-
1
-
-
84874828197
-
Aggressive regimens for multidrugresistant tuberculosis decrease all-cause mortality
-
Mitnick CD, Franke MF, Rich ML, Alcantara Viru FA, Appleton SC, Atwood SS, Bayona JN, Bonilla CA, Chalco K, Fraser HSF, Furin JJ, Guerra D, Hurtado RM, Joseph K, Llaro K, Mestanza L, Mukherjee JS, Muñoz M, Palacios E, Sanchez E, Seung KJ, Shin SS, Sloutsky A, Tolman AW, Becerra MC. 2013. Aggressive regimens for multidrugresistant tuberculosis decrease all-cause mortality. PLoS One 8:e58664. http://dx.doi.org/10.1371/journal.pone.0058664.
-
(2013)
PLoS One
, vol.8
, pp. e58664
-
-
Mitnick, C.D.1
Franke, M.F.2
Rich, M.L.3
Alcantara Viru, F.A.4
Appleton, S.C.5
Atwood, S.S.6
Bayona, J.N.7
Bonilla, C.A.8
Chalco, K.9
Fraser, H.S.F.10
Furin, J.J.11
Guerra, D.12
Hurtado, R.M.13
Joseph, K.14
Llaro, K.15
Mestanza, L.16
Mukherjee, J.S.17
Muñoz, M.18
Palacios, E.19
Sanchez, E.20
Seung, K.J.21
Shin, S.S.22
Sloutsky, A.23
Tolman, A.W.24
Becerra, M.C.25
more..
-
2
-
-
34948893503
-
Fluoroquinolones for the treatment of pulmonary tuberculosis
-
Moadebi S, Harder CK, Fitzgerald MJ, Elwood KR, Marra F. 2007. Fluoroquinolones for the treatment of pulmonary tuberculosis. Drugs 67:2077-2099. http://dx.doi.org/10.2165/00003495-200767140-00007.
-
(2007)
Drugs
, vol.67
, pp. 2077-2099
-
-
Moadebi, S.1
Harder, C.K.2
Fitzgerald, M.J.3
Elwood, K.R.4
Marra, F.5
-
3
-
-
77953771813
-
Treatment outcomes among patients with extensively drug-resistant tuberculosis: Systematic review and meta-analysis
-
Jacobson KR, Tierney DB, Jeon CY, Mitnick CD, Murray MB. 2010. Treatment outcomes among patients with extensively drug-resistant tuberculosis: Systematic review and meta-analysis. Clin Infect Dis 51:6-14. http://dx.doi.org/10.1086/653115.
-
(2010)
Clin Infect Dis
, vol.51
, pp. 6-14
-
-
Jacobson, K.R.1
Tierney, D.B.2
Jeon, C.Y.3
Mitnick, C.D.4
Murray, M.B.5
-
4
-
-
84923305881
-
Concordance of Mycobacterium tuberculosis fluoroquinolone resistance testing: Implications for treatment
-
Farhat MR, Mitnick CD, Franke MF, Kaur D, Sloutsky A, Murray M, Jacobson KR. 2015. Concordance of Mycobacterium tuberculosis fluoroquinolone resistance testing: Implications for treatment. Int J Tuberc Lung Dis 19:339-341. http://dx.doi.org/10.5588/ijtld.14.0814.
-
(2015)
Int J Tuberc Lung Dis
, vol.19
, pp. 339-341
-
-
Farhat, M.R.1
Mitnick, C.D.2
Franke, M.F.3
Kaur, D.4
Sloutsky, A.5
Murray, M.6
Jacobson, K.R.7
-
6
-
-
84858665539
-
A systematic review of gyrase mutations associated with fluoroquinolone-resistant Mycobacterium tuberculosis and a proposed gyrase numbering system
-
Maruri F, Sterling TR, Kaiga AW, Blackman A, Van Der Heijden YF, Mayer C, Cambau E, Aubry A. 2012. A systematic review of gyrase mutations associated with fluoroquinolone-resistant Mycobacterium tuberculosis and a proposed gyrase numbering system. J Antimicrob Chemother 67:819-831. http://dx.doi.org/10.1093/jac/dkr566.
