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Volumn 32, Issue 2, 2016, Pages 179-190

Discrimination of bacteriophage infected cells using locked nucleic acid fluorescent in situ hybridization (LNA-FISH)

Author keywords

Acinetobacter; bacteriophage; biofilms; phage infection, LNA FISH; Pseudomonas aeruginosa

Indexed keywords

BACTERIOPHAGE; BACTERIUM; BIOFILM; BIOFOULING; CELLS AND CELL COMPONENTS; FLUORESCENCE; HYBRIDIZATION; IN SITU MEASUREMENT; INFECTIVITY; NUCLEIC ACID; OPTIMIZATION; POPULATION DYNAMICS; PROBE; SPATIAL DISTRIBUTION;

EID: 84958956424     PISSN: 08927014     EISSN: 10292454     Source Type: Journal    
DOI: 10.1080/08927014.2015.1131821     Document Type: Article
Times cited : (27)

References (49)
  • 2
    • 84881263143 scopus 로고    scopus 로고
    • Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses
    • E.Allers, C.Moraru, M.B.Duhaime, E.Beneze, N.Solonenko, J.Barrero-Canosa, R.Amann, M.B.Sullivan. 2013. Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses. Environ Microbiol. 15:2306–2318. doi 10.1111/emi.2013.15.issue-8
    • (2013) Environ Microbiol , vol.15 , pp. 2306-2318
    • Allers, E.1    Moraru, C.2    Duhaime, M.B.3    Beneze, E.4    Solonenko, N.5    Barrero-Canosa, J.6    Amann, R.7    Sullivan, M.B.8
  • 3
    • 65549111597 scopus 로고    scopus 로고
    • Development and application of a novel peptide nucleic acid probe for the specific detection of Cronobacter genomospecies (Enterobacter sakazakii) in powdered infant formula
    • C.Almeida, N.F.Azevedo, C.Iversen, S.Fanning, C.W.Keevil, M.J.Vieira. 2009. Development and application of a novel peptide nucleic acid probe for the specific detection of Cronobacter genomospecies (Enterobacter sakazakii) in powdered infant formula. Appl Environ Microbiol. 75:2925–2930. doi: 10.1128/AEM.02470-08
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2925-2930
    • Almeida, C.1    Azevedo, N.F.2    Iversen, C.3    Fanning, S.4    Keevil, C.W.5    Vieira, M.J.6
  • 4
    • 77954245728 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization method using a peptide nucleic acid probe for identification of Salmonella spp. in a broad spectrum of samples
    • C.Almeida, N.F.Azevedo, R.M.Fernandes, C.W.Keevil, M.J.Vieira. 2010. Fluorescence in situ hybridization method using a peptide nucleic acid probe for identification of Salmonella spp. in a broad spectrum of samples. Appl Environ Microbiol. 76:4476–4485. doi: 10.1128/AEM.01678-09
    • (2010) Appl Environ Microbiol , vol.76 , pp. 4476-4485
    • Almeida, C.1    Azevedo, N.F.2    Fernandes, R.M.3    Keevil, C.W.4    Vieira, M.J.5
  • 6
    • 80053115614 scopus 로고    scopus 로고
    • Enumeration of bacteriophage particles: comparative analysis of the traditional plaque assay and real-time QPCR- and nanosight-based assays
    • B.Anderson, M.H.Rashid, C.Carter, G.Pasternack, C.Rajanna, T.Revazishvili, T.Dean, A.Senecal, A.Sulakvelidze. 2011. Enumeration of bacteriophage particles: comparative analysis of the traditional plaque assay and real-time QPCR- and nanosight-based assays. Bacteriophage. 1:86–93. doi: 10.4161/bact.1.2.15456
    • (2011) Bacteriophage , vol.1 , pp. 86-93
    • Anderson, B.1    Rashid, M.H.2    Carter, C.3    Pasternack, G.4    Rajanna, C.5    Revazishvili, T.6    Dean, T.7    Senecal, A.8    Sulakvelidze, A.9
  • 7
    • 53249156220 scopus 로고    scopus 로고
