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Volumn 31, Issue 6, 2015, Pages 919-925

GlycoRDF: An ontology to standardize glycomics data in RDF

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[No Author keywords available]

Indexed keywords

POLYSACCHARIDE;

EID: 84925250068     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu732     Document Type: Article
Times cited : (39)

References (37)
  • 1
    • 84904731418 scopus 로고    scopus 로고
    • Introducing glycomics data into the Semantic Web
    • Aoki-Kinoshita, K.F. et al. (2013a) Introducing glycomics data into the Semantic Web. J. Biomed. Semantics, 4, 39.
    • (2013) J. Biomed. Semantics , vol.4 , pp. 39
    • Aoki-Kinoshita, K.F.1
  • 2
    • 84887865297 scopus 로고    scopus 로고
    • The fifth ACGG-DB meeting report: Towards an international glycan structure repository
    • Aoki-Kinoshita, K.F. et al. (2013b) The fifth ACGG-DB meeting report: towards an international glycan structure repository. Glycobiology, 23, 1422-1424.
    • (2013) Glycobiology , vol.23 , pp. 1422-1424
    • Aoki-Kinoshita, K.F.1
  • 3
    • 0036586710 scopus 로고    scopus 로고
    • A novel Linear Code(R) nomenclature for complex carbohydrates
    • Banin, E. et al. (2002) A novel Linear Code(R) nomenclature for complex carbohydrates. Trends Glycosci. Glycotechnol., 14, 127-137.
    • (2002) Trends Glycosci. Glycotechnol. , vol.14 , pp. 127-137
    • Banin, E.1
  • 4
    • 48249158190 scopus 로고    scopus 로고
    • Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
    • Belleau, F. et al. (2008) Bio2RDF: towards a mashup to build bioinformatics knowledge systems. J. Biomed. Inform., 41, 706-716.
    • (2008) J. Biomed. Inform. , vol.41 , pp. 706-716
    • Belleau, F.1
  • 5
    • 84856610310 scopus 로고    scopus 로고
    • UniCarbKB: Putting the pieces together for glycomics research
    • Campbell, M.P. et al. (2011) UniCarbKB: putting the pieces together for glycomics research. Proteomics, 11, 4117-4121.
    • (2011) Proteomics , vol.11 , pp. 4117-4121
    • Campbell, M.P.1
  • 6
    • 84901273059 scopus 로고    scopus 로고
    • Toolboxes for a standardised and systematic study of glycans
    • Campbell, M.P. et al. (2014a) Toolboxes for a standardised and systematic study of glycans. BMC Bioinformatics, 15 (Suppl. 1), S9.
    • (2014) BMC Bioinformatics , vol.15 , pp. S9
    • Campbell, M.P.1
  • 7
    • 84891782475 scopus 로고    scopus 로고
    • UniCarbKB: Building a knowledge platform for glycoproteomics
    • Campbell, M.P. et al. (2014b) UniCarbKB: building a knowledge platform for glycoproteomics. Nucleic Acids Res., 42, D215-D221.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D215-D221
    • Campbell, M.P.1
  • 8
    • 0035170507 scopus 로고    scopus 로고
    • GlycoSuiteDB: A new curated relational database of glycoprotein glycan structures and their biological sources
    • Cooper, C.A. et al. (2001) GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sources. Nucleic Acids Res., 29, 332-335.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 332-335
    • Cooper, C.A.1
  • 9
    • 0037250530 scopus 로고    scopus 로고
    • GlycoSuiteDB: A curated relational database of glycoprotein glycan structures and their biological sources. 2003 update
    • Cooper, C.A. et al. (2003) GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update. Nucleic Acids Res., 31, 511-513.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 511-513
    • Cooper, C.A.1
  • 10
    • 0029436725 scopus 로고
    • Challenges in integrating biological data sources
    • Davidson, S.B. et al. (1995) Challenges in integrating biological data sources. J. Comput. Biol., 2, 557-572.
    • (1995) J. Comput. Biol. , vol.2 , pp. 557-572
    • Davidson, S.B.1
  • 12
    • 84899651236 scopus 로고    scopus 로고
    • Expansion of coverage of Carbohydrate Structure Database (CSDB)
    • Egorova, K.S. and Toukach, P.V. (2014) Expansion of coverage of Carbohydrate Structure Database (CSDB). Carbohydr. Res., 389, 112-114.
    • (2014) Carbohydr. Res. , vol.389 , pp. 112-114
    • Egorova, K.S.1    Toukach, P.V.2
  • 13
