메뉴 건너뛰기




Volumn 15, Issue 2, 2016, Pages 638-646

Targeted Proteomics Approach for Precision Plant Breeding

Author keywords

breeding; marker assisted selection; MAS; PASS00692; potato; proteomics; secretome; selected reaction monitoring; Solanum tuberosum; SRM

Indexed keywords

ANALYTIC METHOD; ARTICLE; CONTROLLED STUDY; DNA MARKER; NONHUMAN; PHYTOPHTHORA INFESTANS; PLANT BREEDING; PLANT DEVELOPMENT; PLANT LEAF; PLANT YIELD; POTATO; PRIORITY JOURNAL; PROTEOMICS; SELECTED REACTION MONITORING; DISEASE RESISTANCE; GENETICS; HOST PATHOGEN INTERACTION; MASS SPECTROMETRY; METABOLISM; MICROBIOLOGY; MULTIVARIATE ANALYSIS; PHYSIOLOGY; PLANT DISEASE; PLANT TUBER; PROCEDURES;

EID: 84957677420     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/acs.jproteome.5b01061     Document Type: Article
Times cited : (41)

References (36)
  • 1
    • 77954523086 scopus 로고    scopus 로고
    • Options and considerations when selecting a quantitative proteomics strategy
    • Domon, B.; Aebersold, R. Options and considerations when selecting a quantitative proteomics strategy Nat. Biotechnol. 2010, 28 (7) 710-21 10.1038/nbt.1661
    • (2010) Nat. Biotechnol. , vol.28 , Issue.7 , pp. 710-721
    • Domon, B.1    Aebersold, R.2
  • 3
    • 68749094119 scopus 로고    scopus 로고
    • Full dynamic range proteome analysis of S. Cerevisiae by targeted proteomics
    • Picotti, P.; Bodenmiller, B.; Mueller, L. N.; Domon, B.; Aebersold, R. Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics Cell 2009, 138 (4) 795-806 10.1016/j.cell.2009.05.051
    • (2009) Cell , vol.138 , Issue.4 , pp. 795-806
    • Picotti, P.1    Bodenmiller, B.2    Mueller, L.N.3    Domon, B.4    Aebersold, R.5
  • 7
    • 0032055012 scopus 로고    scopus 로고
    • Efficiency of multistage marker-assisted selection in the improvement of multiple quantitative traits
    • Xie, C.; Xu, S. Efficiency of multistage marker-assisted selection in the improvement of multiple quantitative traits Heredity 1998, 80 (Pt 4) 489-498 10.1046/j.1365-2540.1998.00308.x
    • (1998) Heredity , vol.80 , pp. 489-498
    • Xie, C.1    Xu, S.2
  • 8
    • 84859911467 scopus 로고    scopus 로고
    • Lessons from eQTL mapping studies: Non-coding regions and their role behind natural phenotypic variation in plants
    • Cubillos, F. A.; Coustham, V.; Loudet, O. Lessons from eQTL mapping studies: non-coding regions and their role behind natural phenotypic variation in plants Curr. Opin. Plant Biol. 2012, 15 (2) 192-8 10.1016/j.pbi.2012.01.005
    • (2012) Curr. Opin. Plant Biol. , vol.15 , Issue.2 , pp. 192-198
    • Cubillos, F.A.1    Coustham, V.2    Loudet, O.3
  • 9
    • 0035987406 scopus 로고    scopus 로고
    • Proteomic analysis of amphiphilic proteins of hexaploid wheat kernels
    • Amiour, N.; Merlino, M.; Leroy, P.; Branlard, G. Proteomic analysis of amphiphilic proteins of hexaploid wheat kernels Proteomics 2002, 2 (6) 632-41 10.1002/1615-9861(200206)2:6<632::AID-PROT632>3.0.CO;2-M
    • (2002) Proteomics , vol.2 , Issue.6 , pp. 632-641
    • Amiour, N.1    Merlino, M.2    Leroy, P.3    Branlard, G.4
  • 10
    • 0347300261 scopus 로고    scopus 로고
    • Chromosome mapping and identification of amphiphilic proteins of hexaploid wheat kernels
    • Amiour, N.; Merlino, M.; Leroy, P.; Branlard, G. Chromosome mapping and identification of amphiphilic proteins of hexaploid wheat kernels Theor. Appl. Genet. 2003, 108 (1) 62-72 10.1007/s00122-003-1411-0
    • (2003) Theor. Appl. Genet. , vol.108 , Issue.1 , pp. 62-72
