Methylation markers for the identification of body fluids and tissues from forensic trace evidence

PLoS ONE

Volumn 11, Issue 2, 2016, Pages

  Forat, Sophia ^a   Huettel, Bruno ^b   Reinhardt, Richard ^b   Fimmers, Rolf ^c   Haidl, Gerhard ^c   Denschlag, Dominik ^d   Olek, Klaus ^a  

^a Labor für Abstammungsbegutachtungen   (Germany)

^b MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^c UNIVERSITY OF BONN   (Germany)

^d Department of OB/GYN Hochtaunuskliniken Bad Homburg ^*  (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BODY FLUID; CLINICAL ARTICLE; CPG ISLAND; DNA MARKER; DNA METHYLATION; DNA METHYLATION ASSAY; EPIGENETICS; FEMALE; FORENSIC GENETICS; FORENSIC IDENTIFICATION; GENE LOCUS; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; INTERMETHOD COMPARISON; MALE; MENSTRUAL BLOOD; SALIVA; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SPERM; UTERINE CERVIX CARCINOMA; VAGINAL SECRETION; VALIDATION STUDY; VENOUS BLOOD; ANTIBODY SPECIFICITY; COMPUTER SIMULATION; DISCRIMINANT ANALYSIS; GENETICS; HUMAN GENOME; METABOLISM; REPRODUCIBILITY;

BIOLOGICAL MARKER;

BIOMARKERS; BODY FLUIDS; COMPUTER SIMULATION; DISCRIMINANT ANALYSIS; DNA METHYLATION; FEMALE; FORENSIC GENETICS; GENETIC LOCI; GENOME, HUMAN; HUMANS; MALE; ORGAN SPECIFICITY; POLYMORPHISM, SINGLE NUCLEOTIDE; REPRODUCIBILITY OF RESULTS;

EID: 84958811549     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0147973     Document Type: Article

References (31)

