메뉴 건너뛰기




Volumn 39, Issue 4, 2016, Pages 908-917

An evaluation of new and established methods to determine T-DNA copy number and homozygosity in transgenic plants

Author keywords

DdPCR; Digital droplet PCR; QPCR; Segregation analysis; Selectable marker; Southern blot; TAIL PCR; Transformation

Indexed keywords

BIOASSAY; BIOLOGICAL ANALYSIS; BIOMARKER; BIOTRANSFORMATION; DNA; EXPERIMENTAL STUDY; GENE EXPRESSION; LABORATORY METHOD; POLYMERASE CHAIN REACTION; TRANSGENIC PLANT;

EID: 84955511045     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/pce.12693     Document Type: Article
Times cited : (72)

References (41)
  • 1
    • 84899756611 scopus 로고    scopus 로고
    • Comparison of a quantitative Real-Time PCR assay and droplet digital PCR for copy number analysis of the CCL4L genes
    • Bharuthram A., Paximadis M., Picton A. & Tiemessen C. (2014) Comparison of a quantitative Real-Time PCR assay and droplet digital PCR for copy number analysis of the CCL4L genes. Infection, Genetics and Evolution 25, 28-35.
    • (2014) Infection, Genetics and Evolution , vol.25 , pp. 28-35
    • Bharuthram, A.1    Paximadis, M.2    Picton, A.3    Tiemessen, C.4
  • 2
    • 8744317168 scopus 로고    scopus 로고
    • Use of real-time PCR for determining copy number and zygosity in transgenic plants
    • Bubner B. & Baldwin I.T. (2004) Use of real-time PCR for determining copy number and zygosity in transgenic plants. Plant Cell Reports 23, 263-271.
    • (2004) Plant Cell Reports , vol.23 , pp. 263-271
    • Bubner, B.1    Baldwin, I.T.2
  • 5
    • 33750103383 scopus 로고    scopus 로고
    • Nicotiana (Nicotiana tobaccum, Nicotiana benthamiana)
    • In ed Wang K., Humana Press Inc., Totowa.
    • Clemente T. (2006) Nicotiana (Nicotiana tobaccum, Nicotiana benthamiana). In Agrobacterium Protocols (ed Wang K.), pp. 143-154. Humana Press Inc., Totowa.
    • (2006) Agrobacterium Protocols , pp. 143-154
    • Clemente, T.1
  • 6
    • 70350680825 scopus 로고    scopus 로고
    • Soybean oil: genetic approaches for modification of functionality and total content
    • Clemente T.E. & Cahoon E.B. (2009) Soybean oil: genetic approaches for modification of functionality and total content. Plant Physiology 151, 1030-1040.
    • (2009) Plant Physiology , vol.151 , pp. 1030-1040
    • Clemente, T.E.1    Cahoon, E.B.2
  • 7
    • 0035091576 scopus 로고    scopus 로고
    • Comparative analysis of transgenic rice plants obtained by Agrobacterium-mediated transformation and particle bombardment
    • Dai S., Zheng P., Marmey P., Zhang S., Tian W., Chen S. & Fauquet C. (2001) Comparative analysis of transgenic rice plants obtained by Agrobacterium-mediated transformation and particle bombardment. Molecular Breeding 7, 25-33.
    • (2001) Molecular Breeding , vol.7 , pp. 25-33
    • Dai, S.1    Zheng, P.2    Marmey, P.3    Zhang, S.4    Tian, W.5    Chen, S.6    Fauquet, C.7
  • 9
    • 0026196888 scopus 로고
    • A quick method to estimate the T-DNA copy number in transgenic plants at an early stage after transformation, using inverse PCR
    • Does M.P., Dekker B.M.M., de Groot M.J.A. & Offringa R. (1991) A quick method to estimate the T-DNA copy number in transgenic plants at an early stage after transformation, using inverse PCR. Plant Molecular Biology 17, 151-153.
    • (1991) Plant Molecular Biology , vol.17 , pp. 151-153
    • Does, M.P.1    Dekker, B.M.M.2    de Groot, M.J.A.3    Offringa, R.4
  • 10
    • 0034112666 scopus 로고    scopus 로고
    • Linear transgene constructs lacking vector backbone sequences generate low-copy-number transgenic plants with simple integration patterns
