-
2
-
-
33751111173
-
Text mining and its potential applications in systems biology
-
December
-
Sophia Ananiadou, Douglas B. Kell, and Jun. I. Tsujii. 2006. Text mining and its potential applications in systems biology. Trends Biotechnol, 24(12):571-579, December.
-
(2006)
Trends Biotechnol
, vol.24
, Issue.12
, pp. 571-579
-
-
Ananiadou, S.1
Kell, D.B.2
Jun. Tsujii, I.3
-
3
-
-
77953917404
-
Event extraction for systems biology by text mining the literature
-
July
-
Sophia Ananiadou, Sampo Pyysalo, Jun'ichi Tsujii, and Douglas B. Kell. 2010. Event extraction for systems biology by text mining the literature. Trends in biotechnology, 28(7):381-390, July.
-
(2010)
Trends in Biotechnology
, vol.28
, Issue.7
, pp. 381-390
-
-
Ananiadou, S.1
Pyysalo, S.2
Tsujii, J.3
Kell, D.B.4
-
4
-
-
84908421876
-
Eventbased text mining for biology and functional genomics
-
Sophia Ananiadou, Paul Thompson, Raheel Nawaz, John McNaught, and Douglas B Kell. 2014. Eventbased text mining for biology and functional genomics. Briefings in functional genomics, page elu015.
-
(2014)
Briefings in Functional Genomics
, pp. elu015
-
-
Ananiadou, S.1
Thompson, P.2
Nawaz, R.3
McNaught, J.4
Kell, D.B.5
-
6
-
-
85011023041
-
Causal relation extraction
-
Eduardo Blanco, Nuria Castell, and Dan I Moldovan. 2008. Causal relation extraction. In LREC, pages 310-313.
-
(2008)
LREC
, pp. 310-313
-
-
Blanco, E.1
Castell, N.2
Moldovan, D.I.3
-
7
-
-
26444609607
-
Causal relation extraction using cue phrase and lexical pair probabilities
-
Springer
-
Du-Seong Chang and Key-Sun Choi. 2005. Causal relation extraction using cue phrase and lexical pair probabilities. In Natural Language Processing-IJCNLP 2004, pages 61-70. Springer.
-
(2005)
Natural Language Processing-IJCNLP 2004
, pp. 61-70
-
-
Chang, D.-S.1
Choi, K.-S.2
-
8
-
-
17244380380
-
A survey of current work in biomedical text mining
-
March
-
Aaron M. Cohen and William R. Hersh. 2005. A survey of current work in biomedical text mining. Briefings in Bioinformatics, 6(1):57-71, March.
-
(2005)
Briefings in Bioinformatics
, vol.6
, Issue.1
, pp. 57-71
-
-
Cohen, A.M.1
Hersh, W.R.2
-
9
-
-
38949105955
-
Getting started in text mining
-
January
-
Kevin Bretonnel Cohen and Lawrence Hunter. 2008. Getting Started in Text Mining. PLoS Comput Biol, 4(1):e20+, January.
-
(2008)
PLoS Comput Biol
, vol.4
, Issue.1
, pp. e20
-
-
Cohen, K.B.1
Hunter, L.2
-
10
-
-
77956315873
-
Sentence compression as tree transduction
-
Trevor Cohn and Mirella Lapata. 2009. Sentence compression as tree transduction. J. Artif. Int. Res., 34(1):637-674.
-
(2009)
J. Artif. Int. Res.
, vol.34
, Issue.1
, pp. 637-674
-
-
Cohn, T.1
Lapata, M.2
-
11
-
-
0034887203
-
Creating the gene ontology resource: Design and implementation
-
August
-
The Gene Ontology Consortium. 2001. Creating the gene ontology resource: Design and implementation. Genome Research, 11(8):1425-1433, August.
-
(2001)
Genome Research
, vol.11
, Issue.8
, pp. 1425-1433
-
-
The Gene Ontology Consortium1
-
13
-
-
80052413870
-
Exploratory text mining of ocean law to measure overlapping agency and jurisdictional authority
-
Digital Government Society of North America
-
Julia A Ekstrom and Gloria T Lau. 2008. Exploratory text mining of ocean law to measure overlapping agency and jurisdictional authority. In Proceedings of the 2008 international conference on Digital government research, pages 53-62. Digital Government Society of North America.
