메뉴 건너뛰기




Volumn 15, Issue , 2014, Pages

Toolboxes for a standardised and systematic study of glycans

(17)  Campbell, Matthew P a   Ranzinger, René b   Lütteke, Thomas c   Mariethoz, Julien d   Hayes, Catherine A e   Zhang, Jingyu a   Akune, Yukie f   Aoki Kinoshita, Kiyoko F f   Damerell, David g,k   Carta, Giorgio h   York, Will S b   Haslam, Stuart M g   Narimatsu, Hisashi i   Rudd, Pauline M h   Karlsson, Niclas G d   Packer, Nicolle H a   Lisacek, Frédérique d,j  


Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; BIOSYNTHESIS; POLYSACCHARIDES; SOFTWARE ENGINEERING;

EID: 84901273059     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-15-S1-S9     Document Type: Article
Times cited : (51)

References (48)
  • 1
    • 33748195979 scopus 로고    scopus 로고
    • Glycosylation in cellular mechanisms of health and disease
    • Ohtsubo K, Marth JD: Glycosylation in cellular mechanisms of health and disease. Cell 2006, 126(5):855-867.
    • (2006) Cell , vol.126 , Issue.5 , pp. 855-867
    • Ohtsubo, K.1    Marth, J.D.2
  • 8
    • 71049172430 scopus 로고    scopus 로고
    • Glycome-DB.org: A portal for querying across the digital world of carbohydrate sequences
    • Ranzinger R, Frank M, von der Lieth CW, Herget S: Glycome-DB.org: A portal for querying across the digital world of carbohydrate sequences. Glycobiology 2009, 19(11):1563-1567.
    • (2009) Glycobiology , vol.19 , Issue.11 , pp. 1563-1567
    • Ranzinger, R.1    Frank, M.2    von der Lieth, C.W.3    Herget, S.4
  • 13
    • 35948955219 scopus 로고    scopus 로고
    • Exploring the structural diversity of mammalian carbohydrates ("glycospace") by statistical databank analysis
    • Werz DB, Ranzinger R, Herget S, Adibekian A, von der Lieth CW, Seeberger PH: Exploring the structural diversity of mammalian carbohydrates ("glycospace") by statistical databank analysis. ACS Chem Biol 2007, 2(10):685-691.
    • (2007) ACS Chem Biol , vol.2 , Issue.10 , pp. 685-691
    • Werz, D.B.1    Ranzinger, R.2    Herget, S.3    Adibekian, A.4    von der Lieth, C.W.5    Seeberger, P.H.6
  • 14
    • 52249120592 scopus 로고    scopus 로고
    • Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
    • Herget S, Toukach P, Ranzinger R, Hull W, Knirel Y, von der Lieth CW: Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans. BMC Struct Biol 2008, 8(1):35.
    • (2008) BMC Struct Biol , vol.8 , Issue.1 , pp. 35
    • Herget, S.1    Toukach, P.2    Ranzinger, R.3    Hull, W.4    Knirel, Y.5    von der Lieth, C.W.6
  • 15
    • 37849189530 scopus 로고    scopus 로고
    • Nomenclature of carbohydrates (recommendations 1996)
    • McNaught AD: Nomenclature of carbohydrates (recommendations 1996). Adv Carbohydr Chem Biochem 1997, 52:43-177.
    • (1997) Adv Carbohydr Chem Biochem , vol.52 , pp. 43-177
    • McNaught, A.D.1
  • 16
    • 0034773106 scopus 로고    scopus 로고
    • LINUCS: linear notation for unique description of carbohydrate sequences
    • Bohne-Lang A, Lang E, Förster T, von der Lieth CW: LINUCS: linear notation for unique description of carbohydrate sequences. Carbohydr Res 2001, 336(1):1-11.
    • (2001) Carbohydr Res , vol.336 , Issue.1 , pp. 1-11
    • Bohne-Lang, A.1    Lang, E.2    Förster, T.3    von der Lieth, C.W.4
  • 17
    • 79952587208 scopus 로고    scopus 로고