    • The Use of phages for the removal of infectious biofilms
    • J.Azeredo, I.W.Sutherland. 2008. The Use of phages for the removal of infectious biofilms. Curr Pharm Biotechnol. 9:261–266. doi: 10.2174/138920108785161604
    • (2008) Curr Pharm Biotechnol , vol.9 , pp. 261-266
    • Azeredo, J.1    Sutherland, I.W.2
  • 8
    • 54349113792 scopus 로고    scopus 로고
    • DNA mimics for the rapid identification of microorganisms by fluorescence in situ hybridization (FISH)
    • L.Cerqueira, N.F.Azevedo, C.Almeida, T.Jardim, C.W.Keevil, M.J.Vieira. 2008. DNA mimics for the rapid identification of microorganisms by fluorescence in situ hybridization (FISH). Int J Mol Sci. 9:1944–1960. doi: 10.3390/ijms9101944
    • (2008) Int J Mol Sci , vol.9 , pp. 1944-1960
    • Cerqueira, L.1    Azevedo, N.F.2    Almeida, C.3    Jardim, T.4    Keevil, C.W.5    Vieira, M.J.6
  • 10
    • 84880401428 scopus 로고    scopus 로고
    • Biofilm formation with mixed cultures of Pseudomonas aeruginosa/Escherichia coli on silicone using artificial urine to mimic urinary catheters
    • L.Cerqueira, J.A.Oliveira, A.Nicolau, N.F.Azevedo, M.J.Vieira. 2013. Biofilm formation with mixed cultures of Pseudomonas aeruginosa/Escherichia coli on silicone using artificial urine to mimic urinary catheters. Biofouling. 29:829–840. doi: 10.1080/08927014.2013.807913
    • (2013) Biofouling , vol.29 , pp. 829-840
    • Cerqueira, L.1    Oliveira, J.A.2    Nicolau, A.3    Azevedo, N.F.4    Vieira, M.J.5
  • 12
    • 0033591467 scopus 로고    scopus 로고
    • Bacterial biofilms: a common cause of persistent infections
    • J.W.Costerton. 1999. Bacterial biofilms: a common cause of persistent infections. Science. 284:1318–1322. doi: 10.1126/science.284.5418.1318
    • (1999) Science , vol.284 , pp. 1318-1322
    • Costerton, J.W.1
  • 13
    • 0028484908 scopus 로고
    • Liquid flow in heterogeneous biofilms
    • D.De Beer, P.Stoodley, Z.Lewandowski. 1994. Liquid flow in heterogeneous biofilms. Biotechnol Bioeng. 44:636–641. doi 10.1002/(ISSN)1097-0290
    • (1994) Biotechnol Bioeng , vol.44 , pp. 636-641
    • De Beer, D.1    Stoodley, P.2    Lewandowski, Z.3
  • 14
    • 0029744081 scopus 로고    scopus 로고
    • Tracing the interaction of bacteriophage with bacterial biofilms using fluorescent and chromogenic probes
    • M.M.Doolittle, J.J.Cooney, D.E.Caldwell. 1996. Tracing the interaction of bacteriophage with bacterial biofilms using fluorescent and chromogenic probes. J Ind Microbiol. 16:331–341. doi: 10.1007/BF01570111
    • (1996) J Ind Microbiol , vol.16 , pp. 331-341
    • Doolittle, M.M.1    Cooney, J.J.2    Caldwell, D.E.3
  • 15
    • 84896723935 scopus 로고    scopus 로고
    • Hybridization-based detection of Helicobacter pylori at human body temperature using advanced locked nucleic acid (LNA) probes
    • S.Fontenete, N.Guimarães, M.Leite, C.Figueiredo, J.Wengel, N.Filipe Azevedo. 2013. Hybridization-based detection of Helicobacter pylori at human body temperature using advanced locked nucleic acid (LNA) probes. PLoS one. 8: e81230. doi: 10.1371/journal.pone.0081230
    • (2013) PLoS one , vol.8 , pp. e81230
    • Fontenete, S.1    Guimarães, N.2    Leite, M.3    Figueiredo, C.4    Wengel, J.5    Filipe Azevedo, N.6
  • 17
    • 84945237183 scopus 로고    scopus 로고
    • Prediction of melting temperatures in fluorescence in situ hybridization (FISH) procedures using thermodynamic models