-
(2008)
Proceedings of the 2008 International Conference on Digital Government Research
, pp. 53-62
-
-
Ekstrom, J.A.1
Lau, G.T.2
-
14
-
-
84883417479
-
Excitatory or inhibitory: A new semantic orientation extracts contradiction and causality from the web
-
Stroudsburg, PA, USA. Association for Computational Linguistics
-
Chikara Hashimoto, Kentaro Torisawa, Stijn De Saeger, Jong H. Oh, and Jun'ichi Kazama. 2012. Excitatory or inhibitory: A new semantic orientation extracts contradiction and causality from the web. In Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, EMNLP-CoNLL'12, pages 619-630, Stroudsburg, PA, USA. Association for Computational Linguistics.
-
(2012)
Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, EMNLP-CoNLL'12
, pp. 619-630
-
-
Hashimoto, C.1
Torisawa, K.2
De Saeger, S.3
Oh, J.H.4
Kazama, J.5
-
15
-
-
85036387096
-
Untangling text data mining
-
Stroudsburg, PA, USA. Association for Computational Linguistics
-
Marti A. Hearst. 1999. Untangling text data mining. In Proceedings of the 37th Annual Meeting of the Association for Computational Linguistics on Computational Linguistics, ACL'99, pages 3-10, Stroudsburg, PA, USA. Association for Computational Linguistics.
-
(1999)
Proceedings of the 37th Annual Meeting of the Association for Computational Linguistics on Computational Linguistics, ACL'99
, pp. 3-10
-
-
Hearst, M.A.1
-
16
-
-
33947304181
-
Overview of BioCreAtlvE: Critical assessment of information extraction for biology
-
Lynette Hirschman, Alexander Yeh, Christian Blaschke, and Alfonso Valencia. 2005. Overview of BioCreAtlvE: critical assessment of information extraction for biology. BMC Bioinformatics, 6(Suppl 1):S1+.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S1
-
-
Hirschman, L.1
Yeh, A.2
Blaschke, C.3
Valencia, A.4
-
17
-
-
0035042776
-
A literature network of human genes for high-throughput analysis of gene expression
-
T. K. Jenssen, A. Laegreid, J. Komorowski, and E. Hovig. 2001. A literature network of human genes for high-throughput analysis of gene expression. Nat Genet, 28:21-28.
-
(2001)
Nat Genet
, vol.28
, pp. 21-28
-
-
Jenssen, T.K.1
Laegreid, A.2
Komorowski, J.3
Hovig, E.4
-
18
-
-
0040325313
-
Sentence reduction for automatic text summarization
-
Association for Computational Linguistics
-
Hongyan Jing. 2000. Sentence reduction for automatic text summarization. In Proceedings of the sixth conference on Applied natural language processing, pages 310-315. Association for Computational Linguistics.
-
(2000)
Proceedings of the Sixth Conference on Applied Natural Language Processing
, pp. 310-315
-
-
Jing, H.1
-
19
-
-
4944229711
-
GE-NIA corpus-A semantically annotated corpus for bio-textmining
-
July
-
J. D. Kim, T. Ohta, Y. Tateisi, and J. Tsujii. 2003. GE-NIA corpus-A semantically annotated corpus for bio-textmining. Bioinformatics, 19(suppl 1):i180-i182, July.
-
(2003)
Bioinformatics
, vol.19
, pp. i180-i182
-
-
Kim, J.D.1
Ohta, T.2
Tateisi, Y.3
Tsujii, J.4
-
20
-
-
0036641584
-
Summarization beyond sentence extraction: A probabilistic approach to sentence compression
-
Kevin Knight and Daniel Marcu. 2002. Summarization beyond sentence extraction: A probabilistic approach to sentence compression. Artificial Intelligence, 139(1):91-107.
-
(2002)
Artificial Intelligence
, vol.139
, Issue.1
, pp. 91-107
-
-
Knight, K.1
Marcu, D.2
-
21
-
-
36148974743
-
Global nanotechnology research literature overview
-
Three Special Sections: Assessment of China's and India's Science and Technology Literature Nanotechnology Policy Minding the Gap: Previewing the Potential of Breakthrough Technologies
-
Ronald N. Kostoff, Raymond G. Koytcheff, and Clifford G. Y. Lau. 2007. Global nanotechnology research literature overview. Technological Forecasting and Social Change, 74(9):1733-1747. Three Special Sections: Assessment of China's and India's Science and Technology Literature Nanotechnology Policy Minding the Gap: Previewing the Potential of Breakthrough Technologies.