    • Bacterial carbohydrate structure database 3: principles and realization
    • Toukach PV: Bacterial carbohydrate structure database 3: principles and realization. J Chem Inf Model 2011, 51(1):159-170.
    • (2011) J Chem Inf Model , vol.51 , Issue.1 , pp. 159-170
    • Toukach, P.V.1
  • 19
  • 20
    • 3242885434 scopus 로고    scopus 로고
    • KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains
    • Aoki KF, Yamaguchi A, Ueda N, Akutsu T, Mamitsuka H, Goto S, Kanehisa M: KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Res 2004, 32(Web Server):W267-W272.
    • (2004) Nucleic Acids Res , vol.32 , Issue.Web Server , pp. W267-W272
    • Aoki, K.F.1    Yamaguchi, A.2    Ueda, N.3    Akutsu, T.4    Mamitsuka, H.5    Goto, S.6    Kanehisa, M.7
  • 22
    • 28444485613 scopus 로고    scopus 로고
    • GLYDE-an expressive XML standard for the representation of glycan structure
    • Sahoo SS, Thomas C, Sheth A, Henson C, York WS: GLYDE-an expressive XML standard for the representation of glycan structure. Carbohydr Res 2005, 340(18):2802-2807.
    • (2005) Carbohydr Res , vol.340 , Issue.18 , pp. 2802-2807
    • Sahoo, S.S.1    Thomas, C.2    Sheth, A.3    Henson, C.4    York, W.S.5
  • 23
    • 80055111785 scopus 로고    scopus 로고
    • Symbol nomenclature for representing glycan structures: Extension to cover different carbohydrate types
    • Harvey DJ, Merry AH, Royle L, Campbell MP, Rudd PM: Symbol nomenclature for representing glycan structures: Extension to cover different carbohydrate types. Proteomics 2011, 11(22):4291-4295.
    • (2011) Proteomics , vol.11 , Issue.22 , pp. 4291-4295
    • Harvey, D.J.1    Merry, A.H.2    Royle, L.3    Campbell, M.P.4    Rudd, P.M.5
  • 24
    • 68549091059 scopus 로고    scopus 로고
    • Proposal for a standard system for drawing structural diagrams of N- and O-linked carbohydrates and related compounds
    • Harvey DJ, Merry AH, Royle L, Campbell MP, Dwek RA, Rudd PM: Proposal for a standard system for drawing structural diagrams of N- and O-linked carbohydrates and related compounds. Proteomics 2009, 9(15):3796-3801.
    • (2009) Proteomics , vol.9 , Issue.15 , pp. 3796-3801
    • Harvey, D.J.1    Merry, A.H.2    Royle, L.3    Campbell, M.P.4    Dwek, R.A.5    Rudd, P.M.6
  • 26
    • 34848927484 scopus 로고    scopus 로고
    • The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures
    • Ceroni A, Dell A, Haslam SM: The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures. Source Code Biol Med 2007, 2:3.
    • (2007) Source Code Biol Med , vol.2 , pp. 3
    • Ceroni, A.1    Dell, A.2    Haslam, S.M.3
  • 27
    • 84869475601 scopus 로고    scopus 로고
    • The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developments
    • Damerell D, Ceroni A, Maass K, Ranzinger R, Dell A, Haslam SM: The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developments. Biol Chem 2012, 393(11):1357-1362.
    • (2012) Biol Chem , vol.393 , Issue.11 , pp. 1357-1362
    • Damerell, D.1    Ceroni, A.2    Maass, K.3    Ranzinger, R.4    Dell, A.5    Haslam, S.M.6
  • 28
    • 77956030977 scopus 로고    scopus 로고
    • The RINGS resource for glycome informatics analysis and data mining on the Web
    • Akune Y, Hosoda M, Kaiya S, Shinmachi D, Aoki-Kinoshita KF: The RINGS resource for glycome informatics analysis and data mining on the Web. Omics 2010, 14(4):475-486.
