-
1
-
-
78751570979
-
RNA sequencing: Advances, challenges and opportunities
-
Ozsolak, F. & Milos, P.M. RNA sequencing: advances, challenges and opportunities. Nat. Rev. Genet. 12, 87-98 (2011
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.M.2
-
2
-
-
67449141880
-
RNA-seq-quantitative measurement of expression through massively parallel RNA-sequencing
-
Wilhelm, B.T. & Landry, J.R. RNA-seq-quantitative measurement of expression through massively parallel RNA-sequencing. Methods 48, 249-257 (2009
-
(2009)
Methods
, vol.48
, pp. 249-257
-
-
Wilhelm, B.T.1
Landry, J.R.2
-
3
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore, M.J. & Proudfoot, N.J. Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 136, 688-700 (2009
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
4
-
-
51349103700
-
Primary microRNA transcripts are processed co-Transcriptionally
-
Morlando, M., et al. Primary microRNA transcripts are processed co-Transcriptionally. Nat. Struct. Mol. Biol. 15, 902-909 (2008
-
(2008)
Nat. Struct. Mol. Biol
, vol.15
, pp. 902-909
-
-
Morlando, M.1
-
5
-
-
47549105524
-
Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production
-
Pawlicki, J.M. & Steitz, J.A. Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production. J. Cell Biol. 182, 61-76 (2008
-
(2008)
J. Cell Biol
, vol.182
, pp. 61-76
-
-
Pawlicki, J.M.1
Steitz, J.A.2
-
6
-
-
84872405841
-
Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription
-
Heidemann, M., Hintermair, C., Voss, K. & Eick, D. Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription. Biochim. Biophys. Acta. 1829, 55-62 (2013
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 55-62
-
-
Heidemann, M.1
Hintermair, C.2
Voss, K.3
Eick, D.4
-
7
-
-
41349094797
-
Transcription regulation through promoter-proximal pausing of RNA polymerase II
-
Core, L.J. & Lis, J.T. Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science 319, 1791-1792 (2008
-
(2008)
Science
, vol.319
, pp. 1791-1792
-
-
Core, L.J.1
Lis, J.T.2
-
8
-
-
84874175008
-
Precise maps of RNA polymerase reveal how promoters direct initiation and pausing
-
Kwak, H., Fuda, N.J., Core, L.J. & Lis, J.T. Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science 339, 950-953 (2013
-
(2013)
Science
, vol.339
, pp. 950-953
-
-
Kwak, H.1
Fuda, N.J.2
Core, L.J.3
Lis, J.T.4
-
9
-
-
84896786505
-
Nucleosomes are context-specific H2A.Z-modulated barriers to RNA polymerase
-
Weber, C.M., Ramachandran, S. & Henikoff, S. Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase. Mol. Cell 53, 819-830 (2014
-
(2014)
Mol. Cell
, vol.53
, pp. 819-830
-
-
Weber, C.M.1
Ramachandran, S.2
Henikoff, S.3
-
10
-
-
84928397692
-
Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution
-
Mayer, A., et al. Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution. Cell 161, 541-554 (2015
-
(2015)
Cell
, vol.161
, pp. 541-554
-
-
Mayer, A.1
-
11
-
-
78751659330
-
Nascent transcript sequencing visualizes transcription at nucleotide resolution
-
Churchman, L.S. & Weissman, J.S. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 469, 368-373 (2011
-
(2011)
Nature
, vol.469
, pp. 368-373
-
-
Churchman, L.S.1
Weissman, J.S.2
-
12
-
-
84901676291
-
A pause sequence enriched at translation start sites drives transcription dynamics in vivo
-
Larson, M.H., et al. A pause sequence enriched at translation start sites drives transcription dynamics in vivo. Science 344, 1042-1047 (2014
-
(2014)
Science
, vol.344
, pp. 1042-1047
-
-
Larson, M.H.1
-
13
-
-
84928386012
-
Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing
-
Nojima, T., et al. Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing. Cell 161, 526-540 (2015
-
(2015)
Cell
, vol.161
, pp. 526-540
-
-
Nojima, T.1
-
14
-
-
0028090567
-
Physical isolation of nascent RNA chains transcribed by RNA polymerase II: Evidence for cotranscriptional splicing
-
Wuarin, J. & Schibler, U. Physical isolation of nascent RNA chains transcribed by RNA polymerase II: evidence for cotranscriptional splicing. Mol. Cell Biol. 14, 7219-7225 (1994
-
(1994)
Mol. Cell Biol
, vol.14
, pp. 7219-7225
-
-
Wuarin, J.1
Schibler, U.2
-
15
-
-
33644856084
-
Exon tethering in transcription by RNA polymerase II.