-
(2012)
J Antimicrob Chemother
, vol.67
, pp. 819-831
-
-
Maruri, F.1
Sterling, T.R.2
Kaiga, A.W.3
Blackman, A.4
Van Der Heijden, Y.F.5
Mayer, C.6
Cambau, E.7
Aubry, A.8
-
7
-
-
66749110456
-
Feasibility of the Geno-Type MTBDRsl assay for fluoroquinolone, amikacin-capreomycin, and ethambutol resistance testing of Mycobacterium tuberculosis strains and clinical specimens
-
Hillemann D, Rüsch-Gerdes S, Richter E. 2009. Feasibility of the Geno-Type MTBDRsl assay for fluoroquinolone, amikacin-capreomycin, and ethambutol resistance testing of Mycobacterium tuberculosis strains and clinical specimens. J Clin Microbiol 47:1767-1772. http://dx.doi.org/10.1128/JCM.00081-09.
-
(2009)
J Clin Microbiol
, vol.47
, pp. 1767-1772
-
-
Hillemann, D.1
Rüsch-Gerdes, S.2
Richter, E.3
-
8
-
-
29944444255
-
Novel gyrase mutations in quinolone-resistant and-hypersusceptible clinical isolates of Mycobacterium tuberculosis: Functional analysis of mutant enzymes
-
Aubry A, Veziris N, Cambau E, Truffot-Pernot C, Jarlier V, Fisher LM. 2006. Novel gyrase mutations in quinolone-resistant and-hypersusceptible clinical isolates of Mycobacterium tuberculosis: Functional analysis of mutant enzymes. Antimicrob Agents Chemother 50:104-112. http://dx.doi.org/10.1128/AAC.50.1.104-112.2006.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 104-112
-
-
Aubry, A.1
Veziris, N.2
Cambau, E.3
Truffot-Pernot, C.4
Jarlier, V.5
Fisher, L.M.6
-
9
-
-
67749120061
-
Sequence analyses of just four genes to detect extensively drug-resistant Mycobacterium tuberculosis strains in multidrug-resistant tuberculosis patients undergoing treatment
-
Feuerriegel S, Cox HS, Zarkua N, Karimovich HA, Braker K, Rüsch-Gerdes S, Niemann S. 2009. Sequence analyses of just four genes to detect extensively drug-resistant Mycobacterium tuberculosis strains in multidrug-resistant tuberculosis patients undergoing treatment. Antimicrob Agents Chemother 53:3353-3356. http://dx.doi.org/10.1128/AAC.00050-09.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 3353-3356
-
-
Feuerriegel, S.1
Cox, H.S.2
Zarkua, N.3
Karimovich, H.A.4
Braker, K.5
Rüsch-Gerdes, S.6
Niemann, S.7
-
10
-
-
77956497725
-
Rapid molecular detection of tuberculosis and rifampin resistance
-
Boehme CC, Nabeta P, Hillemann D, Nicol MP, Shenai S, Krapp F, Allen J, Tahirli R, Blakemore R, Rustomjee R, Milovic A, Jones M, O'Brien SM, Persing DH, Ruesch-Gerdes S, Gotuzzo E, Rodrigues C, Alland D, Perkins MD. 2010. Rapid molecular detection of tuberculosis and rifampin resistance. N Engl J Med 363:1005-1015. http://dx.doi.org/10.1056/NEJMoa0907847.