    • S.Fontenete, N.Guimarães, J.Wengel, N.F.Azevedo. 2015b. Prediction of melting temperatures in fluorescence in situ hybridization (FISH) procedures using thermodynamic models. Crit Rev Biotechnol. 14:1–12. doi: 10.3109/07388551.2014.993589
    • (2015) Crit Rev Biotechnol , vol.14 , pp. 1-12
    • Fontenete, S.1    Guimarães, N.2    Wengel, J.3    Azevedo, N.F.4
  • 18
    • 33750685278 scopus 로고    scopus 로고
    • Signal stability of Cy3 and Cy5 on antibody microarrays
    • Q.Gu, T.M.Sivanandam, C.A.Kim. 2006. Signal stability of Cy3 and Cy5 on antibody microarrays. Proteome Sci. 4:21. doi: 10.1186/1477-5956-4-21
    • (2006) Proteome Sci , vol.4 , pp. 21
    • Gu, Q.1    Sivanandam, T.M.2    Kim, C.A.3
  • 19
    • 0035949626 scopus 로고    scopus 로고
    • A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2
    • E.Hambly, F.Tétart, C.Desplats, W.H.Wilson, H.M.Krisch, N.H.Mann. 2001. A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2. Proc Natl Acad Sci U S A. 98:11411–11416. doi: 10.1073/pnas.191174498
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 11411-11416
    • Hambly, E.1    Tétart, F.2    Desplats, C.3    Wilson, W.H.4    Krisch, H.M.5    Mann, N.H.6
  • 20
    • 0000077049 scopus 로고
    • Sur un microbe invisible antagoniste des bacilles dysentkriques
    • F.d’Herelle. 1917. Sur un microbe invisible antagoniste des bacilles dysentkriques. Acad Sci. 165:373–375.
    • (1917) Acad Sci , vol.165 , pp. 373-375
    • d’Herelle, F.1
  • 21
    • 50049102753 scopus 로고    scopus 로고
    • Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (fish) and catalyzed reporter deposition-fish
    • T.Hoshino, L.S.Yilmaz, D.R.Noguera, H.Daims, M.Wagner. 2008. Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (fish) and catalyzed reporter deposition-fish. Appl Environ Microbiol. 74:5068–5077. doi: 10.1128/AEM.00208-08
    • (2008) Appl Environ Microbiol , vol.74 , pp. 5068-5077
    • Hoshino, T.1    Yilmaz, L.S.2    Noguera, D.R.3    Daims, H.4    Wagner, M.5
  • 22
    • 0032555235 scopus 로고    scopus 로고
    • Variability in the stability of DNA-peptide nucleic acid (PNA) single-base mismatched duplexes: real-time hybridization during affinity electrophoresis in PNA-containing gels
    • G.L.Igloi. 1998. Variability in the stability of DNA-peptide nucleic acid (PNA) single-base mismatched duplexes: real-time hybridization during affinity electrophoresis in PNA-containing gels. Proc Natl Acad Sci USA. 95:8562–8567. doi 10.1073/pnas.95.15.8562
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 8562-8567
    • Igloi, G.L.1
  • 23
    • 0032561794 scopus 로고    scopus 로고
    • LNA (locked nucleic acid): an RNA mimic forming exceedingly stable LNA:LNA duplexes
    • A.A.Koshkin, P.Nielsen, M.Meldgaard, V.K.Rajwanshi, S.K.Singh, J.Wengel. 1998. LNA (locked nucleic acid): an RNA mimic forming exceedingly stable LNA:LNA duplexes. J Am Chem Soc. 120:13252–13253. doi: 10.1021/ja9822862
    • (1998) J Am Chem Soc , vol.120 , pp. 13252-13253
    • Koshkin, A.A.1    Nielsen, P.2    Meldgaard, M.3    Rajwanshi, V.K.4    Singh, S.K.5    Wengel, J.6
  • 24
    • 33747376356 scopus 로고    scopus 로고
    • Improved in situ hybridization efficiency with locked-nucleic-acid-incorporated dna probes
    • K.Kubota, A.Ohashi, H.Imachi, H.Harada. 2006. Improved in situ hybridization efficiency with locked-nucleic-acid-incorporated dna probes. Appl Environ Microbiol. 72:5311–5317. doi: 10.1128/AEM.03039-05
