Particulate air pollution exposure and expression of viral and human MicroRNAs in blood: The beijing truck driver air pollution study

Environmental Health Perspectives

Volumn 124, Issue 3, 2016, Pages 344-350

  Hou, Lifang ^a   Barupal, Jitendra ^b,c   Zhang, Wei ^d   Zheng, Yinan ^a   Liu, Lei ^a   Zhang, Xiao ^a   Dou, Chang ^e   McCracken, John P ^b   Díaz, Anaité ^f   Motta, Valeria ^g   Sanchez Guerra, Marco ^b   Wolf, Katherine Rose ^a   Bertazzi, Pier Alberto ^g   Schwartz, Joel D ^b   Wang, Sheng ^h   Baccarelli, Andrea A ^b  

^a NORTHWESTERN UNIVERSITY   (United States)

^b HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^c UNIVERSITY OF RAJASTHAN   (India)

^d UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^e China Institute of Industrial Health   (China)

^f UNIVERSIDAD DEL VALLE DE GUATEMALA   (Guatemala)

^g FONDAZIONE IRCCS CA GRANDA OSPEDALE MAGGIORE POLICLINICO   (Italy)

^h PEKING UNIVERSITY HEALTH SCIENCE CENTER   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; CARBON; CHLORINE; ELEMENTAL CARBON; INSULIN RECEPTOR; MICRORNA; MITOGEN ACTIVATED PROTEIN KINASE P38; NUCLEOTIDE BINDING OLIGOMERIZATION DOMAIN LIKE RECEPTOR; RNA POLYMERASE II; SILICON; TOLL LIKE RECEPTOR; UNCLASSIFIED DRUG; VIRUS RNA; EXHAUST GAS; PARTICULATE MATTER;

3' UNTRANSLATED REGION; ADULT; AIR POLLUTION; ARTICLE; BINDING SITE; BLOOD SAMPLING; BODY MASS; CELL DIFFERENTIATION; CELL PROLIFERATION; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DOWN REGULATION; DRIVER; ENVIRONMENTAL EXPOSURE; FEMALE; GENE EXPRESSION; HUMAN; INTRACELLULAR SIGNALING; MALE; NONHUMAN; PARTICULATE MATTER; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PROMOTER REGION; QUESTIONNAIRE; REAL TIME POLYMERASE CHAIN REACTION; SMOKING; UPREGULATION; WORKER; ADVERSE EFFECTS; BLOOD; CHINA; EXHAUST GAS; LEUKOCYTE; OCCUPATIONAL EXPOSURE; PARTICLE SIZE; TOXICITY;

ADULT; BEIJING; CARBON; ENVIRONMENTAL EXPOSURE; FEMALE; HUMANS; LEUKOCYTES; MALE; MICRORNAS; OCCUPATIONAL EXPOSURE; PARTICLE SIZE; PARTICULATE MATTER; RNA, VIRAL; VEHICLE EMISSIONS;

EID: 84959286870     PISSN: 00916765     EISSN: 15529924     Source Type: Journal    
DOI: 10.1289/ehp.1408519     Document Type: Article

References (43)

