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Volumn 16, Issue 1, 2016, Pages 17-28

Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)

Author keywords

Chum salmon; Haploid; Homeolog; Linkage mapping; Tetrasomic inheritance; Whole genome duplication

Indexed keywords

ANIMAL; CHROMOSOMAL MAPPING; CHROMOSOME; CLASSIFICATION; FEMALE; GENETIC VARIATION; GENETICS; GENOME; MALE; ONCORHYNCHUS KETA; TETRASOMY;

EID: 84955189470     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12394     Document Type: Article
Times cited : (54)

References (71)
  • 1
    • 85083597964 scopus 로고
    • Protein polymorphism and the rate of loss of duplicate gene expression.
    • Allendorf FW (1978) Protein polymorphism and the rate of loss of duplicate gene expression.
    • (1978)
    • Allendorf, F.W.1
  • 2
    • 0030972920 scopus 로고    scopus 로고
    • Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in rainbow trout
    • Allendorf FW, Danzmann RG (1997) Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in rainbow trout. Genetics, 145, 1083-1092.
    • (1997) Genetics , vol.145 , pp. 1083-1092
    • Allendorf, F.W.1    Danzmann, R.G.2
  • 4
    • 54449098752 scopus 로고    scopus 로고
    • Rapid SNP discovery and genetic mapping using sequenced RAD markers
    • Baird NA, Etter PD, Atwood TS, et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE, 3, e3376.
    • (2008) PLoS ONE , vol.3 , pp. e3376
    • Baird, N.A.1    Etter, P.D.2    Atwood, T.S.3
  • 5
    • 84899099281 scopus 로고    scopus 로고
    • The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
    • Berthelot C, Brunet F, Chalopin D et al. (2014) The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Nature Communications, 5, 3657.
    • (2014) Nature Communications , vol.5 , pp. 3657
    • Berthelot, C.1    Brunet, F.2    Chalopin, D.3
  • 6
    • 38149117037 scopus 로고    scopus 로고
    • Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
    • de Boer JG, Yazawa R, Davidson WS, Koop BF (2007) Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids. BMC Genomics, 8, 422.
    • (2007) BMC Genomics , vol.8 , pp. 422
    • de Boer, J.G.1    Yazawa, R.2    Davidson, W.S.3    Koop, B.F.4
  • 7
    • 84865335559 scopus 로고    scopus 로고
    • Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis
    • Brenna-Hansen S, Li J, Kent MP et al. (2012) Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis. BMC Genomics, 13, 432.
    • (2012) BMC Genomics , vol.13 , pp. 432
    • Brenna-Hansen, S.1    Li, J.2    Kent, M.P.3
  • 8
    • 84896922993 scopus 로고    scopus 로고
    • A dense linkage map for Chinook salmon (Oncorhynchus tshawytscha) reveals variable chromosomal divergence after an ancestral whole genome duplication event
    • Brieuc MS, Waters CD, Seeb JE, Naish KA (2014) A dense linkage map for Chinook salmon (Oncorhynchus tshawytscha) reveals variable chromosomal divergence after an ancestral whole genome duplication event. G3: Genes| Genomes| Genetics, 4, 447-460.
    • (2014) G3: Genes| Genomes| Genetics , vol.4 , pp. 447-460
    • Brieuc, M.S.1    Waters, C.D.2    Seeb, J.E.3    Naish, K.A.4
  • 10
    • 77957898047 scopus 로고    scopus 로고
    • Chromosomes, conflict, and epigenetics: chromosomal speciation revisited
    • Brown JD, O'Neill RJ (2010) Chromosomes, conflict, and epigenetics: chromosomal speciation revisited. Annual Review of Genomics and Human Genetics, 11, 291-316.
    • (2010) Annual Review of Genomics and Human Genetics , vol.11 , pp. 291-316
    • Brown, J.D.1    O'Neill, R.J.2
  • 11
    • 58349111875 scopus 로고    scopus 로고
    • AmiGO: online access to ontology and annotation data
    • Carbon S, Ireland A, Mungall CJ et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics, 25, 288-289.
    • (2009) Bioinformatics , vol.25 , pp. 288-289
    • Carbon, S.1    Ireland, A.2    Mungall, C.J.3
  • 12
    • 84914148322 scopus 로고    scopus 로고
    • The subtelomeric region is important for chromosome recognition and pairing during meiosis
    • del Carmen Calderón M, Rey M-D, Cabrera A, Prieto P (2014) The subtelomeric region is important for chromosome recognition and pairing during meiosis. Scientific Reports, 4, 6488.
    • (2014) Scientific Reports , vol.4 , pp. 6488
    • del Carmen Calderón, M.1    Rey, M.-D.2    Cabrera, A.3    Prieto, P.4
  • 14
    • 60349093708 scopus 로고    scopus 로고
    • Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation
    • Charlesworth B (2009) Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation. Nature Reviews Genetics, 10, 195-205.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 195-205