-
(2007)
Technological Forecasting and Social Change
, vol.74
, Issue.9
, pp. 1733-1747
-
-
Kostoff, R.N.1
Koytcheff, R.G.2
Lau, C.G.Y.3
-
22
-
-
51049110331
-
Linking genes to literature: Text mining, information extraction, and retrieval applications for biology
-
September
-
Martin Krallinger, Alfonso Valencia, and Lynette Hirschman. 2008. Linking genes to literature: text mining, information extraction, and retrieval applications for biology. Genome Biology, 9(Suppl 2):S8+, September.
-
(2008)
Genome Biology
, vol.9
, pp. S8
-
-
Krallinger, M.1
Valencia, A.2
Hirschman, L.3
-
24
-
-
85117622017
-
The Stanford CoreNLP natural language processing toolkit
-
Christopher D. Manning, Mihai Surdeanu, John Bauer, Jenny Finkel, Steven J. Bethard, and David McClosky. 2014. The Stanford CoreNLP natural language processing toolkit. In Proceedings of 52nd Annual Meeting of the Association for Computational Linguistics: System Demonstrations, pages 55-60.
-
(2014)
Proceedings of 52nd Annual Meeting of the Association for Computational Linguistics: System Demonstrations
, pp. 55-60
-
-
Manning, C.D.1
Surdeanu, M.2
Bauer, J.3
Finkel, J.4
Bethard, S.J.5
McClosky, D.6
-
25
-
-
84947712189
-
Towards text mining in climate science: Extraction of quantitative variables and their relations
-
Reykjavik, Iceland
-
Erwin Marsi, Pinar Oztiirk, Elias Aamot, Gleb Sizov, and Murat V Ardelan. 2014. Towards text mining in climate science: Extraction of quantitative variables and their relations. In Proceedings of the Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing, Reykjavik, Iceland.
-
(2014)
Proceedings of the Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing
-
-
Marsi, E.1
Oztiirk, P.2
Aamot, E.3
Sizov, G.4
Ardelan, M.V.5
-
26
-
-
84864036149
-
Boosting automatic event extraction from the literature using domain adaptation and coreference resolution
-
Makoto Miwa, Paul Thompson, and Sophia Ananiadou. 2012. Boosting automatic event extraction from the literature using domain adaptation and coreference resolution. Bioinformatics, 28(13):1759-1765.
-
(2012)
Bioinformatics
, vol.28
, Issue.13
, pp. 1759-1765
-
-
Miwa, M.1
Thompson, P.2
Ananiadou, S.3
-
29
-
-
33847608309
-
Biolnfer: A corpus for information extraction in the biomedical domain
-
Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Bjome, Jorma Boberg, Jouni Jarvinen, and Tapio Salakoski. 2007. Biolnfer: a corpus for information extraction in the biomedical domain. BMC Bioinformatics, 8:50.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 50
-
-
Pyysalo, S.1
Ginter, F.2
Heimonen, J.3
Bjome, J.4
Boberg, J.5
Jarvinen, J.6
Salakoski, T.7
-
30
-
-
84866453775
-
Overview of the ID, EPI and REL tasks of BioNLP shared task 2011
-
June
-
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Dan Sullivan, Chunhong Mao, Chunxia Wang, Bruno Sobral, Jun'ichi Tsujii, and Sophia Ananiadou. 2012. Overview of the ID, EPI and REL tasks of BioNLP shared task 2011. BMC Bioinformatics, 13(Suppl 11):S2+, June.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S2
-
-
Pyysalo, S.1
Ohta, T.2
Rak, R.3
Sullivan, D.4
Mao, C.5
Wang, C.6
Sobral, B.7
Tsujii, J.8
Ananiadou, S.9
-
31
-
-
84879367043
-
Ppinterfmder-A mining tool for extracting causal relations on human proteins from literature
-
2013
-
Kalpana Raja, Suresh Subramani, and Jeyakumar Natarajan. 2013. Ppinterfmder-A mining tool for extracting causal relations on human proteins from literature. Database (Oxford), 2013: bas052.
-
(2013)
Database (Oxford)
, pp. bas052
-
-
Raja, K.1
Subramani, S.2
Natarajan, J.3
-
32
-
-
74549117176
-
Biomedical text mining and its applications
-
December
-
Raul Rodriguez-Esteban. 2009. Biomedical Text Mining and Its Applications. PLoS Comput Biol, 5(12):e1000597+, December.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.12
, pp. e1000597
-
-
Rodriguez-Esteban, R.1
-
33
-
-
84868288681
-
Information extraction
-
March
-
Sunita Sarawagi. 2008. Information extraction. Found. Trends databases, 1(3):261-377, March.
