-
1
-
-
0004191911
-
Principles of Embryology
-
New York: New York, Macmillan
-
Waddington CH. Principles of Embryology. New York: New York, Macmillan; 1956, p. 528.
-
(1956)
, pp. 528
-
-
Waddington, C.H.1
-
2
-
-
39349096526
-
Hematopoiesis: an evolving paradigm for stem cell biology
-
Orkin SH, Zon LI. Hematopoiesis: an evolving paradigm for stem cell biology. Cell. 2008; 132(4):631-44.
-
(2008)
Cell
, vol.132
, Issue.4
, pp. 631-644
-
-
Orkin, S.H.1
Zon, L.I.2
-
3
-
-
84886994729
-
Neural stem cells: Generating and regenerating the brain
-
Gage FH, Temple S. Neural stem cells: Generating and regenerating the brain. Neuron. 2013; 80(3):588-601.
-
(2013)
Neuron
, vol.80
, Issue.3
, pp. 588-601
-
-
Gage, F.H.1
Temple, S.2
-
4
-
-
0023663888
-
Expression of a single transfected cDNA converts fibroblasts to myoblasts
-
Davis RL, Weintraub H, Lassar AB. Expression of a single transfected cDNA converts fibroblasts to myoblasts. Cell. 1987; 51(6):987-1000.
-
(1987)
Cell
, vol.51
, Issue.6
, pp. 987-1000
-
-
Davis, R.L.1
Weintraub, H.2
Lassar, A.B.3
-
5
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell. 2006; 126(4):663-76.
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
6
-
-
63049090064
-
A fresh look at iPS cells
-
Yamanaka S. A fresh look at iPS cells. Cell. 2009; 137(1):13-7.
-
(2009)
Cell
, vol.137
, Issue.1
, pp. 13-17
-
-
Yamanaka, S.1
-
7
-
-
84865970286
-
Multi-scale modeling of GMP differentiation based on single-cell genealogies
-
Marr C, Strasser M, Schwarzfischer M, Schroeder T, Theis FJ. Multi-scale modeling of GMP differentiation based on single-cell genealogies. FEBS J. 2012; 279(18):3488-500.
-
(2012)
FEBS J
, vol.279
, Issue.18
, pp. 3488-3500
-
-
Marr, C.1
Strasser, M.2
Schwarzfischer, M.3
Schroeder, T.4
Theis, F.J.5
-
8
-
-
33747410158
-
Optimized Neuronal Differentiation of Murine Embryonic Stem Cells: Role of Cell Density
-
Turksen K, editor.
-
Lorincz MT. Optimized Neuronal Differentiation of Murine Embryonic Stem Cells: Role of Cell Density In: Turksen K, editor. Embryonic Stem Cell Protocols. New Jersey: Humana Press: 2006. p. 55-69.
-
(2006)
Embryonic Stem Cell Protocols. New Jersey: Humana Press
, pp. 55-69
-
-
Lorincz, M.T.1
-
9
-
-
39149144034
-
Stem cells and niches: mechanisms that promote stem cell maintenance throughout life
-
Morrison SJ, Spradling AC. Stem cells and niches: mechanisms that promote stem cell maintenance throughout life. Cell. 2008; 132(4):598-611.
-
(2008)
Cell
, vol.132
, Issue.4
, pp. 598-611
-
-
Morrison, S.J.1
Spradling, A.C.2
-
10
-
-
84866443845
-
Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions
-
Scherf N, Herberg M, Thierbach K, Zerjatke T, Kalkan T, Humphreys P, et al.Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions. Bioinformatics. 2012; 28(18):556-61.
-
(2012)
Bioinformatics
, vol.28
, Issue.18
, pp. 556-561
-
-
Scherf, N.1
Herberg, M.2
Thierbach, K.3
Zerjatke, T.4
Kalkan, T.5
Humphreys, P.6
-
11
-
-
84888814610
-
MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis
-
Shivanandan A, Radenovic A, Sbalzarini IF. MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis. BMC Bioinformatics. 2013; 14:349.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 349
-
-
Shivanandan, A.1
Radenovic, A.2
Sbalzarini, I.F.3
-
12
-
-
43749084847
-
Imaging stem-cell-driven regeneration in mammals
-
Schroeder T. Imaging stem-cell-driven regeneration in mammals. Nature. 2008; 453(7193):345-51.