-
(2010)
N Engl J Med
, vol.363
, pp. 1005-1015
-
-
Boehme, C.C.1
Nabeta, P.2
Hillemann, D.3
Nicol, M.P.4
Shenai, S.5
Krapp, F.6
Allen, J.7
Tahirli, R.8
Blakemore, R.9
Rustomjee, R.10
Milovic, A.11
Jones, M.12
O'Brien, S.M.13
Persing, D.H.14
Ruesch-Gerdes, S.15
Gotuzzo, E.16
Rodrigues, C.17
Alland, D.18
Perkins, M.D.19
-
11
-
-
77951874370
-
Detection by GenoType MTBDRsl test of complex mechanisms of resistance to second-line drugs and ethambutol in multidrug-resistant Mycobacterium tuberculosis complex isolates
-
Brossier F, Veziris N, Aubry A, Jarlier V, Sougakoff W. 2010. Detection by GenoType MTBDRsl test of complex mechanisms of resistance to second-line drugs and ethambutol in multidrug-resistant Mycobacterium tuberculosis complex isolates. J Clin Microbiol 48:1683-1689. http://dx.doi.org/10.1128/JCM.01947-09.
-
(2010)
J Clin Microbiol
, vol.48
, pp. 1683-1689
-
-
Brossier, F.1
Veziris, N.2
Aubry, A.3
Jarlier, V.4
Sougakoff, W.5
-
12
-
-
77956537137
-
Tuberculosis diagnosis-time for a game change
-
Small PM, Pai M. 2010. Tuberculosis diagnosis-time for a game change. N Engl J Med 363:1070-1071. http://dx.doi.org/10.1056/NEJMe1008496.
-
(2010)
N Engl J Med
, vol.363
, pp. 1070-1071
-
-
Small, P.M.1
Pai, M.2
-
13
-
-
84927142797
-
Drug resistance in Mycobacterium tuberculosis: Molecular mechanisms challenging fluoroquinolones and pyrazinamide effectiveness
-
Miotto P, Cirillo DM, Migliori GB. 2015. Drug resistance in Mycobacterium tuberculosis: Molecular mechanisms challenging fluoroquinolones and pyrazinamide effectiveness. Chest 147:1135-1143. http://dx.doi.org/10.1378/chest.14-1286.
-
(2015)
Chest
, vol.147
, pp. 1135-1143
-
-
Miotto, P.1
Cirillo, D.M.2
Migliori, G.B.3
-
14
-
-
84937516929
-
Diagnostic accuracy study of multiplex PCR for detecting tuberculosis drug resistance
-
Molina-Moya B, Lacoma A, Prat C, Pimkina E, Diaz J, García-Sierra N, Haba L, Maldonado J, Samper S, Ruiz-Manzano J, Ausina V, Dominguez J. 2015. Diagnostic accuracy study of multiplex PCR for detecting tuberculosis drug resistance. J Infect 71:220-230. http://dx.doi.org/10.1016/j.jinf.2015.03.011.
-
(2015)
J Infect
, vol.71
, pp. 220-230
-
-
Molina-Moya, B.1
Lacoma, A.2
Prat, C.3
Pimkina, E.4
Diaz, J.5
García-Sierra, N.6
Haba, L.7
Maldonado, J.8
Samper, S.9
Ruiz-Manzano, J.10
Ausina, V.11
Dominguez, J.12
-
15
-
-
84862975750
-
New insights into fluoroquinolone resistance in Mycobacterium tuberculosis: Functional genetic analysis of gyrA and gyrB mutations
-
Malik S, Willby M, Sikes D, Tsodikov OV, Posey JE. 2012. New insights into fluoroquinolone resistance in Mycobacterium tuberculosis: Functional genetic analysis of gyrA and gyrB mutations. PLoS One 7:e39754. http://dx.doi.org/10.1371/journal.pone.0039754.
-
(2012)
PLoS One
, vol.7
, pp. e39754
-
-
Malik, S.1
Willby, M.2
Sikes, D.3
Tsodikov, O.V.4
Posey, J.E.5
-
16
-
-
84903291815
-
Global epistasis makes adaptation predictable despite sequence-level stochasticity
-
Kryazhimskiy S, Rice DP, Jerison ER, Desai MM. 2014. Global epistasis makes adaptation predictable despite sequence-level stochasticity. Science 344:1519-1522. http://dx.doi.org/10.1126/science.1250939.