    • Amiour, N.1    Merlino, M.2    Leroy, P.3    Branlard, G.4
  • 11
    • 67349194053 scopus 로고    scopus 로고
    • Mapping and proteomic analysis of albumin and globulin proteins in hexaploid wheat kernels (Triticum aestivum L.)
    • Merlino, M.; Leroy, P.; Chambon, C.; Branlard, G. Mapping and proteomic analysis of albumin and globulin proteins in hexaploid wheat kernels (Triticum aestivum L.) Theor. Appl. Genet. 2009, 118 (7) 1321-1337 10.1007/s00122-009-0983-8
    • (2009) Theor. Appl. Genet. , vol.118 , Issue.7 , pp. 1321-1337
    • Merlino, M.1    Leroy, P.2    Chambon, C.3    Branlard, G.4
  • 12
    • 0028285005 scopus 로고
    • Quantitative trait loci underlying gene product variation: A novel perspective for analyzing regulation of genome expression
    • Damerval, C.; Maurice, A.; Josse, J. M.; de Vienne, D. Quantitative trait loci underlying gene product variation: a novel perspective for analyzing regulation of genome expression Genetics 1994, 137 (1) 289-301
    • (1994) Genetics , vol.137 , Issue.1 , pp. 289-301
    • Damerval, C.1    Maurice, A.2    Josse, J.M.3    De Vienne, D.4
  • 13
    • 0033818171 scopus 로고    scopus 로고
    • Signal peptide-dependent protein transport in Bacillus subtilis: A genome-based survey of the secretome
    • Tjalsma, H.; Bolhuis, A.; Jongbloed, J. D.; Bron, S.; van Dijl, J. M. Signal peptide-dependent protein transport in Bacillus subtilis: a genome-based survey of the secretome Microbiol Mol. Biol. Rev. 2000, 64 (3) 515-47 10.1128/MMBR.64.3.515-547.2000
    • (2000) Microbiol Mol. Biol. Rev. , vol.64 , Issue.3 , pp. 515-547
    • Tjalsma, H.1    Bolhuis, A.2    Jongbloed, J.D.3    Bron, S.4    Van Dijl, J.M.5
  • 15
    • 33751100626 scopus 로고    scopus 로고
    • The plant immune system
    • Jones, J. D.; Dangl, J. L. The plant immune system Nature 2006, 444 (7117) 323-9 10.1038/nature05286
    • (2006) Nature , vol.444 , Issue.7117 , pp. 323-329
    • Jones, J.D.1    Dangl, J.L.2
  • 16
    • 71149108056 scopus 로고    scopus 로고
    • Correlation of mRNA and protein in complex biological samples
    • Maier, T.; Guell, M.; Serrano, L. Correlation of mRNA and protein in complex biological samples FEBS Lett. 2009, 583 (24) 3966-73 10.1016/j.febslet.2009.10.036
    • (2009) FEBS Lett. , vol.583 , Issue.24 , pp. 3966-3973
    • Maier, T.1    Guell, M.2    Serrano, L.3
  • 17
    • 70349253925 scopus 로고    scopus 로고
    • Applied Biotechnology to Combat Late Blight in Potato Caused by Phytophthora Infestans
    • Haverkort, A. J.; Struik, P. C.; Visser, R. G. F.; Jacobsen, E. Applied Biotechnology to Combat Late Blight in Potato Caused by Phytophthora Infestans Potato Res. 2009, 52 (3) 249-264 10.1007/s11540-009-9136-3
    • (2009) Potato Res. , vol.52 , Issue.3 , pp. 249-264
    • Haverkort, A.J.1    Struik, P.C.2    Visser, R.G.F.3    Jacobsen, E.4
  • 20
    • 84902717183 scopus 로고    scopus 로고
    • Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions
    • Ali, A.; Alexandersson, E.; Sandin, M.; Resjö, S.; Lenman, M.; Hedley, P.; Levander, F.; Andreasson, E. Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions BMC Genomics 2014, 15 (1) 497 10.1186/1471-2164-15-497
    • (2014) BMC Genomics , vol.15 , Issue.1 , pp. 497
    • Ali, A.1    Alexandersson, E.2    Sandin, M.3    Resjö, S.4    Lenman, M.5    Hedley, P.6    Levander, F.7    Andreasson, E.8
  • 21
    • 84969402817 scopus 로고    scopus 로고
    • The Isolation of Plant Organelles and Structures: Isolation of apoplast. (In Press)