-
(2008)
Nature
, vol.453
, Issue.7193
, pp. 345-351
-
-
Schroeder, T.1
-
13
-
-
84907030448
-
Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
-
Amat F, Lemon W, Mossing D, McDole K. Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data. Nat Methods. 2014; 11(9):951-8.
-
(2014)
Nat Methods
, vol.11
, Issue.9
, pp. 951-958
-
-
Amat, F.1
Lemon, W.2
Mossing, D.3
McDole, K.4
-
14
-
-
0037109565
-
Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
-
Haseltine EL, Rawlings JB. Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics. J Chem Phys. 2002; 117(15):6959.
-
(2002)
J Chem Phys
, vol.117
, Issue.15
, pp. 6959
-
-
Haseltine, E.L.1
Rawlings, J.B.2
-
15
-
-
84949176195
-
Inference for Diffusion Processes: With Applications in Life Sciences
-
Berlin: Springer
-
Fuchs C. Inference for Diffusion Processes: With Applications in Life Sciences. Berlin: Springer; 2013.
-
(2013)
-
-
Fuchs, C.1
-
16
-
-
84884929912
-
An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy
-
Buggenthin F, Marr C, Schwarzfischer M, Hoppe PS, Hilsenbeck O, Schroeder T, et al.An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy. BMC Bioinformatics. 2013; 14(1):297.
-
(2013)
BMC Bioinformatics
, vol.14
, Issue.1
, pp. 297
-
-
Buggenthin, F.1
Marr, C.2
Schwarzfischer, M.3
Hoppe, P.S.4
Hilsenbeck, O.5
Schroeder, T.6
-
17
-
-
67650418221
-
Hematopoietic cytokines can instruct lineage choice
-
Rieger MA, Hoppe PS, Smejkal B, Eitelhuber AC, Schroeder T. Hematopoietic cytokines can instruct lineage choice. Science. 2009; 325:217-8.
-
(2009)
Science
, vol.325
, pp. 217-218
-
-
Rieger, M.A.1
Hoppe, P.S.2
Smejkal, B.3
Eitelhuber, A.C.4
Schroeder, T.5
-
18
-
-
79953268438
-
Continuous live imaging of adult neural stem cell division and lineage progression in vitro
-
Costa MR, Ortega F, Brill MS, Beckervordersandforth R, Petrone C, Schroeder T, et al.Continuous live imaging of adult neural stem cell division and lineage progression in vitro. Development. 2011; 138(6):1057-68.
-
(2011)
Development
, vol.138
, Issue.6
, pp. 1057-1068
-
-
Costa, M.R.1
Ortega, F.2
Brill, M.S.3
Beckervordersandforth, R.4
Petrone, C.5
Schroeder, T.6
-
19
-
-
60149102751
-
Continuous single-cell imaging of blood generation from haemogenic endothelium
-
Eilken HM, Nishikawa SI, Schroeder T. Continuous single-cell imaging of blood generation from haemogenic endothelium. Nature. 2009; 457(7231):896-900.
-
(2009)
Nature
, vol.457
, Issue.7231
, pp. 896-900
-
-
Eilken, H.M.1
Nishikawa, S.I.2
Schroeder, T.3
-
20
-
-
0030778204
-
Effective intercellular communication distances are determined by the relative time constants for cyto/chemokine secretion and diffusion
-
Francis K, Palsson BO. Effective intercellular communication distances are determined by the relative time constants for cyto/chemokine secretion and diffusion. Proc Natl Acad Sci U S A. 1997; 94(23):12258-62.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, Issue.23
, pp. 12258-12262
-
-
Francis, K.1
Palsson, B.O.2
-
21
-
-
0034729493
-
Quorum sensing and the population-dependent control of virulence
-
Williams P, Camara M, Hardman A, Swift S, Milton D, Hope VJ, et al.Quorum sensing and the population-dependent control of virulence. Philos Trans R Soc Lond Series B Biol Sci. 2000; 355(1397):667-80.
-
(2000)
Philos Trans R Soc Lond Series B Biol Sci
, vol.355
, Issue.1397
, pp. 667-680
-
-
Williams, P.1
Camara, M.2
Hardman, A.3
Swift, S.4
Milton, D.5
Hope, V.J.6
-
22
-
-
0003663926
-
Generalized Linear Models
-
London: Chapman and Hall/CRC
-
McCullagh J, Nelder P. Generalized Linear Models. London: Chapman and Hall/CRC; 1989.
