Correction: A bright and fast red fluorescent protein voltage indicator that reports neuronal activity in organotypic brain slices (Journal of Neuroscience, (2016) 36, 8, (2458-2472), 10.1523/JNEUROSCI.3484-15.2016);A bright and fast red fluorescent protein voltage indicator that reports neuronal activity in organotypic brain slices

Journal of Neuroscience

Volumn 36, Issue 8, 2016, Pages 2458-2472

  Abdelfattah, Ahmed S ^a   Farhi, Samouil L ^b   Zhao, Yongxin ^a   Brinks, Daan ^b   Zou, Peng ^b   Ruangkittisakul, Araya ^a   Platisa, Jelena ^c,d   Pieribone, Vincent A ^c,d   Ballanyi, Klaus ^a   Cohen, Adam E ^b,e,f   Campbell, Robert E ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b HARVARD UNIVERSITY   (United States)

^c JOHN B PIERCE LABORATORY   (United States)

^d YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e HARVARD UNIVERSITY   (United States)

^f HARVARD UNIVERSITY   (United States)

Author keywords

Biosensors; Fluorescence imaging; Fluorescent proteins; Genetically encoded indicators; Protein engineering; Voltage imaging

Indexed keywords

RED FLUORESCENT PROTEIN; FLUORESCENT DYE; PHOTOPROTEIN;

AGAR GEL ELECTROPHORESIS; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; AUTOFLUORESCENCE; BLEACHING; BRAIN FUNCTION; CONTROLLED STUDY; ELECTROPHYSIOLOGY; FLUORESCENT INDICATOR FOR VOLTAGE IMAGING RED; GENE LIBRARY; GENETIC VARIABILITY; HIPPOCAMPUS; HUMAN; HUMAN CELL; MOLECULAR BIOLOGY; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN ENGINEERING; PROTEIN EXPRESSION; RAT; ULTRAVIOLET SPECTROPHOTOMETRY; VOLTAGE SENSITIVE DYE IMAGING; ANIMAL; CELL CULTURE; CHEMISTRY; FEMALE; FLUORESCENCE MICROSCOPY; HEK293 CELL LINE; HELA CELL LINE; MALE; NERVE CELL; NEWBORN; ORGAN CULTURE TECHNIQUE; PHYSIOLOGY; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; SPRAGUE DAWLEY RAT;

ANIMALS; ANIMALS, NEWBORN; CELLS, CULTURED; FEMALE; FLUORESCENT DYES; HEK293 CELLS; HELA CELLS; HIPPOCAMPUS; HUMANS; LUMINESCENT PROTEINS; MALE; MICROSCOPY, FLUORESCENCE; NEURONS; ORGAN CULTURE TECHNIQUES; RATS; RATS, SPRAGUE-DAWLEY; REAL-TIME POLYMERASE CHAIN REACTION;

EID: 84959386417     PISSN: 02706474     EISSN: 15292401     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.0291-18.2018     Document Type: Erratum

References (53)