-
Dye, M.J., Gromak, N. & Proudfoot, N.J. Exon tethering in transcription by RNA polymerase II. Mol. Cell 21, 849-859 (2006
-
(2006)
Mol. Cell
, vol.21
, pp. 849-859
-
-
Dye, M.J.1
Gromak, N.2
Proudfoot, N.J.3
-
16
-
-
40649095272
-
Molecular dissection of mammalian RNA polymerase II transcriptional termination
-
West, S., Proudfoot, N.J. & Dye, M.J. Molecular dissection of mammalian RNA polymerase II transcriptional termination. Mol. Cell 29, 600-610 (2008
-
(2008)
Mol. Cell
, vol.29
, pp. 600-610
-
-
West, S.1
Proudfoot, N.J.2
Dye, M.J.3
-
17
-
-
84876963384
-
Definition of RNA polymerase II CoTC terminator elements in the human genome
-
Nojima, T., Dienstbier, M., Murphy, S., Proudfoot, N.J. & Dye, M.J. Definition of RNA polymerase II CoTC terminator elements in the human genome. Cell Rep. 3, 1080-1092 (2013
-
(2013)
Cell Rep
, vol.3
, pp. 1080-1092
-
-
Nojima, T.1
Dienstbier, M.2
Murphy, S.3
Proudfoot, N.J.4
Dye, M.J.5
-
18
-
-
84872534134
-
And comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses
-
Storvall, H., Ramskold, D. & Sandberg, R. Efficient and comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses. PLoS ONE 8, e53822 (2013
-
(2013)
PLoS ONE
, vol.8
, pp. e53822
-
-
Storvall, H.1
Ramskold, D.2
Efficient, S.R.3
-
19
-
-
84937641334
-
Molecular basis of transcription-coupled pre-mRNA capping
-
Martinez-Rucobo, F.W., et al. Molecular basis of transcription-coupled pre-mRNA capping. Mol. Cell 58, 1079-1089 (2015
-
(2015)
Mol. Cell
, vol.58
, pp. 1079-1089
-
-
Martinez-Rucobo, F.W.1
-
20
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core, L.J., Waterfall, J.J. & Lis, J.T. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322, 1845-1848 (2008
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
21
-
-
79954562232
-
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
-
Min, I.M., et al. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev. 25, 742-754 (2011
-
(2011)
Genes Dev
, vol.25
, pp. 742-754
-
-
Min, I.M.1
-
22
-
-
84877975516
-
Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription
-
Saunders, A., Core, L.J., Sutcliffe, C., Lis, J.T. & Ashe, H.L. Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription. Genes Dev. 27, 1146-1158 (2013
-
(2013)
Genes Dev
, vol.27
, pp. 1146-1158
-
-
Saunders, A.1
Core, L.J.2
Sutcliffe, C.3
Lis, J.T.4
Ashe, H.L.5
-
23
-
-
84879288762
-
Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation
-
Kruesi, W.S., Core, L.J., Waters, C.T., Lis, J.T. & Meyer, B.J. Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation. Elife 2, e00808 (2013
-
(2013)
Elife
, vol.2
, pp. e00808
-
-
Kruesi, W.S.1
Core, L.J.2
Waters, C.T.3
Lis, J.T.4
Meyer, B.J.5
-
24
-
-
84927559450
-
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
-
Core, L.J., et al. Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers. Nat. Genet. 46, 1311-1320 (2014
-
(2014)
Nat. Genet
, vol.46
, pp. 1311-1320
-
-
Core, L.J.1
|