    • 77955714199 scopus 로고    scopus 로고
    • Bioinformatics and molecular modeling in glycobiology
    • Frank, M. and Schloissnig, S. (2010) Bioinformatics and molecular modeling in glycobiology. Cell. Mol. Life Sci., 67, 2749-2772.
    • (2010) Cell. Mol. Life Sci. , vol.67 , pp. 2749-2772
    • Frank, M.1    Schloissnig, S.2
  • 14
    • 58149365542 scopus 로고
    • Toward principles for the design of ontologies used for knowledge sharing?
    • Gruber, T.R. (1995) Toward principles for the design of ontologies used for knowledge sharing?. Int. J. Hum. Comput. Stud., 43, 907-928.
    • (1995) Int. J. Hum. Comput. Stud. , vol.43 , pp. 907-928
    • Gruber, T.R.1
  • 15
    • 33646149392 scopus 로고    scopus 로고
    • KEGG as a glycome informatics resource
    • Hashimoto, K. et al. (2006) KEGG as a glycome informatics resource. Glycobiology, 16, 63R-70R.
    • (2006) Glycobiology , vol.16 , pp. 63R-70R
    • Hashimoto, K.1
  • 16
    • 45049086740 scopus 로고    scopus 로고
    • GlycoCT-A unifying sequence format for carbohydrates
    • Herget, S. et al. (2008) GlycoCT-a unifying sequence format for carbohydrates. Carbohydr. Res., 343, 2162-2171.
    • (2008) Carbohydr. Res. , vol.343 , pp. 2162-2171
    • Herget, S.1
  • 17
    • 84899523552 scopus 로고    scopus 로고
    • The EBI RDF platform: Linked open data for the life sciences
    • Jupp, S. et al. (2014) The EBI RDF platform: linked open data for the life sciences. Bioinformatics, 30, 1338-1339.
    • (2014) Bioinformatics , vol.30 , pp. 1338-1339
    • Jupp, S.1
  • 18
    • 84866117724 scopus 로고    scopus 로고
    • Large-scale identification of N-glycosylated proteins of mouse tissues and construction of a glycoprotein database, GlycoProtDB
    • Kaji, H. et al. (2012) Large-scale identification of N-glycosylated proteins of mouse tissues and construction of a glycoprotein database, GlycoProtDB. J. Proteome Res., 11, 4553-4566.
    • (2012) J. Proteome Res. , vol.11 , pp. 4553-4566
    • Kaji, H.1
  • 19
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of largescale molecular data sets
    • Kanehisa, M. et al. (2012) KEGG for integration and interpretation of largescale molecular data sets. Nucleic Acids Res., 40, D109-D114.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D109-D114
    • Kanehisa, M.1
  • 20
    • 33749186969 scopus 로고    scopus 로고
    • GlycoEpitope: The integrated database of carbohydrate antigens and antibodies
    • Kawasaki, T. et al. (2006) GlycoEpitope: the integrated database of carbohydrate antigens and antibodies. Trends in Glycosci. Glycotechnol., 18, 267-272.
    • (2006) Trends in Glycosci. Glycotechnol. , vol.18 , pp. 267-272
    • Kawasaki, T.1
  • 21
    • 0028230073 scopus 로고
    • Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches
    • Lowe, H.J. and Barnett, G.O. (1994) Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches. J. Am. Med. Assoc., 271, 1103-1108.
    • (1994) J. Am. Med. Assoc. , vol.271 , pp. 1103-1108
    • Lowe, H.J.1    Barnett, G.O.2
  • 22
    • 33646160614 scopus 로고    scopus 로고
    • GLYCOSCIENCES.de: An Internet portal to support glycomics and glycobiology research
    • Lü tteke, T. et al. (2006) GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research. Glycobiology, 16, 71R-81R.
    • (2006) Glycobiology , vol.16 , pp. 71R-81R
    • Lü Tteke, T.1
  • 23
    • 58849120468 scopus 로고    scopus 로고
    • Web resources for the glycoscientist
    • Lütteke, T. (2008) Web resources for the glycoscientist. Chembiochem, 9, 2155-2160.
    • (2008) Chembiochem , vol.9 , pp. 2155-2160
    • Lütteke, T.1
  • 24
    • 84862664135 scopus 로고    scopus 로고
    • The use of glycoinformatics in glycochemistry
    • Lü tteke, T. (2012) The use of glycoinformatics in glycochemistry. Beilstein J. Org. Chem., 8, 915-929.
    • (2012) Beilstein J. Org. Chem. , vol.8 , pp. 915-929
    • Lü Tteke, T.1
  • 25
    • 84879329259 scopus 로고    scopus 로고
    • The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary
    • Mayer, G. et al. (2013) The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary. Database, 2013, bat009.
