Correlation between phylogroups and intracellular proteomes of propionibacterium acnes and differences in the protein expression profiles between anaerobically and aerobically grown cells

BioMed Research International

Volumn 2013, Issue , 2013, Pages

  Dekio, Itaru ^a,b   Culak, Renata ^a   Fang, Min ^a   Ball, Graham ^b   Gharbia, Saheer ^a   Shah, Haroun N ^a  

^a PUBLIC HEALTH ENGLAND   (United Kingdom)

^b NOTTINGHAM TRENT UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIOXIDANT; BACTERIAL PROTEIN; DNA 5S; HU PROTEIN; PROTEOME; RIBONUCLEASE L; RIBOSOMAL PROTEIN L19; RIBOSOMAL PROTEIN L20; RIBOSOMAL PROTEIN L21; RIBOSOMAL PROTEIN L24; RIBOSOMAL PROTEIN L7; RIBOSOMAL PROTEIN S10; RIBOSOMAL PROTEIN S13; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; OXYGEN;

ARTICLE; BACTERIAL GROWTH; BACTERIUM CULTURE; GEL ELECTROPHORESIS; GENE SEQUENCE; GENETIC VARIABILITY; LIQUID CHROMATOGRAPHY; MICROENVIRONMENT; PHYLOGENETIC TREE; PROPIONIBACTERIUM ACNES; PROTEIN EXPRESSION; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; AEROBIC METABOLISM; ANAEROBIC GROWTH; CLASSIFICATION; COMPARATIVE STUDY; GENE EXPRESSION REGULATION; METABOLISM; PHYSIOLOGY;

AEROBIOSIS; ANAEROBIOSIS; BACTERIAL PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; OXYGEN; PROPIONIBACTERIUM ACNES; PROTEOME;

EID: 84880175304     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2013/151797     Document Type: Article

References (26)