1. Akemann W, Mutoh H, Perron A, Park YK, Iwamoto Y, Knöpfel T (2012) Imaging neural circuit dynamics with a voltage-sensitive fluorescent protein. J Neurophysiol 108:2323-2337. CrossRef Medline
2. Akerboom J, Carreras Calderón N, Tian L, Wabnig S, Prigge M, Tolö J, Gordus A, Orger MB, Severi KE, Macklin JJ, Patel R, Pulver SR, Wardill TJ, Fischer E, Schüler C, Chen TW, Sarkisyan KS, Marvin JS, Bargmann CI, Kim DS, et al. (2013) Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics. Front Mol Neurosci 6:2. Medline
3. Alford SC, Wu J, Zhao Y, Campbell RE, Knöpfel T (2013) Optogenetic reporters. Biol Cell 105:14 -29. CrossRef Medline
4. Ataka K, PieriboneVA (2002) Agenetically targetable fluorescent probe of channel gating with rapid kinetics. Biophys J 82:509-516. CrossRef Medline
5. Baird GS, Zacharias DA, Tsien RY (1999) Circular permutation and receptor insertion within green fluorescent proteins. Proc Natl Acad Sci U S A 96:11241-11246. CrossRef Medline
6. Banker G, GoslinK (1998) Culturing nerve cells, Ed 2. Cambridge, MA: MIT.
7. Barnett L, Platisa J, Popovic M, Pieribone VA, Hughes T (2012) A fluorescent, genetically-encoded voltage probe capable of resolving action potentials. PLoS One 7:e43454. CrossRef Medline
8. Brinks D, Klein AJ, Cohen AE (2015) Two-photon lifetime imaging of voltage indicating proteins as a probe of absolute membrane voltage. Biophys J 109:914 -921. CrossRef Medline
9. Brown JE, Cohen LB, De Weer P, Pinto LH, Ross WN, Salzberg BM (1975) Rapid changes in intracellular free calcium concentration: detection by metallochromic indicator dyes in squid giant axon. Biophys J 15:1155-1160. CrossRef Medline
10. Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR (2013) Improved tools for the Brainbow toolbox. Nat Methods 10:540 -547. CrossRef Medline
11. Chen TW, Wardill TJ, Sun Y, Pulver SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V, Looger LL, Svoboda K, Kim DS (2013) Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature 499:295-300. CrossRef Medline
12. Cheng Z, Campbell RE (2006) Assessing the structural stability of designed beta- hairpin peptides in the cytoplasm of live cells. Chembiochem 7:1147-1150. CrossRef Medline
13. Cohen MR, Maunsell JH (2009) Attention improves performance primarily by reducing interneuronal correlations. Nat Neurosci 12: 1594 -1600. CrossRef Medline
14. Davila HV, Salzberg BM, Cohen LB, Waggoner AS (1973) A large change in axon fluorescence that provides a promising method for measuring membrane potential. Nat New Biol 241:159 -160. Medline
15. De Simoni A, Griesinger CB, Edwards FA (2003) Development of rat CA1 neurones in acute versus organotypic slices: role of experience in synaptic morphology and activity. J Physiol 550:135-147. CrossRef Medline
16. Gautam SG, Perron A, Mutoh H, Knöpfel T (2009) Exploration of fluorescent protein voltage probes based on circularly permuted fluorescent proteins. Front Neuroeng 2:14. Medline
17. Gong Y, Li JZ, Schnitzer MJ (2013) Enhanced archaerhodopsin fluorescent protein voltage indicators. PLoS One 8:e66959. CrossRef Medline
18. Gong Y, Wagner MJ, Zhong Li J, Schnitzer MJ (2014) Imaging neural spiking in brain tissue using FRET-opsin protein voltage sensors. Nat Commun 5:3674. Medline
19. Govorunova EG, Sineshchekov OA, Li H, Janz R, Spudich JL (2013) Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis. J Biol Chem 288:29911-29922. CrossRef Medline
20. Han Z, Jin L, Platisa J, Cohen LB, Baker BJ, PieriboneVA (2013) Fluorescent protein voltage probes derived from ArcLight that respond to membrane voltage changes with fast kinetics. PLoS One 8:e81295. CrossRef Medline
21. Herculano-Houzel S (2012) The remarkable, yet not extraordinary, human brain as a scaled-up primate brain and its associated cost. Proc Natl Acad Sci U S A 109:10661-10668. CrossRef Medline
22. Hochbaum DR, Zhao Y, Farhi SL, Klapoetke N, Werley CA, Kapoor V, Zou P, Kralj JM, Maclaurin D, Smedemark-Margulies N, Saulnier JL, Boulting GL, Straub C, Cho YK, Melkonian M, Wong GK, Harrison DJ, Murthy VN, Sabatini BL, Boyden ES, et al. (2014) All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins. Nat Methods 11:825- 833. CrossRef Medline
23. 2+-phosphate transfection efficiency in low-density neuronal cultures. Nat Protoc 1:695-700. CrossRef Medline
24. Jin L, HanZ, Platisa J, WooltortonJR, CohenLB, PieriboneVA (2012) Single action potentialsandsubthresholdelectricaleventsimagedinneuronswithafluorescent protein voltage probe. Neuron 75:779-785. CrossRef Medline
25. Katayama H, Yamamoto A, Mizushima N, Yoshimori T, Miyawaki A (2008) GFP-like proteins stably accumulate in lysosomes. Cell Struct Funct 33: 1-12. CrossRef Medline
26. Kirkton RD, Bursac N (2011) Engineering biosynthetic excitable tissues from unexcitable cells for electrophysiological and cell therapy studies. Nat Commun 2:300. CrossRef Medline
27. Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, Surek B, Melkonian M, Jayaraman V, Constantine- Paton M, Wong GK, et al. (2014) Independent optical excitation of distinct neural populations. Nat Methods 11:338 -346. CrossRef Medline
28. Kralj JM, Hochbaum DR, Douglass AD, Cohen AE (2011) Electrical spiking in Escherichia coli probed with a fluorescent voltage-indicating protein. Science 333:345-348. CrossRef Medline
29. Kralj JM, Douglass AD, Hochbaum DR, Maclaurin D, Cohen AE (2012) Optical recording of action potentials in mammalian neurons using a microbial rhodopsin. Nat Methods 9:90 -95. CrossRef Medline
30. Lam AJ, St-Pierre F, Gong Y, Marshall JD, Cranfill PJ, Baird MA, McKeown MR, Wiedenmann J, Davidson MW, Schnitzer MJ, Tsien RY, Lin MZ (2012) Improving FRET dynamic range with bright green and red fluorescent proteins. Nat Methods 9:1005-1012. CrossRef Medline
31. Lewin A, Mayer M, Chusainow J, Jacob D, Appel B (2005) Viral promoters can initiate expression of toxin genes introduced into Escherichia coli. BMC Biotechnol 5:19. CrossRef Medline
32. Li Q, Wanderling S, Paduch M, Medovoy D, Singharoy A, McGreevy R, Villalba- Galea CA, Hulse RE, Roux B, Schulten K, Kossiakoff A, Perozo E (2014) Structural mechanism of voltage-dependent gating in an isolated voltage-sensing domain. Nat Struct Mol Biol 21:244-252. CrossRef Medline
33. Lin JY, Lin MZ, Steinbach P, Tsien RY (2009) Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophys J 96:1803-1814. CrossRef Medline
34. LundbyA, MutohH, DimitrovD, AkemannW, KnöpfelT (2008) Engineering of a genetically encodable fluorescent voltage sensor exploiting fast Ci-VSP voltagesensing movements. PLoS One 3:e2514. CrossRef Medline
35. Mattis J, Tye KM, Ferenczi EA, Ramakrishnan C, O'Shea DJ, Prakash R, Gunaydin LA, Hyun M, Fenno LE, Gradinaru V, Yizhar O, Deisseroth K (2012) Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins. Nat Methods 9:159 -172. Medline
36. McCarthy KD, de Vellis J (1980) Preparation of separate astroglial and oligodendroglial cell cultures from rat cerebral tissue. J Cell Biol 85:890 -902. CrossRef Medline
37. 2+ based on green fluorescent proteins and calmodulin. Nature 388:882- 887. CrossRef Medline
38. Mullinax RL, Wong DT, Davis HA, Padgett KA, Sorge JA (2002) Dualexpression vectors for efficient protein expression in both E. coli and mammalian cells. In: E. coli gene expression protocols (Vaillancourt PE, ed), pp 19-30. New Jersey: Humana.
39. Murata Y, Iwasaki H, Sasaki M, Inaba K, Okamura Y (2005) Phosphoinositide phosphatase activity coupled to an intrinsic voltage sensor. Nature 435:1239 -1243. CrossRef Medline
40. 2+. Proc Natl Acad Sci U S A 98:3197-3202. CrossRef Medline
41. Nakai J, Ohkura M, Imoto K (2001) A high signal-to-noise Ca(2+) probe composed of a single green fluorescent protein. Nat Biotechnol 19: 137-141. CrossRef Medline
42. Panaitescu B, Kuribayashi J, Ruangkittisakul A, Leung V, Iizuka M, BallanyiK (2013) Methylxanthines do not affect rhythmogenic preBötCinspiratory network activity but impair bursting of preBötC-driven motoneurons. Neuroscience 255:158 -176. CrossRef Medline
43. Perron A, Mutoh H, Launey T, Knöpfel T (2009) Red-shifted voltage-sensitive fluorescent proteins. Chem Biol 16:1268-1277. CrossRef Medline
44. Pesaran B, Nelson MJ, Andersen RA (2008) Free choice activates a decision circuit between frontal and parietal cortex. Nature 453:406-409. CrossRef Medline
45. Shu X, Royant A, Lin MZ, Aguilera TA, Lev-Ram V, Steinbach PA, Tsien RY (2009) Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome. Science 324:804-807. CrossRef Medline
46. Siegel MS, Isacoff EY (1997) A genetically encoded optical probe of membrane voltage. Neuron 19:735-741. CrossRef Medline
47. St-Pierre F, Marshall JD, Yang Y, Gong Y, Schnitzer MJ, Lin MZ (2014) High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor. Nat Neurosci 17:884-889. CrossRef Medline
48. Tsien RY (1980) New calcium indicators and buffers with high selectivity against magnesium and protons: design, synthesis, and properties of prototype structures. Biochemistry 19:2396 -2404. CrossRef Medline
49. Wang Q, Shui B, Kotlikoff MI, Sondermann H (2008) Structural basis for calcium sensing by GCaMP2. Structure 16:1817-1827. CrossRef Medline
50. 2+ indicators and photophysical considerations for optogenetic applications. ACS Chem Neurosci 4:963-972. CrossRef Medline
51. 2+ indicator protein for two-photon and ratiometric imaging. Nat Commun 5:5262. CrossRef Medline
52. 2+ indicators. Science 333:1888 -1891. CrossRef Medline
53. Zou P, Zhao Y, Douglass AD, Hochbaum DR, Brinks D, Werley CA, Harrison DJ, Campbell RE, Cohen AE (2014) Bright and fast multicoloured voltage reporters via electrochromic FRET. Nat Commun 5:4625. Medline