    • Charlesworth, B.1
  • 15
    • 79959435199 scopus 로고    scopus 로고
    • Genome-wide genetic marker discovery and genotyping using next-generation sequencing
    • Davey JW, Hohenlohe PA, Etter PD, et al. (2011) Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews Genetics, 12, 499-510.
    • (2011) Nature Reviews Genetics , vol.12 , pp. 499-510
    • Davey, J.W.1    Hohenlohe, P.A.2    Etter, P.D.3
  • 16
    • 77958150590 scopus 로고    scopus 로고
    • Sequencing the genome of the Atlantic salmon (Salmo salar)
    • Davidson WS, Koop BF, Jones SJ et al. (2010) Sequencing the genome of the Atlantic salmon (Salmo salar). Genome Biology, 11, 403.
    • (2010) Genome Biology , vol.11 , pp. 403
    • Davidson, W.S.1    Koop, B.F.2    Jones, S.J.3
  • 17
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • Dehal P, Boore JL (2005) Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biology, 3, e314.
    • (2005) PLoS Biology , vol.3 , pp. e314
    • Dehal, P.1    Boore, J.L.2
  • 18
    • 0002605644 scopus 로고    scopus 로고
    • Homing in Pacific salmon: mechanisms and ecological basis
    • Dittman A, Quinn T (1996) Homing in Pacific salmon: mechanisms and ecological basis. Journal of Experimental Biology, 199, 83-91.
    • (1996) Journal of Experimental Biology , vol.199 , pp. 83-91
    • Dittman, A.1    Quinn, T.2
  • 19
    • 84891557884 scopus 로고    scopus 로고
    • Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools
    • Dufresne F, Stift M, Vergilino R, Mable BK (2014) Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools. Molecular Ecology, 23, 40-69.
    • (2014) Molecular Ecology , vol.23 , pp. 40-69
    • Dufresne, F.1    Stift, M.2    Vergilino, R.3    Mable, B.K.4
  • 20
    • 35848959243 scopus 로고    scopus 로고
    • Thirty-eight single nucleotide polymorphism markers for high-throughput genotyping of chum salmon
    • Elfstrom CM, Smith CT, Seeb LW (2007) Thirty-eight single nucleotide polymorphism markers for high-throughput genotyping of chum salmon. Molecular Ecology Notes, 7, 1211-1215.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 1211-1215
    • Elfstrom, C.M.1    Smith, C.T.2    Seeb, L.W.3
  • 21
    • 84870297139 scopus 로고    scopus 로고
    • The genomic landscape of species divergence in Ficedula flycatchers
    • Ellegren H, Smeds L, Burri R et al. (2012) The genomic landscape of species divergence in Ficedula flycatchers. Nature, 491, 756-760.
    • (2012) Nature , vol.491 , pp. 756-760
    • Ellegren, H.1    Smeds, L.2    Burri, R.3
  • 22
    • 84857207047 scopus 로고    scopus 로고
    • SNP discovery and genotyping for evolutionary genetics using RAD sequencing
    • (eds Orgogozo V, Rockman MV) -. Humana Press, New York.
    • Etter P, Bassham S, Hohenlohe P, Johnson E, Cresko W (2011a) SNP discovery and genotyping for evolutionary genetics using RAD sequencing. In: Molecular Methods for Evolutionary Genetics (eds Orgogozo V, Rockman MV), pp. 157-178. Humana Press, New York.
    • (2011) Molecular Methods for Evolutionary Genetics , pp. 157-178
    • Etter, P.1    Bassham, S.2    Hohenlohe, P.3    Johnson, E.4    Cresko, W.5
  • 23
    • 79954584270 scopus 로고    scopus 로고
    • Local de novo assembly of RAD paired-end contigs using short sequencing reads
    • Etter PD, Preston JL, Bassham S, Cresko WA, Johnson EA (2011b) Local de novo assembly of RAD paired-end contigs using short sequencing reads. PLoS ONE, 6, e18561.
    • (2011) PLoS ONE , vol.6 , pp. e18561
    • Etter, P.D.1    Preston, J.L.2    Bassham, S.3    Cresko, W.A.4    Johnson, E.A.5
  • 24
    • 84897872674 scopus 로고    scopus 로고
    • Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing
    • Everett MV, Seeb JE (2014) Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing. Evolutionary Applications, 7, 480-492.
    • (2014) Evolutionary Applications , vol.7 , pp. 480-492
    • Everett, M.V.1    Seeb, J.E.2
  • 25
    • 84868534630 scopus 로고    scopus 로고
    • Presidential address. Transposable elements, epigenetics, and genome evolution
    • Fedoroff NV (2012) Presidential address. Transposable elements, epigenetics, and genome evolution. Science, 338, 758-767.
    • (2012) Science , vol.338 , pp. 758-767
    • Fedoroff, N.V.1
  • 26
    • 84860442706 scopus 로고    scopus 로고
    • Integration of two diploid potato linkage maps with the potato genome sequence
    • Felcher KJ, Coombs JJ, Massa AN et al. (2012) Integration of two diploid potato linkage maps with the potato genome sequence. PLoS ONE, 7, e36347.
    • (2012) PLoS ONE , vol.7 , pp. e36347
    • Felcher, K.J.1    Coombs, J.J.2    Massa, A.N.3
