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Volumn 10, Issue 12, 2015, Pages

Property Graph vs RDF triple store: A comparison on glycan substructure search

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; GLYCAN; GLYCAN BINDING PROTEIN; UNCLASSIFIED DRUG; POLYSACCHARIDE;

EID: 84957111696     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0144578     Document Type: Article
Times cited : (54)

References (37)
  • 1
    • 0001627802 scopus 로고
    • Nomenclature of glycoproteins, glycopeptides and peptidoglycans
    • IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN)
    • Sharon N. IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). Nomenclature of glycoproteins, glycopeptides and peptidoglycans. Glycoconj J. 1986; 3: 123-133. doi: 10.1007/BF01049370
    • (1986) Glycoconj J , vol.3 , pp. 123-133
    • Sharon, N.1
  • 2
    • 45049086740 scopus 로고    scopus 로고
    • GlycoCT-A unifying sequence format for carbohydrates
    • Herget S, Ranzinger R, Maass K, Lieth C-W v. d. GlycoCT-A unifying sequence format for carbohydrates. Carbohydr Res. 2008; 343: 2162-2171. doi: 10.1016/j.carres.2008.03.011
    • (2008) Carbohydr Res , vol.343 , pp. 2162-2171
    • Herget, S.1    Ranzinger, R.2    Maass, K.3    Lieth, C.-W.4
  • 3
    • 28444485613 scopus 로고    scopus 로고
    • GLYDE-An expressive XML standard for the representation of glycan structure
    • Sahoo SS, Thomas C, Sheth A, Henson C, York WS. GLYDE-An expressive XML standard for the representation of glycan structure. Carbohydr Res. 2005; 340: 2802-2807.
    • (2005) Carbohydr Res , vol.340 , pp. 2802-2807
    • Sahoo, S.S.1    Thomas, C.2    Sheth, A.3    Henson, C.4    York, W.S.5
  • 5
    • 0031546134 scopus 로고    scopus 로고
    • Nomenclature of carbohydrates
    • International Union of Pure and Applied Chemistry and International Union of Biochemistry and Molecular Biology. Joint Commission on Biochemical Nomenclature
    • McNaught AD. International Union of Pure and Applied Chemistry and International Union of Biochemistry and Molecular Biology. Joint Commission on Biochemical Nomenclature. Nomenclature of carbohydrates. Carbohydr Res. 1997; 297: 1-92.
    • (1997) Carbohydr Res , vol.297 , pp. 1-92
    • McNaught, A.D.1
  • 6
    • 3242885434 scopus 로고    scopus 로고
    • KCaM (KEGG Carbohydrate Matcher): A software tool for analyzing the structures of carbohydrate sugar chains
    • Aoki KF, Yamaguchi A, Ueda N, Akutsu T, Mamitsuka H, Goto S, et al. KCaM (KEGG Carbohydrate Matcher): A software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Res. 2004; 32: W267-272. doi: 10.1093/nar/gkh473
    • (2004) Nucleic Acids Res , vol.32 , pp. W267-272
    • Aoki, K.F.1    Yamaguchi, A.2    Ueda, N.3    Akutsu, T.4    Mamitsuka, H.5    Goto, S.6
  • 7
    • 84902497562 scopus 로고    scopus 로고
    • KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics
    • Kotera M, Tabei Y, Yamanishi Y, Moriya Y, Tokimatsu T, Kanehisa M, et al. KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. BMC Syst Biol. 2013; 7: S2. doi: 10.1186/1752-0509-7-S6-S2
    • (2013) BMC Syst Biol , vol.7 , pp. S2
    • Kotera, M.1    Tabei, Y.2    Yamanishi, Y.3    Moriya, Y.4    Tokimatsu, T.5    Kanehisa, M.6
  • 11
    • 0004106191 scopus 로고    scopus 로고
    • New York NY: Cold Spring Harbor Lab. Press
    • Varki A, editor. Essentials of glycobiology. New York, NY: Cold Spring Harbor Lab. Press; 1999.
    • (1999) Essentials of Glycobiology
    • Varki, A.1
  • 13
    • 78651341449 scopus 로고    scopus 로고
    • GlycomeDB-A unified database for carbohydrate structures
    • Ranzinger R, Herget S, von der Lieth C-W, Frank M. GlycomeDB-A unified database for carbohydrate structures. Nucleic Acids Res. 2011; 39: D373-D376. doi: 10.1093/nar/gkq1014
    • (2011) Nucleic Acids Res , vol.39 , pp. D373-D376
    • Ranzinger, R.1    Herget, S.2    Von Der Lieth, C.-W.3    Frank, M.4
  • 15
    • 84979545696 scopus 로고    scopus 로고
    • Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts
    • gkv840
    • Toukach PV, Egorova KS. Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts. Nucleic Acids Res. 2015; gkv840. doi: 10.1093/nar/gkv840
    • (2015) Nucleic Acids Res
    • Toukach, P.V.1    Egorova, K.S.2