-
(1989)
-
-
McCullagh, J.1
Nelder, P.2
-
23
-
-
1642420994
-
A Modified Poisson Regression Approach to Prospective Studies with Binary Data
-
Zou G. A Modified Poisson Regression Approach to Prospective Studies with Binary Data. Am J Epidemiol. 2004; 159(7):702-6.
-
(2004)
Am J Epidemiol
, vol.159
, Issue.7
, pp. 702-706
-
-
Zou, G.1
-
24
-
-
85194972808
-
Regression shrinkage and selection via the lasso
-
Tibshirani R. Regression shrinkage and selection via the lasso. J R Stat Soc Ser B. 1996; 58(1):267-88.
-
(1996)
J R Stat Soc Ser B
, vol.58
, Issue.1
, pp. 267-288
-
-
Tibshirani, R.1
-
25
-
-
84857466151
-
Machine Learning: a Probabilistic Perspective
-
Cambridge, Massachusetts: The MIT Press
-
Murphy KP. Machine Learning: a Probabilistic Perspective. Cambridge, Massachusetts: The MIT Press; 2012.
-
(2012)
-
-
Murphy, K.P.1
-
26
-
-
0003684449
-
The Elements of Statistical Learning
-
New York: Springer;
-
Hastie T, Tibshirani R, Friedman J. The Elements of Statistical Learning. New York: Springer; 2009.
-
(2009)
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
27
-
-
68549133155
-
Learning from Imbalanced Data
-
He H, Garcia E. Learning from Imbalanced Data. IEEE Trans Knowl Data Eng. 2009; 21(9):1263-84.
-
(2009)
IEEE Trans Knowl Data Eng
, vol.21
, Issue.9
, pp. 1263-1284
-
-
He, H.1
Garcia, E.2
-
28
-
-
84863336952
-
Logistic regression applied to natural hazards: rare event logistic regression with replications
-
Guns M, Vanacker V, Glade T. Logistic regression applied to natural hazards: rare event logistic regression with replications. Nat Hazards Earth Syst Sci. 2012; 12:1937-47.
-
(2012)
Nat Hazards Earth Syst Sci
, vol.12
, pp. 1937-1947
-
-
Guns, M.1
Vanacker, V.2
Glade, T.3
-
29
-
-
56449120785
-
Bolasso: model consistent lasso estimation through the bootstrap
-
Madison, Wisconsin: Omnipress
-
Bach F. Bolasso: model consistent lasso estimation through the bootstrap. In: Proceedings of the 25th International Conference on Machine Learning. Madison, Wisconsin: Omnipress: 2008. p. 33-40.
-
(2008)
Proceedings of the 25th International Conference on Machine Learning
, pp. 33-40
-
-
Bach, F.1
-
30
-
-
84901355271
-
A benchmark for comparison of cell tracking algorithms
-
Maska M, Ulman V, Svoboda D, Matula P, Matula P, Ederra C, et al.A benchmark for comparison of cell tracking algorithms. Bioinformatics. 2014; 30(11):1-8.
-
(2014)
Bioinformatics
, vol.30
, Issue.11
, pp. 1-8
-
-
Maska, M.1
Ulman, V.2
Svoboda, D.3
Matula, P.4
Matula, P.5
Ederra, C.6
-
31
-
-
70349466529
-
Population context determines cell-to-cell variability in endocytosis and virus infection
-
Snijder B, Sacher R, Rämö P, Damm EM, Liberali P, Pelkmans L. Population context determines cell-to-cell variability in endocytosis and virus infection. Nature. 2009; 461(7263):520-3.
-
(2009)
Nature
, vol.461
, Issue.7263
, pp. 520-523
-
-
Snijder, B.1
Sacher, R.2
Rämö, P.3
Damm, E.M.4
Liberali, P.5
Pelkmans, L.6
-
32
-
-
83655181439
-
Normalizing for individual cell population context in the analysis of high-content cellular screens
-
Knapp B, Rebhan I, Kumar A, Matula P, Kiani NA, Binder M, et al.Normalizing for individual cell population context in the analysis of high-content cellular screens. BMC Bioinformatics. 2011; 12(1):485.
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.1
, pp. 485
-
-
Knapp, B.1
Rebhan, I.2
Kumar, A.3
Matula, P.4
Kiani, N.A.5
Binder, M.6
-
33
-
-
0035478854
-
Random forests
-
Breiman L. Random forests. Mach Learn. 2001; 45:5-32.