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5311-5317
    • Kubota, K.1    Ohashi, A.2    Imachi, H.3    Harada, H.4
  • 26
    • 33846102841 scopus 로고    scopus 로고
    • ProbeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007
    • A.Loy, F.Maixner, M.Wagner, M.Horn. 2007. ProbeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Res. 35:D800–D804. doi: 10.1093/nar/gkl856
    • (2007) Nucleic Acids Res , vol.35 , pp. D800-D804
    • Loy, A.1    Maixner, F.2    Wagner, M.3    Horn, M.4
  • 27
    • 51649116822 scopus 로고    scopus 로고
    • ProbeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity
    • A.Loy, R.Arnold, P.Tischler, T.Rattei, M.Wagner, M.Horn. 2008. ProbeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity. Environ Microbiol. 10:2894–2898. doi: 10.1111/j.1462-2920.2008.01706.x
    • (2008) Environ Microbiol , vol.10 , pp. 2894-2898
    • Loy, A.1    Arnold, R.2    Tischler, P.3    Rattei, T.4    Wagner, M.5    Horn, M.6
  • 28
    • 84865089127 scopus 로고    scopus 로고
    • Genome, integration, and transduction of a novel temperate phage of Helicobacter pylori
    • C.-H.Luo, P.-Y.Chiou, C.-Y.Yang, N.-T.Lin. 2012. Genome, integration, and transduction of a novel temperate phage of Helicobacter pylori. J Virol. 86:8781–8792. doi: 10.1128/JVI.00446-12
    • (2012) J Virol , vol.86 , pp. 8781-8792
    • Luo, C.-H.1    Chiou, P.-Y.2    Yang, C.-Y.3    Lin, N.-T.4
  • 29
    • 77953658770 scopus 로고    scopus 로고
    • Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes
    • P.Mahadevan, J.F.King, D.Seto. 2009. Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes. Int J Comput Biol Drug Des. 2:100–114. doi: 10.1504/IJCBDD.2009.027586
    • (2009) Int J Comput Biol Drug Des , vol.2 , pp. 100-114
    • Mahadevan, P.1    King, J.F.2    Seto, D.3
  • 30
    • 62449098858 scopus 로고    scopus 로고
    • Enumeration of bacteriophages using the small drop plaque assay system
    • A.Mazzocco, T.E.Waddell, E.Lingohr, R.P.Johnson. 2009. Enumeration of bacteriophages using the small drop plaque assay system. Methods Mol Biol. 501:81–85. doi: 10.1007/978-1-60327-164-6
    • (2009) Methods Mol Biol , vol.501 , pp. 81-85
    • Mazzocco, A.1    Waddell, T.E.2    Lingohr, E.3    Johnson, R.P.4
  • 31
    • 2442496406 scopus 로고    scopus 로고
    • Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation
    • P.M.McTigue, R.J.Peterson, J.D.Kahn. 2004. Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation. Biochemistry. 43:5388–5405. doi: 10.1021/bi035976d
    • (2004) Biochemistry , vol.43 , pp. 5388-5405
    • McTigue, P.M.1    Peterson, R.J.2    Kahn, J.D.3
  • 35
    • 0033624448 scopus 로고    scopus 로고
    • Bacteriophage φYeO3-12, specific for Yersinia enterocolitica serotype O:3, is related to coliphages T3 and T7
    • M.Pajunen, S.Kiljunen, M.Skurnik. 2000. Bacteriophage φYeO3-12, specific for Yersinia enterocolitica serotype O:3, is related to coliphages T3 and T7. J Bacteriol. 182:5114–5120.doi: 10.1128/JB.182.18.5114-5120.2000
    • (2000) J Bacteriol , vol.182 , pp. 5114-5120
    • Pajunen, M.1    Kiljunen, S.2    Skurnik, M.3
  • 36
    • 84976213689 scopus 로고    scopus 로고
    • Methods for rapid virus identification and quantification
    • K.Pankaj. 2013. Methods for rapid virus identification and quantification. Mater Methods. 3:207.