-
(2014)
Science
, vol.344
, pp. 1519-1522
-
-
Kryazhimskiy, S.1
Rice, D.P.2
Jerison, E.R.3
Desai, M.M.4
-
17
-
-
54149088214
-
Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems
-
Phillips PC. 2008. Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems. Nat Rev Genet 9:855-867. http://dx.doi.org/10.1038/nrg2452.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 855-867
-
-
Phillips, P.C.1
-
18
-
-
79952793415
-
Second-order selection for evolvability in a large Escherichia coli population
-
Woods RJ, Barrick JE, Cooper TF, Shrestha U, Kauth MR, Lenski RE. 2011. Second-order selection for evolvability in a large Escherichia coli population. Science 331:1433-1436. http://dx.doi.org/10.1126/science .1198914.
-
(2011)
Science
, vol.331
, pp. 1433-1436
-
-
Woods, R.J.1
Barrick, J.E.2
Cooper, T.F.3
Shrestha, U.4
Kauth, M.R.5
Lenski, R.E.6
-
20
-
-
0037685262
-
Multiplexed genotyping with sequence-tagged molecular inversion probes
-
Hardenbol P, Banér J, Jain M, Nilsson M, Namsaraev EA, Karlin-Neumann GA, Fakhrai-Rad H, Ronaghi M, Willis TD, Landegren U, Davis RW. 2003. Multiplexed genotyping with sequence-tagged molecular inversion probes. Nat Biotechnol 21:673-678. http://dx.doi.org/10.1038/nbt821.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 673-678
-
-
Hardenbol, P.1
Banér, J.2
Jain, M.3
Nilsson, M.4
Namsaraev, E.A.5
Karlin-Neumann, G.A.6
Fakhrai-Rad, H.7
Ronaghi, M.8
Willis, T.D.9
Landegren, U.10
Davis, R.W.11
-
22
-
-
79953177468
-
Aligning short sequencing reads with Bowtie
-
Unit 11.7
-
Langmead B. 2010. Aligning short sequencing reads with Bowtie. Curr Protoc Bioinformatics Chapter 11:Unit 11.7. http://dx.doi.org/10.1002/0471250953.bi1107s32.
-
(2010)
Curr Protoc Bioinformatics Chapter
, vol.11
-
-
Langmead, B.1
-
23
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079. http://dx.doi.org/10.1093/bio informatics/btp352.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
24
-
-
78751697747
-
Molecular characterization of fluoroquinolone resistance in Mycobacterium tuberculosis: Functional analysis of gyrA mutation at position74
-
Lau RWT, Ho P-L, Kao RYT, Yew W-W, Lau TCK, Cheng VCC, Yuen K-Y, Tsui SKW, Chen X, Yam W-C. 2011. Molecular characterization of fluoroquinolone resistance in Mycobacterium tuberculosis: Functional analysis of gyrA mutation at position 74.Antimicrob Agents Chemother 55:608-614. http://dx.doi.org/10.1128/AAC.00920-10.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 608-614
-
-
Lau, R.W.T.1
Ho, P.-L.2
Kao, R.Y.T.3
Yew, W.-W.4
Lau, T.C.K.5
Cheng, V.C.C.6
Yuen, K.-Y.7
Tsui, S.K.W.8
Chen, X.9
Yam, W.-C.10
-
25
-
-
84942192606
-
Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: A retrospective cohort study
-
Modernizing Medical Microbiology (MMM) Informatics Group.
-
Walker TM, Kohl TA, Omar SV, Hedge J, Del Ojo Elias C, Bradley P, Iqbal Z, Feuerriegel S, Niehaus KE, Wilson DJ, Clifton DA, Kapatai G, Ip CLC, Bowden R, Drobniewski FA, Allix-Béguec C, Gaudin C, Parkhill J, Diel R, Supply P, Crook DW, Smith EG, Walker AS, Ismail N, Niemann S, Peto TEA, Modernizing Medical Microbiology (MMM) Informatics Group. 2015. Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: A retrospective cohort study. Lancet Infect Dis 15:1193-1202. http://dx.doi.org/10.1016/S1473-3099(15)00062-6.