-
(2001)
Mach Learn
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
34
-
-
83455164706
-
Temporal competition between differentiation programs determines cell fate choice
-
Kuchina A, Espinar L, Çagatay T, Balbin AO, Zhang F, Alvarado A, et al.Temporal competition between differentiation programs determines cell fate choice. Mol Syst Biol. 2011; 7(557):1-11.
-
(2011)
Mol Syst Biol.
, vol.7
, Issue.557
, pp. 1-11
-
-
Kuchina, A.1
Espinar, L.2
Çagatay, T.3
Balbin, A.O.4
Zhang, F.5
Alvarado, A.6
-
35
-
-
79955480292
-
Finite Mixtures of Generalized Linear Regression Models
-
Heidelberg, Germany: Physica Verlag
-
Grün B, Leisch F. Finite Mixtures of Generalized Linear Regression Models. In: Recent Advances in Linear Models and Related Areas SE - 11. Heidelberg, Germany: Physica Verlag: 2008. p. 205-30.
-
(2008)
Recent Advances in Linear Models and Related Areas SE - 11.
, pp. 205-230
-
-
Grün, B.1
Leisch, F.2
-
36
-
-
0000336139
-
Regression models and life tables
-
Cox D. Regression models and life tables. JR stat soc B. 1972; 34(2):187-220.
-
(1972)
JR stat soc B
, vol.34
, Issue.2
, pp. 187-220
-
-
Cox, D.1
-
37
-
-
0001646484
-
Cox's Regression Model for Counting Processes:A Large Sample Study
-
Andersen PK, Gill RD. Cox's Regression Model for Counting Processes:A Large Sample Study. Ann Stat. 1982; 10:1100-20.
-
(1982)
Ann Stat
, vol.10
, pp. 1100-1120
-
-
Andersen, P.K.1
Gill, R.D.2
-
38
-
-
0000351727
-
Investigating Causal Relations by Econometric Models and Cross-spectral Methods
-
Granger CWJ. Investigating Causal Relations by Econometric Models and Cross-spectral Methods. Econometrica. 1969; 37(3):424-38.
-
(1969)
Econometrica
, vol.37
, Issue.3
, pp. 424-438
-
-
Granger, C.W.J.1
-
39
-
-
12844266177
-
Sparsity and smoothness via the fused lasso
-
Tibshirani R, Saunders M, Rosset S, Zhu J, Knight K. Sparsity and smoothness via the fused lasso. J R Stat Soc Ser B: Stat Methodol. 2005; 67(1):91-108.
-
(2005)
J R Stat Soc Ser B: Stat Methodol
, vol.67
, Issue.1
, pp. 91-108
-
-
Tibshirani, R.1
Saunders, M.2
Rosset, S.3
Zhu, J.4
Knight, K.5
-
40
-
-
3042841912
-
Delta-Notch signaling and lateral inhibition in zebrafish spinal cord development
-
Appel B, Givan LA, Eisen JS. Delta-Notch signaling and lateral inhibition in zebrafish spinal cord development. BMC Dev Biol. 2001; 1:13.
-
(2001)
BMC Dev Biol
, vol.1
, pp. 13
-
-
Appel, B.1
Givan, L.A.2
Eisen, J.S.3
-
41
-
-
38349157811
-
Hematopoietic cytokines
-
Metcalf D. Hematopoietic cytokines. Blood. 2008; 111(2):485-91.
-
(2008)
Blood
, vol.111
, Issue.2
, pp. 485-491
-
-
Metcalf, D.1
-
42
-
-
34648821257
-
Molecular heterogeneity of breast carcinomas and the cancer stem cell hypothesis
-
Stingl J, Caldas C. Molecular heterogeneity of breast carcinomas and the cancer stem cell hypothesis. Nat Revi Cancer. 2007; 7(10):791-9.
-
(2007)
Nat Revi Cancer
, vol.7
, Issue.10
, pp. 791-799
-
-
Stingl, J.1
Caldas, C.2
-
43
-
-
84881236410
-
Positive Feedback Between PU.1 and the Cell Cycle Controls Myeloid Differentiation
-
Kueh HY, Champhekhar A, Nutt SL, Elowitz MB, Rothenberg EV. Positive Feedback Between PU.1 and the Cell Cycle Controls Myeloid Differentiation. Science. 2013; 341(6146):670-3.