1. Baccarelli A, Barretta F, Dou C, Zhang X, McCracken JP, Díaz A, et al. 2011. Effects of particulate air pollution on blood pressure in a highly exposed population in Beijing, China: a repeated-measure study. Environ Health 10:108; doi:10.1186/1476-069X-10-108.
2. Baccarelli A, Bollati V. 2009. Epigenetics and environmental chemicals. Curr Opin Pediatr 21:243-251.
3. Baccarelli AA, Zheng Y, Zhang X, Chang D, Liu L, Wolf KR, et al. 2014. Air pollution exposure and lung function in highly exposed subjects in Beijing, China: a repeated-measure study. Part Fibre Toxicol 11:51; doi:10.1186/s12989-014-0051-7.
4. Barry CT, D'Souza M, McCall M, Safadjou S, Ryan C, Kashyap R, et al. 2012. Micro RNA expression profiles as adjunctive data to assess the risk of hepatocellular carcinoma recurrence after liver transplantation. Am J Transplant 12:428-437.
5. Bellavia A, Urch B, Speck M, Brook RD, Scott JA, Albetti B, et al. 2013. DNA hypomethylation, ambient particulate matter, and increased blood pressure: findings from controlled human exposure experiments. J Am Heart Assoc 2:e000212; doi:10.1161/JAHA.113.000212.
6. Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol 57:289-300.
7. Bollati V, Marinelli B, Apostoli P, Bonzini M, Nordio F, Hoxha M, et al. 2010. Exposure to metal-rich particulate matter modifies the expression of candidate microRNAs in peripheral blood leukocytes. Environ Health Perspect 118:763-768; doi:10.1289/ehp.0901300.
8. Brook RD, Rajagopalan S, Pope CA III, Brook JR, Bhatnagar A, Diez-Roux AV, et al. 2010. Particulate matter air pollution and cardiovascular disease: an update to the scientific statement from the American Heart Association. Circulation 121:2331-2378.
9. Cameron JE, Yin Q, Fewell C, Lacey M, McBride J, Wang X, et al. 2008. Epstein-Barr virus latent membrane protein 1 induces cellular microRNA miR-146a, a modulator of lymphocyte signaling pathways. J Virol 82:1946-1958.
10. Cullen BR. 2006. Viruses and microRNAs. Nat Genet 38(suppl):S25-S30.
11. Dorval V, Mandemakers W, Jolivette F, Coudert L, Mazroui R, De Strooper B, et al. 2014. Gene and microRNA transcriptome analysis of Parkinson's related LRRK2 mouse models. PloS One 9:e85510; doi:10.1371/journal.pone.0085510.
12. Feederle R, Haar J, Bernhardt K, Linnstaedt SD, Bannert H, Lips H, et al. 2011. The members of an Epstein-Barr virus microRNA cluster cooperate to transform B lymphocytes. J Virol 85:9801-9810.
13. Gallaher AM, Das S, Xiao Z, Andresson T, KiefferKwon P, Happel C, et al. 2013. Proteomic screening of human targets of viral microRNAs reveals functions associated with immune evasion and angiogenesis. PLoS Pathog 9:e1003584; doi:10.1371/ journal.ppat.1003584.
14. Gene Ontology Consortium. 2008. The Gene Ontology project in 2008. Nucleic Acids Res 36(database issue):D440-D444.
15. Gowrishankar B, Ibragimova I, Zhou Y, Slifker MJ, Devarajan K, Al-Saleem T, et al. 2014. MicroRNA expression signatures of stage, grade, and progression in clear cell RCC. Cancer Biol Ther 15:329-341.
16. Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. 2008. miRBase: tools for microRNA genomics. Nucleic Acids Res 36(database issue):D154-D158.
17. Grundhoff A, Sullivan CS. 2011. Virus-encoded microRNAs. Virology 411:325-343.
18. Hoogendoorn B, Berube K, Gregory C, Jones T, Sexton K, Brennan P, et al. 2012. Gene and protein responses of human lung tissue explants exposed to ambient particulate matter of different sizes. Inhal Toxicol 24:966-975.
19. Hou L, Zhang X, Zheng Y, Wang S, Dou C, Guo L, et al. 2014. Altered methylation in tandem repeat element and elemental component levels in inhalable air particles. Environ Mol Mutagen 55:256-265.
20. Hsu SD, Lin FM, Wu WY, Liang C, Huang WC, Chan WL, et al. 2011. miRTarBase: a database curates experimentally validated microRNA-target inter actions. Nucleic Acids Res 39(database issue):D163-D169.
21. Hu R, Pan W, Fedulov AV, Jester W, Jones MR, Weiss ST, et al. 2014. MicroRNA-10a controls airway smooth muscle cell proliferation via direct targeting of the PI3 kinase pathway. FASEB J 28:2347-2357.