-
(2015)
Lancet Infect Dis
, vol.15
, pp. 1193-1202
-
-
Walker, T.M.1
Kohl, T.A.2
Omar, S.V.3
Hedge, J.4
Del Ojo Elias, C.5
Bradley, P.6
Iqbal, Z.7
Feuerriegel, S.8
Niehaus, K.E.9
Wilson, D.J.10
Clifton, D.A.11
Kapatai, G.12
Ip, C.L.C.13
Bowden, R.14
Drobniewski, F.A.15
Allix-Béguec, C.16
Gaudin, C.17
Parkhill, J.18
Diel, R.19
Supply, P.20
Crook, D.W.21
Smith, E.G.22
Walker, A.S.23
Ismail, N.24
Niemann, S.25
Peto, T.E.A.26
more..
-
26
-
-
84961292226
-
Mechanisms of reduced susceptibility and genotypic prediction of antibiotic resistance in Prevotella isolated from cystic fibrosis (CF) and non-CF patients
-
Sherrard LJ, Schaible B, Graham KA, McGrath SJ, McIlreavey L, Hatch J, Wolfgang MC, Muhlebach MS, Gilpin DF, Schneiders T, Elborn JS, Tunney MM. 2014. Mechanisms of reduced susceptibility and genotypic prediction of antibiotic resistance in Prevotella isolated from cystic fibrosis (CF) and non-CF patients. J Antimicrob Chemother 69:2690-2698. http://dx.doi.org/10.1093/jac/dku192.
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 2690-2698
-
-
Sherrard, L.J.1
Schaible, B.2
Graham, K.A.3
McGrath, S.J.4
McIlreavey, L.5
Hatch, J.6
Wolfgang, M.C.7
Muhlebach, M.S.8
Gilpin, D.F.9
Schneiders, T.10
Elborn, J.S.11
Tunney, M.M.12
-
27
-
-
32644437364
-
Statistical characterisation of bacterial wild-type MIC value distributions and the determination of epidemiological cut-off values
-
Turnidge J, Kahlmeter G, Kronvall G. 2006. Statistical characterisation of bacterial wild-type MIC value distributions and the determination of epidemiological cut-off values. Clin Microbiol Infect 12:418-425. http://dx.doi.org/10.1111/j.1469-0691.2006.01377.x.
-
(2006)
Clin Microbiol Infect
, vol.12
, pp. 418-425
-
-
Turnidge, J.1
Kahlmeter, G.2
Kronvall, G.3
-
28
-
-
0030911908
-
Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
-
Kamerbeek J, Schouls L, Kolk A, Van Agterveld M, Van Soolingen D, Kuijper S, Bunschoten A, Molhuizen H, Shaw R, Goyal M, Van Embden J. 1997. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 35: 907-914.
-
(1997)
J Clin Microbiol
, vol.35
, pp. 907-914
-
-
Kamerbeek, J.1
Schouls, L.2
Kolk, A.3
Van Agterveld, M.4
Van Soolingen, D.5
Kuijper, S.6
Bunschoten, A.7
Molhuizen, H.8
Shaw, R.9
Goyal, M.10
Van Embden, J.11
-
29
-
-
0025952233
-
Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: Evaluation of an insertion sequencedependent DNA polymorphism as a tool in the epidemiology of tuberculosis
-
Van Soolingen D, Hermans PW, de Haas PE, Soll DR, Van Embden JD. 1991. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: Evaluation of an insertion sequencedependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol 29:2578-2586.
