology, disease and immunoprophylaxis: a brief review. Vet J 170, 14-23.
23. Peet, R. L., Coackley, W., Smith, V. W. and Main, C. (1978). Equine abortion associated with herpesvirus. Aust Vet J 54, 151.
24. Peters, G. A., Tyler, S. D., Grose, C., Severini, A., Gray, M. J., Upton, C. and Tipples, G. A. (2006). A full-genome phylogenetic analysis of varicella-zoster virus reveals a novel origin of replication-based genotyping scheme and evidence of recombination between major circulating clades. J Virol 80, 9850-9860.
25. Pignatti, P. F., Cassai, E., Meneguzzi, G., Chenciner, N. and Milanesi, G. (1979). Herpes simplex virus DNA isolation from infected cells with a novel procedure. Virology 93, 260-264.
26. Posada, D. (2002). Evaluation of methods for detecting recombination from DNA sequences: empirical data. Mol Biol Evol 19, 708-717.
27. Posada, D. and Crandall, K. A. (2001). Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci U S A 98, 13757-13762.
28. Studdert, M. J. (1971). Equine herpesviruses. 4. Concurrent infection in horses with strangles and conjunctivitis. Aust Vet J 47, 434-436.
29. Studdert, M. J. and Blackney, M. H. (1979). Equine herpesviruses: on the differentiation of respiratory from foetal strains of type 1. Aust Vet J 55, 488-492.
30. Studdert, M. J. and Gleeson, L. J. (1977). Isolation of equine rhinovirus type 1. Aust Vet J 53, 452.
31. Studdert, M. J., Turner, A. J. and Peterson, J. E. (1970). Equine herpesviruses. I. Isolation and characterisation of equine rhinopneumonitis virus and other equine herpesviruses from horses. Aust Vet J 46, 83-89.
32. Studdert, M. J., Fitzpatrick, D. R., Horner, G. W., Westbury, H. A. and Gleeson, L. J. (1984). Molecular epidemiology and pathogenesis of some equine herpesvirus type 1 (equine abortion virus) and type 4 (equine rhinopneumonitis virus) isolates. Aust Vet J 61, 345-348.
33. Studdert, M. J., Hartley, C. A., Dynon, K., Sandy, J. R., Slocombe, R. F., Charles, J. A., Milne, M. E., Clarke, A. F. and El-Hage, C. (2003). Outbreak of equine herpesvirus type 1 myeloencephalitis: new insights from virus identification by PCR and the application of an EHV-1-specific antibody detection ELISA. Vet Rec 153, 417-423.
34. Telford, E. A., Watson, M. S., McBride, K. and Davison, A. J. (1992). The DNA sequence of equine herpesvirus-1. Virology 189, 304-316.
35. Telford, E. A., Watson, M. S., Perry, J., Cullinane, A. A. and Davison, A. J. (1998). The DNA sequence of equine herpesvirus-4. J Gen Virol 79, 1197-1203.
36. Thiry, E., Meurens, F., Muylkens, B., McVoy, M., Gogev, S., Thiry, J., Vanderplasschen, A., Epstein, A., Keil, G. and Schynts, F. (2005). Recombination in alphaherpesviruses. Rev Med Virol 15, 89-103.
37. Varrasso, A., Dynon, K., Ficorilli, N., Hartley, C. A., Studdert, M. J. and Drummer, H. E. (2001). Identification of equine herpesviruses 1 and 4 by polymerase chain reaction. Aust Vet J 79, 563-569.
38. Weller, S. K. and Sawitzke, J. A. (2014). Recombination promoted by DNA viruses: phage l to herpes simplex virus. Annu Rev Microbiol 68, 237-258.
39. Zell, R., Taudien, S., Pfaff, F., Wutzler, P., Platzer, M. and Sauerbrei, A. (2012). Sequencing of 21 varicella-zoster virus genomes reveals two novel genotypes and evidence of recombination. J Virol 86, 1608-1622.