1. Dekio I., Hayashi H., Sakamoto M., Kitahara M., Nishikawa T., Suematsu M., Benno Y., Detection of potentially novel bacterial components of the human skin microbiota using culture-independent molecular profiling. Journal of Medical Microbiology 2005 54 12 1231 1238 2-s2.0-28944444306 10.1099/jmm.0.46075-0
2. Grice E. A., Kong H. H., Conlan S., Deming C. B., Davis J., Young A. C., Bouffard G. G., Blakesley R. W., Murray P. R., Green E. D., Turner M. L., Segre J. A., Topographical and temporal diversity of the human skin microbiome. Science 2009 324 5931 1190 1192 2-s2.0-66349083859 10.1126/science.1171700
3. Dekio I., Esparza-Gordillo J., Dekio I., Microorganisms and atopic dermatitis. Atopic Dermatitis-Disease Etiology and Clinical Management 2012 Rijeka, Croatia InTech 107 122. http://www.intechopen.com/books/atopic- dermatitis-disease-etiology-and-clinical-management
4. Dessinioti C., Katsambas A. D., The role of Propionibacterium acnes in acne pathogenesis: facts and controversies. Clinics in Dermatology 2010 28 1 2 7 2-s2.0-71749099997 10.1016/j.clindermatol.2009.03.012
5. Cohen R. J., Shannon B. A., McNeal J. E., Shannon T., Garrett K. L., Propionibacterium acnes associated with inflammation in radical prostatectomy specimens: a possible link to cancer evolution? Journal of Urology 2005 173 6 1969 1974 2-s2.0-18744374912 10.1097/01.ju.0000158161.15277.78
6. Tunney M. M., Patrick S., Curran M. D., Ramage G., Hanna D., Nixon J. R., Gorman S. P., Davis R. I., Anderson N., Detection of prosthetic hip infection at revision arthroplasty by immunofluorescence microscopy and PCR amplification of the bacterial 16S rRNA gene. Journal of Clinical Microbiology 1999 37 10 3281 3290 2-s2.0-0032850946
7. Negi M., Takemura T., Guzman J., Uchida K., Furukawa A., Suzuki Y., Iida T., Ishige I., Minami J., Yamada T., Kawachi H., Costabel U., Eishi Y., Localization of Propionibacterium acnes in granulomas supports a possible etiologic link between sarcoidosis and the bacterium. Modern Pathology 2012 25 9 1284 1297 10.1038/modpathol.2012.80
8. McDowell A., Perry A. L., Lambert P. A., Patrick S., A new phylogenetic group of Propionibacterium acnes. Journal of Medical Microbiology 2008 57 2 218 224 2-s2.0-38949217396 10.1099/jmm.0.47489-0
9. Higaki S., Kitagawa T., Kagoura M., Morohashi M., Yamagishi T., Correlation between Propionibacterium acnes biotypes, lipase activity and rash degree in acne patients. Journal of Dermatology 2000 27 8 519 522 2-s2.0-0033818007
10. Lomholt H. B., Kilian M., Population genetic analysis of Propionibacterium acnes identifies a subpopulation and epidemic clones associated with acne. PLoS ONE 2010 5 8 2-s2.0-77957922599 10.1371/journal.pone. 0012277 e12277
11. McDowell A., Gao A., Barnard E., Fink C., Murray P. I., Dowson C. G., Nagy I., Lambert P. A., Patrick S., A novel multilocus sequence typing scheme for the opportunistic pathogen propionibacterium acnes and characterization of type I cell surfaceassociated antigens. Microbiology 2011 157 7 1990 2003 2-s2.0-79959986937 10.1099/mic.0.049676-0
12. McDowell A., Barnard E., Nagy I., An expanded multilocus sequence typing scheme for Propionibacterium acnes: investigation of "pathogenic" "commensal" and antibiotic resistant strains. PLoS ONE 2012 7 7 e41480 10.1371/journal.pone.0041480
13. Dekio I., Rajendram D., Morita E., Gharbia S., Shah H. N., Genetic diversity of Propionibacterium acnes strains isolated from human skin in Japan and comparison with their distribution in Europe. Journal of Medical Microbiology 2012 61 5 622 630 2-s2.0-84859830034 10.1099/jmm.0.040949-0
14. Shah H. N., Encheva V., Schmid O., Miller M. J., Surface enhanced laser desorption/ionization time of flight mass spectrometry (SELDI-TOF-MS): a potentially powerful tool for rapid characterisation of microorganisms. Encyclopedia of Rapid Microbiological Methods 2005 3 River Grove, Ill, USA DHI Publishing, LLC 57 96
15. Culak R. A., Fang M., Simon B. S., Dekio I., Rajakaruna L. K., Shah H. N., Changes in the matrix markedly enhance the resolution and accurate identification of human pathogens by MALDI-TOF MS. Journal of Analytical and Bioanalytical Techniques 2012 S2 article 2 10.4172/2155-9872.S2-002
16. Matharoo-Ball B., Ratcliffe L., Lancashire L., Ugurel S., Miles A. K., Weston D. J., Rees R., Schadendorf D., Ball G., Creaser C. S., Diagnostic biomarkers differentiating metastatic melanoma patients from healthy controls identified by an integrated MALDI-TOF mass spectrometry/bioinformatic approach. Proteomics-Clinical Applications 2007 1 6 605 620 2-s2.0-34548146655 10.1002/prca.200700022
17. Techanukul T., Pereira F., Lipka A., Suckling J., Wood S. L., Lewis P., Hassard S., Cass A. E. G., Nagy J. M., CE-based sample quality assessment prior to 2-D gel electrophoresis: towards the standardization of gel-based proteomics. Journal of Separation Science 2010 33 16 2536 2546 2-s2.0-77955862418 10.1002/jssc.200900819
18. Dahab A. A., Smith N. W., Marlin N., Determination of aristolochic acid I and II in traditional Chinese medicine by HPCE with label free intrinsic imaging. Chromatographia 2009 70 3-4 467 473 2-s2.0-69049111709 10.1365/s10337-009-1156-2
19. Misra R. V., Ahmod N. Z., Parker R., Fang M., Shah H., Gharbia S., Developing an integrated proteo-genomic approach for the characterisation of biomarkers for the identification of Bacillus anthracis. Journal of Microbiological Methods 2012 88 2 237 247 2-s2.0-84856380264 10.1016/j.mimet.2011.12.001
20. Bizzini A., Durussel C., Bille J., Greub G., Prod'hom G., Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory. Journal of Clinical Microbiology 2010 48 5 1549 1554 2-s2.0-77951275498 10.1128/JCM.01794-09
21. Welker M., Moore E. R. B., Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology. Systematic and Applied Microbiology 2011 34 1 2 11 2-s2.0-79951682259 10.1016/j.syapm.2010.11.013
22. Nagy E., Urbán E., Becker S., Kostrzewa M., Vörös A., Hunyadkürti J., Nagy I., MALDI-TOF MS fingerprinting facilitates rapid discrimination of phylotypes I, II and III of Propionibacterium acnes. Anaerobe 2013 20 20 26 10.1016/j.anaerobe.2013.01.007
23. Brzuszkiewicz E., Weiner J., Wollherr A., Thürmer A., Hüpeden J., Lomholt H. B., Kilian M., Gottschalk G., Daniel R., Mollenkopf H., Meyer T. F., Brüggemann H., Comparative genomics and transcriptomics of Propionibacterium acnes. PLoS ONE 2011 6 6 2-s2.0-79959618261 10.1371/journal.pone.0021581 e21581
24. Holland C., Mak T. N., Zimny-Arndt U., Schmid M., Meyer T. F., Jungblut P. R., Brüggemann H., Proteomic identification of secreted proteins of Propionibacterium acnes. BMC Microbiology 2010 10 article 230 2-s2.0-77955965926 10.1186/1471-2180-10-230
25. Brüggemann H., Insights in the pathogenic potential of Propionibacterium acnes from its complete genome. Seminars in Cutaneous Medicine and Surgery 2005 24 2 67 72 2-s2.0-23444436388 10.1016/j.sder.2005.03.001
26. Nakatsuji T., Tang D. C., Zhang L., Gallo R. L., Huang C. M., Propionibacterium acnes camp factor and host acid sphingomyelinase contribute to bacterial virulence: potential targets for inflammatory acne treatment. PLoS ONE 2011 6 4 2-s2.0-79954455303 10.1371/journal.pone.0014797 e14797