    • (2013) Database , vol.2013 , pp. bat009
    • Mayer, G.1
  • 26
    • 0030627767 scopus 로고    scopus 로고
    • Nomenclature of carbohydrates (recommendations 1996)
    • McNaught, A.D. (1997) Nomenclature of carbohydrates (recommendations 1996). Adv. Carbohydr. Chem. Biochem., 52, 43-177.
    • (1997) Adv. Carbohydr. Chem. Biochem. , vol.52 , pp. 43-177
    • McNaught, A.D.1
  • 27
    • 38149046602 scopus 로고    scopus 로고
    • Frontiers in glycomics: Bioinformatics and biomarkers in disease. An NIH white paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11-13, 2006)
    • Packer, N.H. et al. (2008) Frontiers in glycomics: bioinformatics and biomarkers in disease. An NIH white paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11-13, 2006). Proteomics, 8, 8-20.
    • (2008) Proteomics , vol.8 , pp. 8-20
    • Packer, N.H.1
  • 28
    • 33646134123 scopus 로고    scopus 로고
    • Advancing glycomics: Implementation strategies at the consortium for functional glycomics
    • Raman, R. et al. (2006) Advancing glycomics: implementation strategies at the consortium for functional glycomics. Glycobiology, 16, 82R-90R.
    • (2006) Glycobiology , vol.16 , pp. 82R-90R
    • Raman, R.1
  • 29
    • 54049090792 scopus 로고    scopus 로고
    • GlycomeDB-integration of open-access carbohydrate structure databases
    • Ranzinger, R. et al. (2008) GlycomeDB-integration of open-access carbohydrate structure databases. BMC Bioinformatics, 9, 384.
    • (2008) BMC Bioinformatics , vol.9 , pp. 384
    • Ranzinger, R.1
  • 30
    • 71049172430 scopus 로고    scopus 로고
    • Glycome-DB.org: A portal for querying across the digital world of carbohydrate sequences
    • Ranzinger, R. et al. (2009) Glycome-DB.org: a portal for querying across the digital world of carbohydrate sequences. Glycobiology, 19, 1563-1567.
    • (2009) Glycobiology , vol.19 , pp. 1563-1567
    • Ranzinger, R.1
  • 31
    • 0038745614 scopus 로고    scopus 로고
    • Integrating biological databases, Nat
    • Stein, L.D. (2003) Integrating biological databases, Nat. Rev. Genet., 4, 337-345.
    • (2003) Rev. Genet. , vol.4 , pp. 337-345
    • Stein, L.D.1
  • 32
    • 84903289596 scopus 로고    scopus 로고
    • WURCS: The Web3 unique representation of carbohydrate structures
    • Tanaka, K. et al. (2014) WURCS: the Web3 unique representation of carbohydrate structures. J. Chem. Inf. Model., 54, 1558-1566.
    • (2014) J. Chem. Inf. Model. , vol.54 , pp. 1558-1566
    • Tanaka, K.1
  • 33
    • 33846115518 scopus 로고    scopus 로고
    • Sharing of worldwide distributed carbohydraterelated digital resources: Online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
    • Toukach, P. et al. (2007) Sharing of worldwide distributed carbohydraterelated digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de. Nucleic Acids Res., 35, D280-D286.
    • (2007) Nucleic Acids Res. , vol.35 , pp. D280-D286
    • Toukach, P.1
  • 34
    • 79952587208 scopus 로고    scopus 로고
    • Bacterial carbohydrate structure database 3: Principles and realization
    • Toukach, P.V. (2011) Bacterial carbohydrate structure database 3: principles and realization. J. Chem. Inf. Model., 51, 159-170.
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 159-170
    • Toukach, P.V.1
  • 35
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • UniProtConsortium. (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Research, 40, D71-D75.
    • (2012) Nucleic Acids Research , vol.40 , pp. D71-D75
    • UniProtConsortium1
  • 36
    • 79952549595 scopus 로고    scopus 로고
    • EUROCarbDB: An open-access platform for glycoinformatics
    • von der Lieth, C.W. et al. (2011) EUROCarbDB: an open-access platform for glycoinformatics. Glycobiology, 21, 493-502.
    • (2011) Glycobiology , vol.21 , pp. 493-502
    • Von Der Lieth, C.W.1
  • 37
    • 0033957466 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Wheeler, D.L. et al. (2000) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 28, 10-14.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 10-14
    • Wheeler, D.L.1


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