-
(1991)
J Clin Microbiol
, vol.29
, pp. 2578-2586
-
-
Van Soolingen, D.1
Hermans, P.W.2
De Haas, P.E.3
Soll, D.R.4
Van Embden, J.D.5
-
30
-
-
33646227714
-
Mycobacterium tuberculosis complex genetic diversity: Mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
-
Brudey K, Driscoll JR, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SA, Allix C, Aristimuño L, Arora J, Baumanis V, Binder L, Cafrune P, Cataldi A, Cheong S, Diel R, Ellermeier C, Evans JT, Fauville-Dufaux M, Ferdinand S, de Viedma DG, Garzelli C, Gazzola L, Gomes HM, Guttierez MC, Hawkey PM, Van Helden PD, Kadival GV, Kreiswirth BN, Kremer K, Kubin M, Kulkarni SP, Liens B, Lillebaek T, Ly HM, Martin C, Martin C, Mokrousov I, Narvskaïa O, Ngeow YF, Naumann L, Niemann S, Parwati I, Rahim Z, Rasolofo-Razanamparany V, Rasolonavalona T, Rossetti ML, Rüsch-Gerdes S, Sajduda A, Samper S, Shemyakin IG, Singh UB, Somoskovi A, Skuce RA, Van Soolingen D, Streicher EM, Suffys PN, Tortoli E, Tracevska T, Vincent V, Victor TC, Warren RM, Yap SF, Zaman K, Portaels F, Rastogi N, Sola C. 2006. Mycobacterium tuberculosis complex genetic diversity: Mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol 6:23. http://dx.doi.org/10.1186/1471-2180-6-23.
-
(2006)
BMC Microbiol
, vol.6
, pp. 23
-
-
Brudey, K.1
Driscoll, J.R.2
Rigouts, L.3
Prodinger, W.M.4
Gori, A.5
Al-Hajoj, S.A.6
Allix, C.7
Aristimuño, L.8
Arora, J.9
Baumanis, V.10
Binder, L.11
Cafrune, P.12
Cataldi, A.13
Cheong, S.14
Diel, R.15
Ellermeier, C.16
Evans, J.T.17
Fauville-Dufaux, M.18
Ferdinand, S.19
De Viedma, D.G.20
Garzelli, C.21
Gazzola, L.22
Gomes, H.M.23
Guttierez, M.C.24
Hawkey, P.M.25
Van Helden, P.D.26
Kadival, G.V.27
Kreiswirth, B.N.28
Kremer, K.29
Kubin, M.30
Kulkarni, S.P.31
Liens, B.32
Lillebaek, T.33
Ly, H.M.34
Martin, C.35
Martin, C.36
Mokrousov, I.37
Narvskaïa, O.38
Ngeow, Y.F.39
Naumann, L.40
Niemann, S.41
Parwati, I.42
Rahim, Z.43
Rasolofo-Razanamparany, V.44
Rasolonavalona, T.45
Rossetti, M.L.46
Rüsch-Gerdes, S.47
Sajduda, A.48
Samper, S.49
Shemyakin, I.G.50
Singh, U.B.51
Somoskovi, A.52
Skuce, R.A.53
Van Soolingen, D.54
Streicher, E.M.55
Suffys, P.N.56
Tortoli, E.57
Tracevska, T.58
Vincent, V.59
Victor, T.C.60
Warren, R.M.61
Yap, S.F.62
Zaman, K.63
Portaels, F.64
Rastogi, N.65
Sola, C.66
more..
-
31
-
-
61449239026
-
Tuberculosis drug resistance mutation database
-
Sandgren A, Strong M, Muthukrishnan P, Weiner BK, Church GM, Murray MB. 2009. Tuberculosis drug resistance mutation database. PLoS Med 6:e2. http://dx.doi.org/10.1371/journal.pmed.1000002.