1. Santucci KA, Nelson DG, McQuillen KK, Duffy SJ, Linakis JG. Wood's lamp utility in the identification of semen. Pediatrics. 1999 Dec; 104(6):1342-4. PMID: 10585986
2. James SH, Nordby JJ. Identification of biological fluids and stains; Forensic science: an introduction to scientific and investigative techniques. 2nd ed. Boca Raton: CRC Press, USA; 2003.
3. Allen SM. An enzyme linked immunosorbent assay (ELISA) for detection of seminal fluid using a monoclonal antibody to prostatic acid phosphatase. J Immunoassay. 1995 Aug; 16(3):297-308. PMID: 7593651
4. Sato I, Barni F, Yoshiike M, Rapone C, Berti A, Nakaki S, et al. Applicability of Nanotrap Sg as a semen detection kit before male-specific DNA profiling in sexual assaults. Int J Legal Med. 2007 Jul; 121 (4):315-9. PMID: 16583248
5. Haas C, Klesser B, Kratzer A, Bär W. mRNA profiling for body fluid identification. Forensic Sci Int Genet. 2009 Mar; 3(2):80-8. doi: 10.1016/j.fsigen.2008.11.003 PMID: 19215876
6. Juusola J, Ballantyne J. mRNA profiling for body fluid identification by multiplex quantitative RT-PCR. J Forensic Sci. 2007 Nov; 52(6):1252-62. PMID: 17868268
7. Hanson EK, Lubenow H, Ballantyne J. Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs. Anal Biochem. 2009 Apr 15; 387(2):303-14. doi: 10.1016/j.ab. 2009.01.037 PMID: 19454234
8. Zubakov D, Boersma AW, Choi Y, van Kuijk PF, Wiemer EA, Kayser M. MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation. Int J Legal Med. 2010 May; 124(3):217-26. doi: 10.1007/s00414-009-0402-3 PMID: 20145944
9. Lee HY, Park MJ, Choi A, An JH, Yang WI, Shin KJ. Potential forensic application of DNA methylation profiling to body fluid identification. Int J Legal Med. 2012 Jan; 126(1):55-62. doi: 10.1007/s00414-011-0569-2 PMID: 21626087
10. Frumkin D, Wasserstrom A, Budowle B, Davidson A. DNA methylation-based forensic tissue identification. Forensic Sci Int Genet. 2011 Nov; 5(5):517-24. doi: 10.1016/j.fsigen.2010.12.001 PMID: 21196138
11. Lee HY, An JH, Jung SE, Oh YN, Lee EY, Choi A, et al. Genome-wide methylation profiling and a multiplex construction for the identification of body fluids using epigenetic markers. Forensic Sci Int Genet. 2015 Jul; 17:17-24. doi: 10.1016/j.fsigen.2015.03.002 PMID: 25796047
12. Baron U, Türbachova I, Hellwag A, Eckhardt F, Berlin K, Hoffmuller U, et al. DNA methylation analysis as a tool for cell typing. Epigenetics. 2006 Jan-Mar; 1(1):55-60. PMID: 17998806
13. Fraga MF, Ballestar E, Paz MF, Ropero S, Setien F, Ballestar ML, et al. Epigenetic differences arise during the lifetime of monozygotic twins. Proc Natl Acad Sci U S A. 2005 Jul 26; 102(30):10604-9. PMID: 16009939
14. Christensen BC, Houseman EA, Marsit CJ, Zheng S, Wrensch MR, Wiemels JL, et al. Aging and Environmental Exposures Alter Tissue-Specific DNA Methylation Dependent upon CpG Island Context. PLoS Genet. 2009 Aug; 5(8):e1000602. doi: 10.1371/journal.pgen.1000602 PMID: 19680444
15. Zhang D, Cheng L, Badner JA, Chen C, Chen Q, Luo W, et al. Genetic Control of Individual Differences in Gene-Specific Methylation in Human Brain. Am J Hum Genet. 2010 Mar 12; 86(3):411-9. doi: 10. 1016/j.ajhg.2010.02.005 PMID: 20215007
16. Deng J, Shoemaker R, Xie B, Gore A, LeProust EM, Antosiewicz-Bourget J, et al. Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming. Nat Biotechnol. 2009 Apr; 27(4):353-60. doi: 10.1038/nbt.1530 PMID: 19330000
17. Shoemaker R, Deng J, Wang W, Zhang K. Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. Genome Res. 2010 Jul; 20(7):883-9. doi: 10.1101/gr.104695.109 PMID: 20418490
18. Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, et al. DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biol. 2011; 12(1): R10. doi: 10.1186/gb-2011-12-1-r10 PMID: 21251332
19. Setzer M, Juusola J, Ballantyne J. Recovery and Stability of RNA in Vaginal Swabs and Bloob, Semen, and Saliva Stains. J Forensic Sci. 2008 Mar; 53(2):296-305. doi: 10.1111/j.1556-4029.2007.00652.x PMID: 18298493
20. Lewin J, Schmitt AO, Adorján P, Hildmann T, Piepenbrock C. Quantitative DNA methylation analysis based on four-dye trace data from direct sequencing of PCR amplificates. Bioinformatics. 2004 Nov 22; 20(17):3005-12. PMID: 15247106
21. Fiegl H & Elmasry K. Cancer diagnosis, risk assessment and prediction of therapeutic response by means of DNA methylation markers. Dis Markers. 2007; 23(1-2):89-96. PMID: 17325428
22. Esteller M & Herman JG. Cancer as an epigenetic disease: DNA methylation and chromatin alterations in human tumours. J Pathol. 2002 Jan; 196(1):1-7. PMID: 11748635
23. Barfield RT, Almli LM, Kilaru V, Smith AK, Mercer KB, Duncan R, et al. Accounting for population stratification in DNA methylation studies. Genet Epidemiol. 2014 Apr; 38(3):231-41. doi: 10.1002/gepi.21789 PMID: 24478250
24. Huang Y, Pastor WA, Shen Y, Tahiliani M, Liu DR, Rao A. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing. PLoS One. 2010 Jan 26; 5(1):e8888. doi: 10.1371/journal.pone.0008888 PMID: 20126651
25. Haas C, Hanson E, Bär W, Banemann R, Bento AM, Berti A, et al. mRNA profiling for the identification of blood - results of a collaborative EDNAP exercise. Forensic Sci Int Genet. 2011 Jan; 5(1):21-6. doi: 10.1016/j.fsigen.2010.01.003 PMID: 20457073
26. Haas C, Hanson E, Anjos MJ, Bär W, Banemann R, Berti A, et al. RNA/DNA co-analysis from blood stains - results of a second collaborative EDNAP exercise. Forensic Sci Int Genet. 2012 Jan; 6(1):70-80. doi: 10.1016/j.fsigen.2011.02.004 PMID: 21459062
27. Haas C, Hanson E, Anjos MJ, Banemann R, Berti A, Borges E, et al. RNA/DNA co-analysis from human saliva and semen stains - results of a third collaborative EDNAP exercise. Forensic Sci Int Genet. 2013 Feb; 7(2):230-9. doi: 10.1016/j.fsigen.2012.10.011 PMID: 23165093
28. Haas C, Hanson E, Anjos MJ, Ballantyne KN, Banemann R, Bhoelai B, et al. RNA/DNA co-analysis from human menstrual blood and vaginal secretion stains: results of a fourth and fifth collaborative EDNAP exercise. Forensic Sci Int Genet. 2014 Jan; 8(1):203-12. doi: 10.1016/j.fsigen.2013.09.009 PMID: 24315610
29. van den Berge M, Carracedo A, Gomes I, Graham EA, Haas C, Hjort B et al. A collaborative European exercise on mRNA-based body fluid/skin typing and interpretation of DNA and RNA results. Forensic Sci Int Genet. 2014 May; 10:40-8. doi: 10.1016/j.fsigen.2014.01.006 PMID: 24552886
30. LaRue BL, King JL, Budowle B. A validation study of the Nucleix DSI-Semen kit - a methylation-based assay for semen identification. Int J Legal Med. 2013 Mar; 127(2):299-308. doi: 10.1007/s00414-012-0760-0 PMID: 22895803
31. An JH, Choi A, Shin KJ, Yang WI, Lee HY. DNA methylation-specific multiplex assays for body fluid identification. Int J Legal Med. 2013 Jan; 127(1):35-43. doi: 10.1007/s00414-012-0719-1 PMID: 22653424