Dissecting the taxonomic heterogeneity within propionibacterium acnes: Proposal for propionibacterium acnes subsp. Acnes subsp. Nov. And propionibacterium acnes subsp. Elongatum subsp. Nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 65, Issue 12, 2015, Pages 4776-4787

  Dekio, Itaru ^a,b,c   Culak, Renata ^a   Misra, Raju ^a   Gaulton, Tom ^a   Fang, Min ^a   Sakamoto, Mitsuo ^c   Ohkuma, Moriya ^c   Oshima, Kenshiro ^d   Hattori, Masahira ^d   Klenk, Hans Peter ^e   Rajendram, Dunstan ^a   Gharbia, Saheer E ^a   Shah, Haroun N ^a  

^a PUBLIC HEALTH ENGLAND   (United Kingdom)

^b TOKYO WOMEN'S MEDICAL UNIVERSITY   (Japan)

^c RIKEN BIORESOURCE CENTER   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

^e NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARYL ACYLAMIDASE; BIOLOGICAL MARKER; DNA TOPOISOMERASE (ATP HYDROLYSING) B; FATTY ACID; PYRUVIC ACID; RECA PROTEIN; RIBOSE; RIBOSOME PROTEIN; BACTERIAL DNA; BACTERIAL PROTEIN; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; CELL SHAPE; CONTROLLED STUDY; ELECTRON MICROSCOPY; GENE SEQUENCE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROPIONIBACTERIUM ACNES; PROPIONIBACTERIUM ACNES SUBSP ACNES; PROPIONIBACTERIUM ACNES SUBSP ELONGATUM; PROPIONIBACTERIUM FREUDENREICHII; PROTEIN EXPRESSION; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; TYPE STRAIN; BACTERIAL GENE; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; HUMAN; MASS SPECTROMETRY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; SKIN;

BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; FATTY ACIDS; GENES, BACTERIAL; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PROPIONIBACTERIUM ACNES; RIBOSOMAL PROTEINS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SKIN; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 84955514370     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.000648     Document Type: Article

References (30)