-
(2013)
Science
, vol.341
, Issue.6146
, pp. 670-673
-
-
Kueh, H.Y.1
Champhekhar, A.2
Nutt, S.L.3
Elowitz, M.B.4
Rothenberg, E.V.5
-
44
-
-
80051505603
-
Hierarchical differentiation of Myeloid Progenitors is encoded in the transcription factor network
-
Krumsiek J, Marr C, Schroeder T, Theis FJ. Hierarchical differentiation of Myeloid Progenitors is encoded in the transcription factor network. PLoS ONE. 2011; 6(8):22649.
-
(2011)
PLoS ONE
, vol.6
, Issue.8
, pp. 22649
-
-
Krumsiek, J.1
Marr, C.2
Schroeder, T.3
Theis, F.J.4
-
45
-
-
84855447444
-
Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression
-
Strasser M, Theis FJ, Marr C. Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression. Biophys J. 2012; 102(1):19-29.
-
(2012)
Biophys J
, vol.102
, Issue.1
, pp. 19-29
-
-
Strasser, M.1
Theis, F.J.2
Marr, C.3
-
46
-
-
84895512107
-
Objective comparison of particle tracking methods
-
Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Meijering E. Objective comparison of particle tracking methods. Nat Methods. 2014; 11(3):281-9.
-
(2014)
Nat Methods
, vol.11
, Issue.3
, pp. 281-289
-
-
Chenouard, N.1
Smal, I.2
de Chaumont, F.3
Maška, M.4
Sbalzarini, I.F.5
Meijering, E.6
-
47
-
-
77649263847
-
Computational prediction of neural progenitor cell fates
-
Cohen AR, Gomes FLAF, Roysam B, Cayouette M. Computational prediction of neural progenitor cell fates. Nat Methods. 2010; 7(3):213-8.
-
(2010)
Nat Methods
, vol.7
, Issue.3
, pp. 213-218
-
-
Cohen, A.R.1
Gomes, F.L.A.F.2
Roysam, B.3
Cayouette, M.4
-
48
-
-
37549002155
-
Nanog safeguards pluripotency and mediates germline development
-
Chambers I, Silva J, Colby D, Nichols J, Nijmeijer B, Robertson M, et al.Nanog safeguards pluripotency and mediates germline development. Nature. 2007; 450:1230-4.
-
(2007)
Nature
, vol.450
, pp. 1230-1234
-
-
Chambers, I.1
Silva, J.2
Colby, D.3
Nichols, J.4
Nijmeijer, B.5
Robertson, M.6
-
49
-
-
84898619040
-
A model-based analysis of culture-dependent phenotypes of mESCs
-
Herberg M, Kalkan T, Glauche I, Smith A, Roeder I. A model-based analysis of culture-dependent phenotypes of mESCs. PloS ONE. 2014; 9(3):92496.
-
(2014)
PloS ONE
, vol.9
, Issue.3
, pp. 92496
-
-
Herberg, M.1
Kalkan, T.2
Glauche, I.3
Smith, A.4
Roeder, I.5
-
50
-
-
84944925116
-
FGF/MAPK signaling sets the switching threshold of a bistable circuit controlling cell fate decisions in ES cells
-
Schröter C, Rué P, Mackenzie JP, Martinez Arias A. FGF/MAPK signaling sets the switching threshold of a bistable circuit controlling cell fate decisions in ES cells. bioRxiv. 2015. http://biorxiv.org/content/early/2015/04/21/015404.
-
(2015)
bioRxiv.
-
-
Schröter, C.1
Rué, P.2
Mackenzie, J.P.3
Martinez Arias, A.4
-
51
-
-
80051967505
-
Stochastic state transitions give rise to phenotypic equilibrium in populations of cancer cells
-
Gupta PB, Fillmore CM, Jiang G, Shapira SD, Tao K, Kuperwasser C, Lander ES. Stochastic state transitions give rise to phenotypic equilibrium in populations of cancer cells. Cell. 2011; 146(4):633-44.
-
(2011)
Cell
, vol.146
, Issue.4
, pp. 633-644
-
-
Gupta, P.B.1
Fillmore, C.M.2
Jiang, G.3
Shapira, S.D.4
Tao, K.5
Kuperwasser, C.6
Lander, E.S.7
-
52
-
-
84858608410
-
Cancer stem cells: impact, heterogeneity, and uncertainty
-
Magee JA, Piskounova E, Morrison SJ. Cancer stem cells: impact, heterogeneity, and uncertainty. Cancer Cell. 2012; 21(3):283-96.
-
(2012)
Cancer Cell
, vol.21
, Issue.3
, pp. 283-296
-
-
Magee, J.A.1
Piskounova, E.2
Morrison, S.J.3
|