메뉴 건너뛰기




Volumn 2452, Issue , 2002, Pages 44-59

Methods for inferring block-wise ancestral history from haploid sequences the haplotype coloring problem

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; COMBINATORIAL OPTIMIZATION;

EID: 84956977089     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/3-540-45784-4_4     Document Type: Conference Paper
Times cited : (24)

References (29)
  • 1
    • 0000353178 scopus 로고
    • A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains
    • Baum, L.E., Petrie, T., Soules, G., and Weiss, N. A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains. Annals Math. Stat., 41, 164-171, 1970.
    • (1970) Annals Math. Stat , vol.41 , pp. 164-171
    • Baum, L.E.1    Petrie, T.2    Soules, G.3    Weiss, N.4
  • 2
    • 0025269067 scopus 로고
    • Inference of Haplotypes from PCR-amplified samples of diploid populations
    • Clark, A. G. Inference of Haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol., 7, 111-122, 1990.
    • (1990) Mol. Biol. Evol , vol.7 , pp. 111-122
    • Clark, A.G.1
  • 4
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm
    • Dempster, A.P., Laird, N.M., and Rubin, D.B. Maximum likelihood from incomplete data via the EM algorithm. J. Royal Stat. Soc. B, 39, 1-38, 1977.
    • (1977) J. Royal Stat. Soc. B , vol.39 , pp. 1-38
    • Dempster, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 5
    • 0000927535 scopus 로고
    • Paths, trees, and flowers
    • Edmonds, J. Paths, trees, and flowers. Canad. J. Math., 17, 449-467, 1965.
    • (1965) Canad. J. Math , vol.17 , pp. 449-467
    • Edmonds, J.1
  • 6
    • 0035675042 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • Fearnhead, P. and Donnelly, P. Estimating recombination rates from population genetic data. Genetics, 159:1299-1318, 2001.
    • (2001) Genetics , vol.159 , pp. 1299-1318
    • Fearnhead, P.1    Donnelly, P.2
  • 7
    • 84987049379 scopus 로고
    • Efficient algorithms for inferring evolutionary history
    • Gusfield, D. Efficient algorithms for inferring evolutionary history. Networks, 21:19-28, 1991.
    • (1991) Networks , vol.21 , pp. 19-28
    • Gusfield, D.1
  • 8
    • 0036374329 scopus 로고    scopus 로고
    • Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions
    • Gusfield, D. Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions. In Proc. 6th Intl. Conf. Comp. Biol., RECOMB’02, 166-175, 2002.
    • (2002) Proc. 6Th Intl. Conf. Comp. Biol., RECOMB’02 , pp. 166-175
    • Gusfield, D.1
  • 9
    • 0027471670 scopus 로고
    • A heuristic method to reconstruct the history of sequences subject to recombination
    • Hein, J. A heuristic method to reconstruct the history of sequences subject to recombination. J. Mol. Evol., 20, 402-411, 1993.
    • (1993) J. Mol. Evol , vol.20 , pp. 402-411
    • Hein, J.1
  • 10
    • 0020744702 scopus 로고
    • Properties of the neutral allele model with intergenic recombination
    • Hudson, R.R. Properties of the neutral allele model with intergenic recombination. Theoret. Pop. Biol., 23, 183-201, 1983.
    • (1983) Theoret. Pop. Biol , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 11
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R.R. and Kaplan, N.L. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics, 111, 147-164, 1985.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 12
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature, 409, 860-921, 2001.
    • (2001) Nature , vol.409 , pp. 860-921
    • International Human Genome Sequencing Consortium1
  • 13
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys, A.J., Kauppi, L., and Neumann, R. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nature Gen., 29, 217-222, 2001.
    • (2001) Nature Gen , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 15
    • 0039528958 scopus 로고    scopus 로고
    • Reconstructing a history of recombinations from a set of sequences
    • Kececioglu, J. and Gusfield, D. Reconstructing a history of recombinations from a set of sequences. Disc. Appl. Math., 88, 239-260, 1998.
    • (1998) Disc. Appl. Math , vol.88 , pp. 239-260
    • Kececioglu, J.1    Gusfield, D.2
  • 16
    • 0015071350 scopus 로고
    • Theoretical foundations of population genetics at the molecular level
    • Kimura, M. Theoretical foundations of population genetics at the molecular level. Theoret. Pop. Biol., 2, 174-208, 1971.
    • (1971) Theoret. Pop. Biol , vol.2 , pp. 174-208
    • Kimura, M.1
  • 17
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Maynard Smith, J. Analyzing the mosaic structure of genes. J. Mol. Evol., 34, 126-129, 1992.
    • (1992) J. Mol. Evol , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 18
    • 0031897789 scopus 로고    scopus 로고
    • Detecting recombination from gene trees
    • Maynard Smith, J. and Smith, N.H. Detecting recombination from gene trees. Mol. Biol. Evol., 15, 590-599, 1998.
    • (1998) Mol. Biol. Evol , vol.15 , pp. 590-599
    • Maynard Smith, J.1    Smith, N.H.2
  • 21
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • USA
    • Posada, D., and Crandall, K.A. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. USA, 98, 13757-13762, 2001.
    • (2001) Proc. Natl. Acad. Sci , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 22
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer, S. Statistical tests for detecting gene conversion. Mol. Biol. Evol., 6, 526-536, 1989.
    • (1989) Mol. Biol. Evol , vol.6 , pp. 526-536
    • Sawyer, S.1
  • 24
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens, M., Smith, N.J., and Donnelly, P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Gen., 68, 978-989, 2001.
    • (2001) Am. J. Hum. Gen , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 25
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter, J.C., Adams, M.D., Myers, E.W., et al. The sequence of the human genome. Science, 291, 1304-1351, 2001.
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1    Adams, M.D.2    Myers, E.W.3
  • 26
    • 0034913468 scopus 로고    scopus 로고
    • Perfect phylogentic networks with recombination
    • Wang, L., Zhang, K., and Zhang, L. Perfect phylogentic networks with recombination. J. Comp. Biol., 8, 69-78, 2001.
    • (2001) J. Comp. Biol , vol.8 , pp. 69-78
    • Wang, L.1    Zhang, K.2    Zhang, L.3
  • 27
    • 0031892518 scopus 로고    scopus 로고
    • Phylogenetic profiles: A graphical method for detecting genetic recombinations in homologous sequences
    • Weiler, G. F. Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol. Biol. Evol., 15, 326-335, 1998.
    • (1998) Mol. Biol. Evol , vol.15 , pp. 326-335
    • Weiler, G.F.1
  • 28
    • 0034815265 scopus 로고    scopus 로고
    • A simulation study of the reliability of recombination detection methods
    • Wiuf, C., Christensen, T., and Hein, J. A simulation study of the reliability of recombination detection methods. Mol. Biol. Evol., 18,1929-1939, 2001.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 1929-1939
    • Wiuf, C.1    Christensen, T.2    Hein, J.3
  • 29
    • 0037188541 scopus 로고    scopus 로고
    • A dynamic programming algorithm for haplotype block partition
    • USA
    • Zhang, K., Deng, M., Chen, T., Waterman, M. S., and Sun, F. A dynamic programming algorithm for haplotype block partition. Proc. Natl. Acad. Sci. USA, 99, 7335-7339, 2002.
    • (2002) Proc. Natl. Acad. Sci , vol.99 , pp. 7335-7339
    • Zhang, K.1    Deng, M.2    Chen, T.3    Waterman, M.S.4    Sun, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.