-
(2008)
Found. Trends Databases
, vol.1
, Issue.3
, pp. 261-377
-
-
Sarawagi, S.1
-
35
-
-
84875865035
-
Biomedical text mining: A survey of recent progress
-
Charu C. Aggarwal and ChengXiang Zhai, editors, Springer US
-
Matthew S. Simpson and Dina Demner-Fushman. 2012. Biomedical Text Mining: A Survey of Recent Progress. In Charu C. Aggarwal and ChengXiang Zhai, editors, Mining Text Data, pages 465-517. Springer US.
-
(2012)
Mining Text Data
, pp. 465-517
-
-
Simpson, M.S.1
Demner-Fushman, D.2
-
36
-
-
0031125707
-
An interactive system for finding complementary literatures: A stimulus to scientific discovery
-
April
-
Don R. Swanson and Neil R. Smalheiser. 1997. An interactive system for finding complementary literatures: a stimulus to scientific discovery. Artificial Intelligence, 91(2):183-203, April.
-
(1997)
Artificial Intelligence
, vol.91
, Issue.2
, pp. 183-203
-
-
Swanson, D.R.1
Smalheiser, N.R.2
-
37
-
-
0022786956
-
Fish oil, raynaud's syndrome, and undiscovered public knowledge
-
Don R. Swanson. 1986. Fish oil, raynaud's syndrome, and undiscovered public knowledge. Perspectives in biology and medicine, 30(1):7-18.
-
(1986)
Perspectives in Biology and Medicine
, vol.30
, Issue.1
, pp. 7-18
-
-
Swanson, D.R.1
-
38
-
-
0024031265
-
Migraine and magnesium: Eleven neglected connections
-
Don R. Swanson. 1988. Migraine and magnesium: eleven neglected connections. Perspectives in Biology and Medicine, 31(4):526-557.
-
(1988)
Perspectives in Biology and Medicine
, vol.31
, Issue.4
, pp. 526-557
-
-
Swanson, D.R.1
-
40
-
-
84955313844
-
KYOTO: An open platform for mining facts
-
Beijing, China, August. Coling 2010 Organizing Committee
-
Piek Vossen, German Rigau, Eneko Agirre, Aitor Soroa, Monica Monachini, and Roberto Bartolini. 2010. KYOTO: an open platform for mining facts. In Proceedings of the 6th Workshop on Ontologies and Lexical Resources, pages 1-10, Beijing, China, August. Coling 2010 Organizing Committee.
-
(2010)
Proceedings of the 6th Workshop on Ontologies and Lexical Resources
, pp. 1-10
-
-
Vossen, P.1
Rigau, G.2
Agirre, E.3
Soroa, A.4
Monachini, M.5
Bartolini, R.6
-
41
-
-
84880527540
-
GeoDeepDive: Statistical inference using familiar data-processing languages
-
New York, NY, USA. ACM
-
Ce Zhang, Vidhya Govindaraju, Jackson Borchardt, Tim Foltz, Christopher Re, and Shanan Peters. 2013. GeoDeepDive: Statistical inference using familiar data-processing languages. In Proceedings of the 2013 ACM SIGMOD International Conference on Management of Data, SIGMOD'13, pages 993-996, New York, NY, USA. ACM.
-
(2013)
Proceedings of the 2013 ACM SIGMOD International Conference on Management of Data, SIGMOD'13
, pp. 993-996
-
-
Zhang, C.1
Govindaraju, V.2
Borchardt, J.3
Foltz, T.4
Re, C.5
Peters, S.6
-
42
-
-
84900928484
-
Advanced literature-mining tools
-
David Edwards, Jason Stajich, and David Hansen, editors, Springer New York
-
Pierre Zweigenbaum and Dina Demner-Fushman. 2009. Advanced Literature-Mining Tools. In David Edwards, Jason Stajich, and David Hansen, editors, Bioinformatics, pages 347-380. Springer New York.
-
(2009)
Bioinformatics
, pp. 347-380
-
-
Zweigenbaum, P.1
Demner-Fushman, D.2
-
43
-
-
36348990139
-
Frontiers of biomedical text mining: Current progress
-
September
-
Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, and Kevin B. Cohen. 2007. Frontiers of biomedical text mining: current progress. Briefings in Bioinformatics, 8(5):358-375, September.
-
(2007)
Briefings in Bioinformatics
, vol.8
, Issue.5
, pp. 358-375
-
-
Zweigenbaum, P.1
Demner-Fushman, D.2
Yu, H.3
Cohen, K.B.4
|