    • Fu X., Duc L.T., Fontana S., Bong B.B., Tinjuangjun P., Sudhakar D. & Kohli A. (1999) Linear transgene constructs lacking vector backbone sequences generate low-copy-number transgenic plants with simple integration patterns. Transgenic Research 9, 11-19.
    • (1999) Transgenic Research , vol.9 , pp. 11-19
    • Fu, X.1    Duc, L.T.2    Fontana, S.3    Bong, B.B.4    Tinjuangjun, P.5    Sudhakar, D.6    Kohli, A.7
  • 11
    • 0037337257 scopus 로고    scopus 로고
    • Agrobacterium-mediated plant transformation: the biology behind the "gene-jockeying" tool
    • Gelvin S.B. (2003) Agrobacterium-mediated plant transformation: the biology behind the "gene-jockeying" tool. Microbiology and Molecular Biology Reviews 67, 16-37.
    • (2003) Microbiology and Molecular Biology Reviews , vol.67 , pp. 16-37
    • Gelvin, S.B.1
  • 13
    • 33847794634 scopus 로고    scopus 로고
    • Production of transgenic strawberries by temporary immersion bioreactor system and verification by TAIL-PCR
    • Hanhineva K.J. & Kärenlampi S.O. (2007) Production of transgenic strawberries by temporary immersion bioreactor system and verification by TAIL-PCR. BMC Biotechnology 7, 11.
    • (2007) BMC Biotechnology , vol.7 , pp. 11
    • Hanhineva, K.J.1    Kärenlampi, S.O.2
  • 14
    • 0033037138 scopus 로고    scopus 로고
    • The meta-analysis of response ratios in experimental ecology
    • Hedges L.V., Gurevitch J. & Curtis P.S. (1999) The meta-analysis of response ratios in experimental ecology. Ecology 80, 1150-1156.
    • (1999) Ecology , vol.80 , pp. 1150-1156
    • Hedges, L.V.1    Gurevitch, J.2    Curtis, P.S.3
  • 15
    • 41149130138 scopus 로고    scopus 로고
    • Using C4 photosynthesis to increase yield of rice - rationale and feasibility
    • Hibberd J.M., Sheehy J.E. & Langdale J.A. (2008) Using C4 photosynthesis to increase yield of rice - rationale and feasibility. Current Opinion in Plant Biology 11, 228-231.
    • (2008) Current Opinion in Plant Biology , vol.11 , pp. 228-231
    • Hibberd, J.M.1    Sheehy, J.E.2    Langdale, J.A.3
  • 16
    • 14744306436 scopus 로고
    • Simultaneous amplification and detection of specific dna sequences
    • Higuchi R., Dollinger G., Walsh S.P. & Griffith R. (1992) Simultaneous amplification and detection of specific dna sequences. Biotechnology 10, 413-417.
    • (1992) Biotechnology , vol.10 , pp. 413-417
    • Higuchi, R.1    Dollinger, G.2    Walsh, S.P.3    Griffith, R.4
  • 19
    • 34247217272 scopus 로고    scopus 로고
    • Real-time quantitative PCR as an alternative to southern blot or fluorescence in situ hybridization for detection of gene copy number changes
    • In eds Hilario E. & Mackay J., Humana Press Inc., Totowa.
    • Hoebeeck J., Speleman F. & Vandesompele J. (2007) Real-time quantitative PCR as an alternative to southern blot or fluorescence in situ hybridization for detection of gene copy number changes. In Protocols for Nucleic Acid Analysis by Nonradioactive Probes (eds Hilario E. & Mackay J.), pp. 205-226. Humana Press Inc., Totowa.
    • (2007) Protocols for Nucleic Acid Analysis by Nonradioactive Probes , pp. 205-226
    • Hoebeeck, J.1    Speleman, F.2    Vandesompele, J.3
  • 21
    • 0034953244 scopus 로고    scopus 로고
    • Quantitative real-time PCR assay for determining transgene copy number in transformed plants
    • Ingham D.J., Beer S., Money S. & Hansen G. (2001) Quantitative real-time PCR assay for determining transgene copy number in transformed plants. BioTechniques 31, 132-140.
    • (2001) BioTechniques , vol.31 , pp. 132-140