  • 18
    • 68349130415 scopus 로고    scopus 로고
    • RDF support in the virtuoso DBMS
    • Pellegrini T Auer S Tochtermann K Schaffert S editors. Berlin Heidelberg Springer Berlin Heidelberg
    • Erling O, Mikhailov I. RDF Support in the Virtuoso DBMS. In: Pellegrini T, Auer S, Tochtermann K, Schaffert S, editors. Networked Knowledge-Networked Media. Berlin, Heidelberg: Springer Berlin Heidelberg; 2009. pp. 7-24. Available: http://link.springer.com/10.1007/978-3-642-02184-8-2.
    • (2009) Networked Knowledge-Networked Media , pp. 7-24
    • Erling, O.1    Mikhailov, I.2
  • 19
    • 84866262574 scopus 로고    scopus 로고
    • Sesame: A generic architecture for storing and querying RDF and RDF Schema
    • Horrocks I Hendler J editors Berlin, Heidelberg Springer Berlin Heidelberg 2002
    • Broekstra J, Kampman A, van Harmelen F. Sesame: A Generic Architecture for Storing and Querying RDF and RDF Schema. In: Horrocks I, Hendler J, editors. The Semantic Web-ISWC 2002. Berlin, Heidelberg: Springer Berlin Heidelberg; 2002. pp. 54-68. Available: http://link.springer.com/10.1007/3-540-48005-6-7.
    • (2002) The Semantic Web-ISWC , pp. 54-68
    • Broekstra, J.1    Kampman, A.2    Van Harmelen, F.3
  • 20
    • 84957111930 scopus 로고    scopus 로고
    • Accessed 29 Oct
    • Apache Jena [Internet]. Available: https://jena.apache.org/. Accessed 29 Oct 2015.
    • (2015) Apache Jena [Internet]
  • 22
    • 70349326274 scopus 로고    scopus 로고
    • The repertoire of glycan determinants in the human glycome
    • Cummings RD. The repertoire of glycan determinants in the human glycome. Mol Biosyst. 2009; 5: 1087. doi: 10.1039/b907931a
    • (2009) Mol Biosyst , vol.5 , pp. 1087
    • Cummings, R.D.1
  • 23
    • 59449087328 scopus 로고    scopus 로고
    • Introduction to glycome informatics
    • Aoki-Kinoshita KF. [Introduction to glycome informatics]. Seikagaku. 2008; 80: 1038-1041.
    • (2008) Seikagaku , vol.80 , pp. 1038-1041
    • Aoki-Kinoshita, K.F.1
  • 25
    • 84957109485 scopus 로고    scopus 로고
    • Neo4j Graph Database [Internet] Accessed 2 Jul
    • What is a Graph Database? In: Neo4j Graph Database [Internet]. Available: http://neo4j.com/developer/graph-database/. Accessed 2 Jul 2015.
    • (2015) What Is A Graph Database?
  • 29
    • 84957108631 scopus 로고    scopus 로고
    • The Neo4j Manual v2.2.3 [Internet] Available Accessed 2 Jul
    • What is Cypher?-The Neo4j Manual v2.2.3 [Internet]. Available: http://neo4j.com/docs/stable/cypherintroduction. html. Accessed 2 Jul 2015.
    • (2015) What Is Cypher?
  • 34
    • 84979620688 scopus 로고    scopus 로고
    • Taniguchi N Suzuki A Ito Y Narimatsu H Kawasaki T Hase S editors. Experimental Glycoscience. Tokyo Springer Japan
    • Kawasaki T, Nakao H, Tominaga T. GlycoEpitope: A Database of Carbohydrate Epitopes and Antibodies. In: Taniguchi N, Suzuki A, Ito Y, Narimatsu H, Kawasaki T, Hase S, editors. Experimental Glycoscience. Tokyo: Springer Japan; 2008. pp. 429-431. Available: http://www.springerlink.com/index/10.1007/978-4-431-77922-3-104.
    • (2008) GlycoEpitope: A Database of Carbohydrate Epitopes and Antibodies , pp. 429-431
    • Kawasaki, T.1    Nakao, H.2    Tominaga, T.3
  • 36
    • 49949092526 scopus 로고    scopus 로고
    • Aberer K Choi K-S Noy N Allemang D Lee K-I Nixon L et al. editors. The Semantic Web Springer Berlin Heidelberg
    • Auer S, Bizer C, Kobilarov G, Lehmann J, Cyganiak R, Ives Z. DBpedia: A Nucleus for a Web of Open Data. In: Aberer K, Choi K-S, Noy N, Allemang D, Lee K-I, Nixon L, et al., editors. The Semantic Web. Springer Berlin Heidelberg; 2007. pp. 722-735. Available: http://link.springer.com/chapter/10.1007/978-3-540-76298-0-52.
    • (2007) DBpedia: A Nucleus for A Web of Open Data , pp. 722-735
    • Auer, S.1    Bizer, C.2    Kobilarov, G.3    Lehmann, J.4    Cyganiak, R.5    Ives, Z.6
  • 37
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: A hub for protein information
    • The UniProt Consortium
    • The UniProt Consortium. UniProt: A hub for protein information. Nucleic Acids Res. 2015; 43: D204-D212. doi: 10.1093/nar/gku989
    • (2015) Nucleic Acids Res , vol.43 , pp. D204-D212


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.