-
(2009)
PLoS Med
, vol.6
, pp. e2
-
-
Sandgren, A.1
Strong, M.2
Muthukrishnan, P.3
Weiner, B.K.4
Church, G.M.5
Murray, M.B.6
-
32
-
-
0000122573
-
PHYLIP-phylogeny inference package (version 3.2)
-
Felsenstein J. 1989. PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
33
-
-
84907371489
-
A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
-
Coll F, McNerney R, Guerra-Assunção JA, Glynn JR, Perdigão J, Viveiros M, Portugal I, Pain A, Martin N, Clark TG. 2014. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nat Commun 5:4812. http://dx.doi.org/10.1038/ncomms5812.
-
(2014)
Nat Commun
, vol.5
, pp. 4812
-
-
Coll, F.1
McNerney, R.2
Guerra-Assunção, J.A.3
Glynn, J.R.4
Perdigão, J.5
Viveiros, M.6
Portugal, I.7
Pain, A.8
Martin, N.9
Clark, T.G.10
-
34
-
-
84898471871
-
Phylogenetic polymorphisms in antibiotic resistance genes of the Mycobacterium tuberculosis complex
-
Feuerriegel S, Köser CU, Niemann S. 2014. Phylogenetic polymorphisms in antibiotic resistance genes of the Mycobacterium tuberculosis complex. J Antimicrob Chemother 69:1205-1210. http://dx.doi.org/10.1093/jac/dkt535.
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 1205-1210
-
-
Feuerriegel, S.1
Köser, C.U.2
Niemann, S.3
-
35
-
-
84940054531
-
Diagnostic performance of the new version (v2.0) of GenoType MTBDRsl assay for detection of resistance to fluoroquinolones and second-line injectable drugs: A multicenter study
-
Tagliani E, Cabibbe AM, Miotto P, Borroni E, Toro JC, Mansjö M, Hoffner S, Hillemann D, Zalutskaya A, Skrahina A, Cirillo DM. 2015. Diagnostic performance of the new version (v2.0) of GenoType MTBDRsl assay for detection of resistance to fluoroquinolones and second-line injectable drugs: A multicenter study. J Clin Microbiol 53:2961-2969. http://dx.doi.org/10.1128/JCM.01257-15.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 2961-2969
-
-
Tagliani, E.1
Cabibbe, A.M.2
Miotto, P.3
Borroni, E.4
Toro, J.C.5
Mansjö, M.6
Hoffner, S.7
Hillemann, D.8
Zalutskaya, A.9
Skrahina, A.10
Cirillo, D.M.11
-
36
-
-
84892459023
-
Systematic review of allelic exchange experiments aimed at identifying mutations that confer drug resistance in Mycobacterium tuberculosis
-
Nebenzahl-Guimaraes H, Jacobson KR, Farhat MR, Murray MB. 2014. Systematic review of allelic exchange experiments aimed at identifying mutations that confer drug resistance in Mycobacterium tuberculosis. J Antimicrob Chemother 69:331-342. http://dx.doi.org/10.1093/jac/dkt358.
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 331-342
-
-
Nebenzahl-Guimaraes, H.1
Jacobson, K.R.2
Farhat, M.R.3
Murray, M.B.4
-
37
-
-
84859565524
-
GyrA mutations and phenotypic susceptibility levels to ofloxacin and moxifloxacin in clinical isolates of Mycobacterium tuberculosis
-
Sirgel FA, Warren RM, Streicher EM, Victor TC, Van Helden PD, Böttger EC. 2012. gyrA mutations and phenotypic susceptibility levels to ofloxacin and moxifloxacin in clinical isolates of Mycobacterium tuberculosis. J Antimicrob Chemother 67:1088-1093. http://dx.doi.org/10.1093/jac/dks033.
-
(2012)
J Antimicrob Chemother
, vol.67
, pp. 1088-1093
-
-
Sirgel, F.A.1
Warren, R.M.2
Streicher, E.M.3
Victor, T.C.4
Van Helden, P.D.5
Böttger, E.C.6
-
38
-
-
84896374712
-
Association of gyrA/B mutations and resistance levels to fluoroquinolones in clinical isolates of Mycobacterium tuberculosis
-
Li J, Gao X, Luo T, Wu J, Sun G, Liu Q, Jiang Y, Zhang Y, Mei J, Gao Q. 2014. Association of gyrA/B mutations and resistance levels to fluoroquinolones in clinical isolates of Mycobacterium tuberculosis. Emerg Microbes Infect 3:e19. http://dx.doi.org/10.1038/emi.2014.21.