    • Ingham, D.J.1    Beer, S.2    Money, S.3    Hansen, G.4
  • 22
    • 0023193729 scopus 로고
    • T-DNA is organized predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives
    • Jorgensen R., Snyder C. & Jones J.D.G. (1987) T-DNA is organized predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives. Molecular Genomics and Genetics 207, 471-477.
    • (1987) Molecular Genomics and Genetics , vol.207 , pp. 471-477
    • Jorgensen, R.1    Snyder, C.2    Jones, J.D.G.3
  • 23
    • 0036235825 scopus 로고    scopus 로고
    • Two loci from Lycopersicon hirsutum LA407 confer resistance to strains of Clavibacter michiganensis subsp
    • Kabelka E., Franchino B. & Francis D. (2002) Two loci from Lycopersicon hirsutum LA407 confer resistance to strains of Clavibacter michiganensis subsp. Michiganensis. Phytopathology 9, 504-510.
    • (2002) Michiganensis. Phytopathology , vol.9 , pp. 504-510
    • Kabelka, E.1    Franchino, B.2    Francis, D.3
  • 24
    • 26444488564 scopus 로고    scopus 로고
    • What will it take to feed 5.0 billion rice consumers?
    • Khush G.S. (2005) What will it take to feed 5.0 billion rice consumers? Plant Molecular Biology 59, 1-6.
    • (2005) Plant Molecular Biology , vol.59 , pp. 1-6
    • Khush, G.S.1
  • 25
    • 0032954242 scopus 로고    scopus 로고
    • Transgene expression in rice engineered through particle bombardment: molecular factors controlling stable expression and transgene silencing
    • Kohli A., Gahakwa D., Vain P., Laurie D.A. & Christou P. (1999) Transgene expression in rice engineered through particle bombardment: molecular factors controlling stable expression and transgene silencing. Planta 208, 88-97.
    • (1999) Planta , vol.208 , pp. 88-97
    • Kohli, A.1    Gahakwa, D.2    Vain, P.3    Laurie, D.A.4    Christou, P.5
  • 26
    • 84939568845 scopus 로고    scopus 로고
    • The Brassica napus receptor-like protein RLM2 is encoded by a second allele of the LepR3/Rlm2 blackleg resistance locus
    • Larkan N.J., Ma L. & Borhan M.H. (2016) The Brassica napus receptor-like protein RLM2 is encoded by a second allele of the LepR3/Rlm2 blackleg resistance locus. Plant Biotechnology Journal 13, 983-992.
    • (2016) Plant Biotechnology Journal , vol.13 , pp. 983-992
    • Larkan, N.J.1    Ma, L.2    Borhan, M.H.3
  • 27
    • 0037072764 scopus 로고    scopus 로고
    • Molecular and global time-resolved analysis of a psbS gene dosage effect on pH- and xanthophyll cycle-dependent nonphotochemical quenching in photosystem II
    • Li X.P., Gilmore A.M. & Niyogi K.K. (2002) Molecular and global time-resolved analysis of a psbS gene dosage effect on pH- and xanthophyll cycle-dependent nonphotochemical quenching in photosystem II. Journal of Biological Chemistry 277, 33590-33597.
    • (2002) Journal of Biological Chemistry , vol.277 , pp. 33590-33597
    • Li, X.P.1    Gilmore, A.M.2    Niyogi, K.K.3
  • 28
    • 0029360727 scopus 로고
    • Efficient isolation and mapping of Arabidopsis T-DNA insert junctions by thermal asymmetric interlaced PCR
    • Liu Y.-G., Mitsukawa N., Oosumi T. & Whittier R.F. (1995) Efficient isolation and mapping of Arabidopsis T-DNA insert junctions by thermal asymmetric interlaced PCR. The Plant Journal 8, 457-463.
    • (1995) The Plant Journal , vol.8 , pp. 457-463
    • Liu, Y.-G.1    Mitsukawa, N.2    Oosumi, T.3    Whittier, R.F.4
  • 30
    • 84925879465 scopus 로고    scopus 로고
    • Meeting the global food demand of the future by engineering crop photosynthesis and yield potential