    • (2013) Mater Methods , vol.3 , pp. 207
    • Pankaj, K.1
  • 37
    • 80053385532 scopus 로고    scopus 로고
    • Use of newly isolated phages for control of Pseudomonas aeruginosa PAO1 and ATCC 10145 biofilms
    • D.Pires, S.Sillankorva, A.Faustino, J.Azeredo. 2011. Use of newly isolated phages for control of Pseudomonas aeruginosa PAO1 and ATCC 10145 biofilms. Res Microbiol. 162:798–806. doi: 10.1016/j.resmic.2011.06.010
    • (2011) Res Microbiol , vol.162 , pp. 798-806
    • Pires, D.1    Sillankorva, S.2    Faustino, A.3    Azeredo, J.4
  • 38
    • 84861333914 scopus 로고    scopus 로고
    • LNA probes substantially improve the detection of bacterial endosymbionts in whole mount of insects by fluorescent in-situ hybridization
    • N.G.Priya, N.Pandey, R.Rajagopal. 2012. LNA probes substantially improve the detection of bacterial endosymbionts in whole mount of insects by fluorescent in-situ hybridization. BMC Microbiol. 12:81. doi: 10.1186/1471-2180-12-81
    • (2012) BMC Microbiol , vol.12 , pp. 81
    • Priya, N.G.1    Pandey, N.2    Rajagopal, R.3
  • 39
    • 84891085220 scopus 로고    scopus 로고
    • Specific discrimination of three pathogenic Salmonella enterica subsp. enterica serotypes by carB-based oligonucleotide microarray
    • H.H.Shin, B.H.Hwang, J.H.Seo, H.J.Cha. 2014. Specific discrimination of three pathogenic Salmonella enterica subsp. enterica serotypes by carB-based oligonucleotide microarray. Appl Environ Microbiol. 80:366–373. doi: 10.1128/AEM.02978-13
    • (2014) Appl Environ Microbiol , vol.80 , pp. 366-373
    • Shin, H.H.1    Hwang, B.H.2    Seo, J.H.3    Cha, H.J.4
  • 40
    • 56049096626 scopus 로고    scopus 로고
    • Pseudomonas fluorescens biofilms subjected to phage phiIBB-PF7A
    • S.Sillankorva, P.Neubauer, J.Azeredo. 2008. Pseudomonas fluorescens biofilms subjected to phage phiIBB-PF7A. BMC Biotechnol. 8:79. doi: 10.1186/1472-6750-8-79
    • (2008) BMC Biotechnol , vol.8 , pp. 79
    • Sillankorva, S.1    Neubauer, P.2    Azeredo, J.3
  • 42
    • 80051733474 scopus 로고    scopus 로고
    • A sensitive alternative for microrna in situ hybridizations using probes of 2'-O-methyl RNA + LNA
    • M.J.Søe, T.Møller, M.Dufva, K.Holmstrøm. 2011. A sensitive alternative for microrna in situ hybridizations using probes of 2'-O-methyl RNA + LNA. J Histochem Cytochem. 59:661–672. doi: 10.1369/0022155411409411
    • (2011) J Histochem Cytochem , vol.59 , pp. 661-672
    • Søe, M.J.1    Møller, T.2    Dufva, M.3    Holmstrøm, K.4
  • 44
    • 0025325984 scopus 로고
    • Interpretation of the correlation coefficient: a basic review
    • R.Taylor. 1990. Interpretation of the correlation coefficient: a basic review. J Diagnostic Med Sonogr. 6:35–39. doi: 10.1177/875647939000600106
    • (1990) J Diagnostic Med Sonogr , vol.6 , pp. 35-39
    • Taylor, R.1
  • 45
    • 27144525471 scopus 로고    scopus 로고
    • Dramatically improved RNA in situ hybridization signals using LNA-modified probes
    • R.Thomsen, P.S.Nielsen, T.H.Jensen. 2005. Dramatically improved RNA in situ hybridization signals using LNA-modified probes. RNA. 11:1745–1748. doi: 10.1261/rna.2139705
    • (2005) RNA , vol.11 , pp. 1745-1748
    • Thomsen, R.1    Nielsen, P.S.2    Jensen, T.H.3
  • 47
    • 4944237752 scopus 로고    scopus 로고
    • Conserved translational frameshift in dsDNA bacteriophage tail assembly genes
    • J.Xu, R.W.Hendrix, R.L.Duda. 2004. Conserved translational frameshift in dsDNA bacteriophage tail assembly genes. Mol Cell. 16:11–21. doi: 10.1016/j.molcel.2004.09.006
    • (2004) Mol Cell , vol.16 , pp. 11-21
    • Xu, J.1    Hendrix, R.W.2    Duda, R.L.3
  • 48
    • 10644234817 scopus 로고    scopus 로고
    • Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization
    • L.S.Yilmaz, D.R.Noguera. 2004. Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization. Appl Environ Microbiol. 70:7126–7139. doi: 10.1128/AEM.70.12.7126-7139.2004
    • (2004) Appl Environ Microbiol , vol.70 , pp. 7126-7139
    • Yilmaz, L.S.1    Noguera, D.R.2


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