1. Albert, H. B., Lambert, P., Rollason, J., Sorensen, J. S., Worthington, T., Pedersen, M. B., Nørgaard, H. S., Vernallis, A., Busch, F. & other authors (2013). Does nuclear tissue infected with bacteria following disc herniations lead to Modic changes in the adjacent vertebrae? Eur Spine J 22, 690–696.
2. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248–254.
3. Carson, F. L. & Hladik, C. (2009). Histotechnology: a Self-Instructional Text, 3rd edn, p. 2 Hong Kong: American Society for Clinical Pathology Press.
4. Cohen, R. J., Shannon, B. A., McNeal, J. E., Shannon, T. & Garrett, K. L. (2005). Propionibacterium acnes associated with inflammation in radical prostatectomy specimens: a possible link to cancer evolution? J Urol 173, 1969–1974.
5. Dekio, I. (2012). Microorganisms and atopic dermatitis. In Atopic Dermatitis – Disease Etiology and Clinical Management, pp. 107–122 Edited by J. Esparza-Gordillo & I. Dekio. Rijeka, Croatia: InTech.
6. Dekio, I., Rajendram, D., Morita, E., Gharbia, S. & Shah, H. N. (2012). Genetic diversity of Propionibacterium acnes strains isolated from human skin in Japan and comparison with their distribution in Europe. J Med Microbiol 61, 622–630.
7. Dekio, I., Culak, R., Fang, M., Ball, G., Gharbia, S. & Shah, H. N. (2013). Correlation between phylogroups and intracellular proteomes of Propionibacterium acnes and differences in the protein expression profiles between anaerobically and aerobically grown cells. BioMed Res Int 2013, 151797.
8. Dessinioti, C. & Katsambas, A. D. (2010). The role of Propionibacterium acnes in acne pathogenesis: facts and controversies. Clin Dermatol 28, 2–7.
9. Dewhirst, F. E., Chen, T., Izard, J., Paster, B. J., Tanner, A. C. R., Yu, W.-H., Lakshmanan, A. & Wade, W. G. (2010). The human oral microbiome. J Bacteriol 192, 5002–5017.
10. Douglas, H. D. & Gunter, S. E. (1946). The taxonomic position of Corynebacterium acnes. J Bacteriol 52, 15–23.
11. Gilchrist, T. C. (1901). A bacteriological and microscopical study of over three hundred vesicular and pustular lesions of the skin, with a research upon the etiology of acne vulgaris. Johns Hopkins Hosp Rep 9, 409–430.
12. Grice, E. A., Kong, H. H., Conlan, S., Deming, C. B., Davis, J., Young, A. C., Bouffard, G. G., Blakesley, R. W., Murray, P. R. & other authors (2009). Topographical and temporal diversity of the human skin microbiome. Science 324, 1190–1192.
13. Higaki, S., Kitagawa, T., Kagoura, M., Morohashi, M. & Yamagishi, T. (2000). Correlation between Propionibacterium acnes biotypes, lipase activity and rash degree in acne patients. J Dermatol 27, 519–522.
14. Johnson, J. L. & Cummins, C. S. (1972). Cell wall composition and deoxyribonucleic acid similarities among the anaerobic coryneforms, classical propionibacteria, and strains of Arachnia propionica. J Bacteriol 109, 1047–1066.
15. Khot, P. D., Couturier, M. R., Wilson, A., Croft, A. & Fisher, M. A. (2012). Optimization of matrix-assisted laser desorption ionizationtime of flight mass spectrometry analysis for bacterial identification. J Clin Microbiol 50, 3845–3852.
16. Kishishita, M., Ushijima, T., Ozaki, Y. & Ito, Y. (1979). Biotyping of Propionibacterium acnes isolated from normal human facial skin. Appl Environ Microbiol 38, 585–589.
17. Kuykendall, L. D., Roy, M. A., O’Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358–361.
18. Lapage, S. P., Sneath, P. H. A., Lessel, E. F., Skerman, V. B. D., Seeliger, H. P. R. & Clark, W. A. (1992). International Code of Nomenclature of Bacteria (1990 revision). Bacteriological Code. Washington, DC: American Society for Microbiology.
19. McDowell, A., Valanne, S., Ramage, G., Tunney, M. M., Glenn, J. V., McLorinan, G. C., Bhatia, A., Maisonneuve, J. F., Lodes, M. & other authors (2005). Propionibacterium acnes types I and II represent phylogenetically distinct groups. J Clin Microbiol 43, 326–334.
20. McDowell, A., Perry, A. L., Lambert, P. A. & Patrick, S. (2008). A new phylogenetic group of Propionibacterium acnes. J Med Microbiol 57, 218–224.
21. Meier-Kolthoff, J. P., Auch, A. F., Klenk, H.-P. & Göker, M. (2013). Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14, 60.
22. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16, 584–586.
23. Nagy, E., Urbán, E., Becker, S., Kostrzewa, M., Vörös, A., Hunyadkürti, J. & Nagy, I. (2013). MALDI-TOF MS fingerprinting facilitates rapid discrimination of phylotypes I, II and III of Propionibacterium acnes. Anaerobe 20, 20–26.
24. Negi, M., Takemura, T., Guzman, J., Uchida, K., Furukawa, A., Suzuki, Y., Iida, T., Ishige, I., Minami, J. & other authors (2012). Localization of Propionibacterium acnes in granulomas supports a possible etiologic link between sarcoidosis and the bacterium. Mod Pathol 25, 1284–1297.
25. Rood, I. G., de Korte, D., Savelkoul, P. H. & Pettersson, A. (2011). Molecular relatedness of Propionibacterium species isolated from blood products and on the skin of blood donors. Transfusion 51, 2118–2124.
26. Sakamoto, M. & Ohkuma, M. (2013). Bacteroides reticulotermitis sp. Nov., isolated from the gut of a subterranean termite (Reticulitermes speratus). Int J Syst Evol Microbiol 63, 691–695.
27. Shah, H. N. & Collins, D. M. (1990). Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides. Int J Syst Bacteriol 40, 205–208.
28. Shah, H. N., Bowden, G. H., Hardie, J. M. & Williams, R. A. D. (1976). Comparison of the biochemical properties of Bacteroides melaninogenicus from human dental plaque and other sites. J Appl Bacteriol 41, 473–492.
29. Shah, H. N., Encheva, V., Schmid, O., Nasir, P., Culak, R. A., Ines, I., Chattaway, M. A., Keys, C. J., Jacinto, R. C. & other authors (2005). Surface enhanced laser desorption/ionization time of flight mass spectrometry (SELDI-TOF-MS): a potentially powerful tool for rapid characterisation of microorganisms. In Encyclopedia of Rapid Microbiological Methods, vol. 3, pp. 57–96 Edited by M. J. Miller. River Grove, IL: DHI Publishing.
30. Tunney, M. M., Patrick, S., Curran, M. D., Ramage, G., Hanna, D., Nixon, J. R., Gorman, S. P., Davis, R. I. & Anderson, N. (1999). Detection of prosthetic hip infection at revision arthroplasty by immunofluorescence microscopy and PCR amplification of the bacterial 16S rRNA gene. J Clin Microbiol 37, 3281–3290.