    • Andreasson, E.; Abreha, K. B.; Resjö, S. The Isolation of Plant Organelles and Structures: Isolation of apoplast. (In Press). Methods Mol. Biol. 2016.
    • (2016) Methods Mol. Biol.
    • Andreasson, E.1    Abreha, K.B.2    Resjö, S.3
  • 23
    • 67049100049 scopus 로고    scopus 로고
    • The proteios software environment: An extensible multiuser platform for management and analysis of proteomics data
    • Häkkinen, J.; Vincic, G.; Månsson, O.; Wårell, K.; Levander, F. The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data J. Proteome Res. 2009, 8 (6) 3037-43 10.1021/pr900189c
    • (2009) J. Proteome Res. , vol.8 , Issue.6 , pp. 3037-3043
    • Häkkinen, J.1    Vincic, G.2    Månsson, O.3    Wårell, K.4    Levander, F.5
  • 25
    • 84902095881 scopus 로고    scopus 로고
    • Normalyzer: A tool for rapid evaluation of normalization methods for omics data sets
    • Chawade, A.; Alexandersson, E.; Levander, F. Normalyzer: a tool for rapid evaluation of normalization methods for omics data sets J. Proteome Res. 2014, 13 (6) 3114-20 10.1021/pr401264n
    • (2014) J. Proteome Res. , vol.13 , Issue.6 , pp. 3114-3120
    • Chawade, A.1    Alexandersson, E.2    Levander, F.3
  • 27
    • 84922599807 scopus 로고    scopus 로고
    • Data processing has major impact on the outcome of quantitative label-free LC-MS analysis
    • Chawade, A.; Sandin, M.; Teleman, J.; Malmstrom, J.; Levander, F. Data processing has major impact on the outcome of quantitative label-free LC-MS analysis J. Proteome Res. 2015, 14 (2) 676-87 10.1021/pr500665j
    • (2015) J. Proteome Res. , vol.14 , Issue.2 , pp. 676-687
    • Chawade, A.1    Sandin, M.2    Teleman, J.3    Malmstrom, J.4    Levander, F.5
  • 30
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team. The R Foundation for Statistical Computing: Vienna, Austria
    • R Development Core Team. R: A Language and Environment for Statistical Computing; The R Foundation for Statistical Computing: Vienna, Austria, 2014.
    • (2014) R: A Language and Environment for Statistical Computing
  • 31
    • 0242629046 scopus 로고    scopus 로고
    • The diagnostic odds ratio: A single indicator of test performance
    • Glas, A. S.; Lijmer, J. G.; Prins, M. H.; Bonsel, G. J.; Bossuyt, P. M. The diagnostic odds ratio: a single indicator of test performance J. Clin. Epidemiol. 2003, 56 (11) 1129-1135 10.1016/S0895-4356(03)00177-X
    • (2003) J. Clin. Epidemiol. , vol.56 , Issue.11 , pp. 1129-1135
    • Glas, A.S.1    Lijmer, J.G.2    Prins, M.H.3    Bonsel, G.J.4    Bossuyt, P.M.5
  • 33
    • 23944482140 scopus 로고    scopus 로고
    • Dissection of foliage and tuber late blight resistance in mapping populations of potato
    • Park, T.-H.; Vleeshouwers, V. G. A. A.; Kim, J.-B.; Hutten, R. C. B.; Visser, R. G. F. Dissection of foliage and tuber late blight resistance in mapping populations of potato Euphytica 2005, 143 (1-2) 75-83 10.1007/s10681-005-2658-0
    • (2005) Euphytica , vol.143 , Issue.12 , pp. 75-83
    • Park, T.-H.1    Vleeshouwers, V.G.A.A.2    Kim, J.-B.3    Hutten, R.C.B.4    Visser, R.G.F.5
  • 35
    • 30644464444 scopus 로고    scopus 로고
    • Gene selection and classification of microarray data using random forest
    • Díaz-Uriarte, R.; Alvarez de Andrés, S. Gene selection and classification of microarray data using random forest BMC Bioinf. 2006, 7 (1) 3 10.1186/1471-2105-7-3
    • (2006) BMC Bioinf. , vol.7 , Issue.1 , pp. 3
    • Díaz-Uriarte, R.1    Alvarez De Andrés, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.