22. International Organization for Standardization. 1993. ISO 9835, Ambient Air-Determination of a Black Smoke Index. Geneva:ISO. Available: https://www.iso. org/obp/ui/#!iso:std:iso:9835:ed-1:v1:en [accessed 30 May 2015].
23. Jardim MJ, Fry RC, Jaspers I, Dailey L, Diaz-Sanchez D. 2009. Disruption of microRNA expression in human airway cells by diesel exhaust particles is linked to tumorigenesis-associated pathways. Environ Health Perspect 117:1745-1751; doi:10.1289/ehp.0900756.
24. Kanehisa M, Goto S, Kawashima S, Nakaya A. 2002. The KEGG databases at GenomeNet. Nucleic Acids Res 30:42-46.
25. Kincaid RP, Sullivan CS. 2012. Virus-encoded microRNAs: an overview and a look to the future. PLoS Pathog 8:e1003018; doi:10.1371/journal.ppat.1003018.
26. Knutsen E, Fiskaa T, Ursvik A, Jørgensen TE, Perander M, Lund E, et al. 2013. Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines. PloS One 8:e75813; doi:10.1371/journal.pone.0075813.
27. Laumbach RJ, Kipen HM. 2012. Respiratory health effects of air pollution: update on biomass smoke and traffic pollution. J Allergy Clin Immunol 129:3-11.
28. Li S, Zhu J, Zhang W, Chen Y, Zhang K, Popescu LM, et al. 2011. Signature microRNA expression profile of essential hypertension and its novel link to human cytomegalovirus infection. Circulation 124:175-184.
29. Motta V, Angelici L, Nordio F, Bollati V, Fossati S, Frascati F, et al. 2013. Integrative analysis of miRNA and inflammatory gene expression after acute particulate matter exposure. Toxicol Sci 132:307-316.
30. NanoString Technologies. 2013. Targeted miRNA Discovery and Validation-Using the nCounter ® Platform. Seattle, WA: NanoString Technologies Inc. Available: http://www.nanostring.com/media/pdf/ WP_Human_miRNA.pdf [accessed 11 January 2015].
31. Newman ME. 2006. Modularity and community structure in networks. Proc Natl Acad Sci USA 103:8577-8582.
32. Ramalingam D, Kieffer-Kwon P, Ziegelbauer JM. 2012. Emerging themes from EBV and KSHV microRNA targets. Viruses 4:1687-1710.
33. Rich DQ, Kipen HM, Huang W, Wang G, Wang Y, Zhu P, et al. 2012. Association between changes in air pollution levels during the Beijing Olympics and biomarkers of inflammation and thrombosis in healthy young adults. JAMA 307:2068-2078.
34. Sethupathy P, Corda B, Hatzigeorgiou AG. 2006. TarBase: a comprehensive database of experimentally supported animal microRNA targets. RNA 12:192-197.
35. Ufkin ML, Peterson S, Yang X, Driscoll H, Duarte C, Sathyanarayana P. 2014. miR-125a regulates cell cycle, proliferation, and apoptosis by targeting the ErbB pathway in acute myeloid leukemia. Leuk Res 38:402-410.
36. Waggott D, Chu K, Yin S, Wouters BG, Liu FF, Boutros PC. 2012. NanoStringNorm: an extensible R package for the pre-processing of NanoString mRNA and miRNA data. Bioinformatics 28:1546-1548.
37. Wang T, Li GX, Sun J, Buys N, Liu HM, Liu MF, et al. 2013. Association between ambient particulate matter and daily cause-specific mortality in Tanggu, Tianjin Binhai New Area, China. Int J Environ Health Res 23:205-214.
38. Wang Z, Neuburg D, Li C, Su L, Kim JY, Chen JC, et al. 2005. Global gene expression profiling in wholeblood samples from individuals exposed to metal fumes. Environ Health Perspect 113:233-241; doi:10.1289/txg.7273.
39. WHO (World Health Organization). 2014. Ambient (Outdoor) Air Quality and Health. Fact sheet No. 313. Available: http://www.who.int/mediacentre/ factsheets/fs313/en/ [accessed 11 January 2015].
40. Wong CM, Vichit-Vadakan N, Vajanapoom N, Ostro B, Thach TQ, Chau PY, et al. 2010. Part 5. Public health and air pollution in Asia (PAPA): a combined analysis of four studies of air pollution and mortality. Res Rep Health Eff Inst 154:377-418.
41. Wu G, Stein L. 2012. A network module-based method for identifying cancer prognostic signatures. Genome Biol 13:R112; doi:10.1186/gb-2012-13-12-r112.
42. Xiao C, Rajewsky K. 2009. MicroRNA control in the immune system: basic principles. Cell 136:26-36.
43. Yamamoto M, Singh A, Sava F, Pui M, Tebbutt SJ, Carlsten C. 2013. MicroRNA expression in response to controlled exposure to diesel exhaust: attenuation by the antioxidant N-acetylcysteine in a randomized crossover study. Environ Health Perspect 121:670-675; doi:10.1289/ehp.1205963.