-
(2014)
Emerg Microbes Infect
, vol.3
, pp. e19
-
-
Li, J.1
Gao, X.2
Luo, T.3
Wu, J.4
Sun, G.5
Liu, Q.6
Jiang, Y.7
Zhang, Y.8
Mei, J.9
Gao, Q.10
-
39
-
-
79952338421
-
Rapid detection of fluoroquinolone-resistant and heteroresistant Mycobacterium tuberculosis by use of sloppy molecular beacons and dual melting-temperature codes in a real-time PCR assay
-
Chakravorty S, Aladegbami B, Thoms K, Lee JS, Lee EG, Rajan V, Cho E-J, Kim H, Kwak H, Kurepina N, Cho S-N, Kreiswirth B, Via LE, Barry CE, Alland D. 2011. Rapid detection of fluoroquinolone-resistant and heteroresistant Mycobacterium tuberculosis by use of sloppy molecular beacons and dual melting-temperature codes in a real-time PCR assay. J Clin Microbiol 49:932-940. http://dx.doi.org/10.1128/JCM.02271-10.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 932-940
-
-
Chakravorty, S.1
Aladegbami, B.2
Thoms, K.3
Lee, J.S.4
Lee, E.G.5
Rajan, V.6
Cho, E.-J.7
Kim, H.8
Kwak, H.9
Kurepina, N.10
Cho, S.-N.11
Kreiswirth, B.12
Via, L.E.13
Barry, C.E.14
Alland, D.15
-
40
-
-
85027948475
-
Characterization of gyrA and gyrB mutations and fluoroquinolone resistance in Mycobacterium tuberculosis clinical isolates from Hubei Province, China
-
Chen J, Chen Z, Li Y, Xia W, Chen X, Chen T, Zhou L, Xu B, Xu S. 2012. Characterization of gyrA and gyrB mutations and fluoroquinolone resistance in Mycobacterium tuberculosis clinical isolates from Hubei Province, China. Braz J Infect Dis 16:136-141. http://dx.doi.org/10.1016/S1413-8670(12)70294-5.
-
(2012)
Braz J Infect Dis
, vol.16
, pp. 136-141
-
-
Chen, J.1
Chen, Z.2
Li, Y.3
Xia, W.4
Chen, X.5
Chen, T.6
Zhou, L.7
Xu, B.8
Xu, S.9
-
41
-
-
40549084636
-
Population pharmacokinetics of levofloxacin, gatifloxacin, and moxifloxacin in adults with pulmonary tuberculosis
-
Peloquin CA, Hadad DJ, Molino LPD, Palaci M, Boom WH, Dietze R, Johnson JL. 2008. Population pharmacokinetics of levofloxacin, gatifloxacin, and moxifloxacin in adults with pulmonary tuberculosis. Antimicrob Agents Chemother 52:852-857. http://dx.doi.org/10.1128/AAC .01036-07.
-
(2008)
Antimicrob Agents Chemother
, vol.52
, pp. 852-857
-
-
Peloquin, C.A.1
Hadad, D.J.2
Molino, L.P.D.3
Palaci, M.4
Boom, W.H.5
Dietze, R.6
Johnson, J.L.7
-
42
-
-
79960700059
-
The ins and outs of Mycobacterium tuberculosis drug susceptibility testing
-
Böttger EC. 2011. The ins and outs of Mycobacterium tuberculosis drug susceptibility testing. Clin Microbiol Infect 17:1128-1134. http://dx.doi.org/10.1111/j.1469-0691.2011.03551.x.
-
(2011)
Clin Microbiol Infect
, vol.17
, pp. 1128-1134
-
-
Böttger, E.C.1
|