    • Long S.P., Marshall-Colon A. & Zhu X.-G. (2015) Meeting the global food demand of the future by engineering crop photosynthesis and yield potential. Cell 161, 56-66.
    • (2015) Cell , vol.161 , pp. 56-66
    • Long, S.P.1    Marshall-Colon, A.2    Zhu, X.-G.3
  • 32
    • 84876787400 scopus 로고    scopus 로고
    • Fast-tracking development of homozygous transgenic cereal lines using a simple and highly flexible real-time PCR assay
    • Mieog J.C., Howitt C.A. & Ral J.-P. (2013) Fast-tracking development of homozygous transgenic cereal lines using a simple and highly flexible real-time PCR assay. BMC Plant Biology 13, 71.
    • (2013) BMC Plant Biology , vol.13 , pp. 71
    • Mieog, J.C.1    Howitt, C.A.2    Ral, J.-P.3
  • 33
    • 0347089333 scopus 로고    scopus 로고
    • Selectable marker genes in transgenic plants: applications, alternatives and biosafety
    • Miki B. & McHugh S. (2004) Selectable marker genes in transgenic plants: applications, alternatives and biosafety. Journal of Biotechnology 107, 193-232.
    • (2004) Journal of Biotechnology , vol.107 , pp. 193-232
    • Miki, B.1    McHugh, S.2
  • 34
    • 46649088001 scopus 로고    scopus 로고
    • Integration site analysis in transgenic mice by thermal asymmetric interlaced (TAIL)-PCR: segregating multiple-integrant founder lines and determining zygosity
    • Pillai M.M., Venkataraman G.M., Kosak S. & Torok-Storb B. (2008) Integration site analysis in transgenic mice by thermal asymmetric interlaced (TAIL)-PCR: segregating multiple-integrant founder lines and determining zygosity. Transgenic Research 17, 749-754.
    • (2008) Transgenic Research , vol.17 , pp. 749-754
    • Pillai, M.M.1    Venkataraman, G.M.2    Kosak, S.3    Torok-Storb, B.4
  • 35
    • 84898991156 scopus 로고    scopus 로고
    • Synthetic biology approaches to engineering the nitrogen symbiosis in cereals
    • Rogers C. & Oldroyd G.E. (2014) Synthetic biology approaches to engineering the nitrogen symbiosis in cereals. Journal of Experimental Botany 65, 1939-1946.
    • (2014) Journal of Experimental Botany , vol.65 , pp. 1939-1946
    • Rogers, C.1    Oldroyd, G.E.2
  • 36
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • Southern E.M. (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. Journal of Molecular Biology 98, 503-517.
    • (1975) Journal of Molecular Biology , vol.98 , pp. 503-517
    • Southern, E.M.1
  • 40
    • 84921051387 scopus 로고    scopus 로고
    • Fast-tracking determination of homozygous transgenic lines and transgene stacking using a reliable quantitative real-time PCR assay
    • Wang X., Jiang D. & Yang D. (2015) Fast-tracking determination of homozygous transgenic lines and transgene stacking using a reliable quantitative real-time PCR assay. Applied Biochemistry and Biotechnology 175, 996-1006.
    • (2015) Applied Biochemistry and Biotechnology , vol.175 , pp. 996-1006
    • Wang, X.1    Jiang, D.2    Yang, D.3
  • 41
    • 84888138989 scopus 로고    scopus 로고
    • Pyramiding of Bt cry1Ia8 and cry1Ba3 genes into cabbage (Brassica oleracea L. var. capitata) confers effective control against diamondback moth
    • Yi D., Cui L., Wang L., Liu Y., Zhuang M., Zhang Y. & Yang L. (2013) Pyramiding of Bt cry1Ia8 and cry1Ba3 genes into cabbage (Brassica oleracea L. var. capitata) confers effective control against diamondback moth. Plant Cell Tissue and Organ Culture 115, 419-428.
    • (2013) Plant Cell Tissue and Organ Culture , vol.115 , pp. 419-428
    • Yi, D.1    Cui, L.2    Wang, L.3    Liu, Y.4    Zhuang, M.5    Zhang, Y.6    Yang, L.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.