    • (2010) Omics , vol.14 , Issue.4 , pp. 475-486
    • Akune, Y.1    Hosoda, M.2    Kaiya, S.3    Shinmachi, D.4    Aoki-Kinoshita, K.F.5
  • 29
  • 30
    • 45549094069 scopus 로고    scopus 로고
    • GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans
    • Ceroni A, Maass K, Geyer H, Geyer R, Dell A, Haslam SM: GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans. J Proteome Res 2008, 7(4):1650-1659.
    • (2008) J Proteome Res , vol.7 , Issue.4 , pp. 1650-1659
    • Ceroni, A.1    Maass, K.2    Geyer, H.3    Geyer, R.4    Dell, A.5    Haslam, S.M.6
  • 35
    • 59849100756 scopus 로고    scopus 로고
    • SOACS index: an easy NMR-based query for glycan retrieval
    • Maes E, Bonachera F, Strecker G, Guerardel Y: SOACS index: an easy NMR-based query for glycan retrieval. Carbohydr Res 2009, 344(3):322-330.
    • (2009) Carbohydr Res , vol.344 , Issue.3 , pp. 322-330
    • Maes, E.1    Bonachera, F.2    Strecker, G.3    Guerardel, Y.4
  • 36
    • 84872685228 scopus 로고    scopus 로고
    • Glycobioinformatics: current strategies and tools for data mining in MS-based glycoproteomics
    • Li F, Glinskii OV, Glinsky VV: Glycobioinformatics: current strategies and tools for data mining in MS-based glycoproteomics. Proteomics 2013, 13(2):341-354.
    • (2013) Proteomics , vol.13 , Issue.2 , pp. 341-354
    • Li, F.1    Glinskii, O.V.2    Glinsky, V.V.3
  • 38
    • 0037250530 scopus 로고    scopus 로고
    • GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources 2003 update
    • Cooper CA, Joshi HJ, Harrison MJ, Wilkins MR, Packer NH: GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update. Nucleic Acids Res 2003, 31(1):511-513.
    • (2003) Nucleic Acids Res , vol.31 , Issue.1 , pp. 511-513
    • Cooper, C.A.1    Joshi, H.J.2    Harrison, M.J.3    Wilkins, M.R.4    Packer, N.H.5
  • 39
    • 0035170507 scopus 로고    scopus 로고
    • GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sources
    • Cooper CA, Harrison MJ, Wilkins MR, Packer NH: GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sources. Nucleic Acids Res 2001, 29(1):332-335.
    • (2001) Nucleic Acids Res , vol.29 , Issue.1 , pp. 332-335
    • Cooper, C.A.1    Harrison, M.J.2    Wilkins, M.R.3    Packer, N.H.4
  • 41
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • UniProt Consortium: Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 2012, 40(Database):D71-75.
    • (2012) Nucleic Acids Res , vol.40 , Issue.DATABASE , pp. D71-75
  • 44
    • 58849162321 scopus 로고    scopus 로고
    • Analysis and validation of carbohydrate three-dimensional structures
    • Lutteke T: Analysis and validation of carbohydrate three-dimensional structures. Acta Crystallogr D Biol Crystallogr 2009, 65(Pt 2):156-168.
    • (2009) Acta Crystallogr D Biol Crystallogr , vol.65 , pp. 156-168
    • Lutteke, T.1
  • 45
    • 13444283836 scopus 로고    scopus 로고
    • Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB
    • Lutteke T, Frank M, von der Lieth CW: Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB. Nucleic Acids Res 2005, 33(Database):D242-246.
    • (2005) Nucleic Acids Res , vol.33 , Issue.DATABASE , pp. D242-246
    • Lutteke, T.1    Frank, M.2    von der Lieth, C.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.