  • 27
    • 84884205417 scopus 로고    scopus 로고
    • The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing
    • Gagnaire PA, Pavey SA, Normandeau E, Bernatchez L (2013) The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing. Evolution, 67, 2483-2497.
    • (2013) Evolution , vol.67 , pp. 2483-2497
    • Gagnaire, P.A.1    Pavey, S.A.2    Normandeau, E.3    Bernatchez, L.4
  • 28
    • 0036920317 scopus 로고    scopus 로고
    • Detection rates for genotyping errors in SNPs using the trio design
    • Geller F, Ziegler A (2003) Detection rates for genotyping errors in SNPs using the trio design. Human Heredity, 54, 111-117.
    • (2003) Human Heredity , vol.54 , pp. 111-117
    • Geller, F.1    Ziegler, A.2
  • 30
    • 77649219524 scopus 로고    scopus 로고
    • Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    • Hohenlohe PA, Bassham S, Etter PD, et al. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genetics, 6, e1000862.
    • (2010) PLoS Genetics , vol.6 , pp. e1000862
    • Hohenlohe, P.A.1    Bassham, S.2    Etter, P.D.3
  • 31
    • 84878460644 scopus 로고    scopus 로고
    • Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing
    • Hohenlohe PA, Day MD, Amish SJ et al. (2013) Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing. Molecular Ecology, 22, 3002-3013.
    • (2013) Molecular Ecology , vol.22 , pp. 3002-3013
    • Hohenlohe, P.A.1    Day, M.D.2    Amish, S.J.3
  • 32
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: a DNA sequence assembly program
    • Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Research, 9, 868-877.
    • (1999) Genome Research , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 33
    • 7244259101 scopus 로고    scopus 로고
    • Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
    • Jaillon O, Aury J-M, Brunet F et al. (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature, 431, 946-957.
    • (2004) Nature , vol.431 , pp. 946-957
    • Jaillon, O.1    Aury, J.-M.2    Brunet, F.3
  • 34
    • 84878452722 scopus 로고    scopus 로고
    • Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes
    • Keller I, Wagner CE, Greuter L et al. (2013) Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes. Molecular Ecology, 22, 2848-2863.
    • (2013) Molecular Ecology , vol.22 , pp. 2848-2863
    • Keller, I.1    Wagner, C.E.2    Greuter, L.3
  • 35
    • 84907439758 scopus 로고    scopus 로고
    • Comparative mapping between Coho Salmon (Oncorhynchus kisutch) and three other salmonids suggests a role for chromosomal rearrangements in the retention of duplicated regions following a whole genome duplication event
    • Kodama M, Brieuc MS, Devlin RH, Hard JJ, Naish KA (2014) Comparative mapping between Coho Salmon (Oncorhynchus kisutch) and three other salmonids suggests a role for chromosomal rearrangements in the retention of duplicated regions following a whole genome duplication event. G3: Genes| Genomes| Genetics, 4, 1717-1730.
    • (2014) G3: Genes| Genomes| Genetics , vol.4 , pp. 1717-1730
    • Kodama, M.1    Brieuc, M.S.2    Devlin, R.H.3    Hard, J.J.4    Naish, K.A.5
  • 36
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi DD (1943) The estimation of map distances from recombination values. Annals of Eugenics, 12, 172-175.
    • (1943) Annals of Eugenics , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 37
    • 84897881322 scopus 로고    scopus 로고
    • Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)
    • Larson WA, Seeb LW, Everett MV et al. (2014) Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications, 7, 355-369.
    • (2014) Evolutionary Applications , vol.7 , pp. 355-369
    • Larson, W.A.1    Seeb, L.W.2    Everett, M.V.3
  • 38
    • 83655197149 scopus 로고    scopus 로고
    • A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns
    • Lien S, Gidskehaug L, Moen T et al. (2011) A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics, 12, 615.
    • (2011) BMC Genomics , vol.12 , pp. 615
    • Lien, S.1    Gidskehaug, L.2    Moen, T.3
  • 39
    • 84910679553 scopus 로고    scopus 로고
    • Temporally Isolated Lineages of Pink Salmon Reveal Unique Signatures of Selection on Distinct Pools of Standing Genetic Variation
    • Limborg MT, Waples RK, Seeb JE, Seeb LW (2014) Temporally Isolated Lineages of Pink Salmon Reveal Unique Signatures of Selection on Distinct Pools of Standing Genetic Variation. Journal of Heredity, 105, 741-751.
    • (2014) Journal of Heredity , vol.105 , pp. 741-751
    • Limborg, M.T.1    Waples, R.K.2    Seeb, J.E.3    Seeb, L.W.4
  • 40
    • 84900525383 scopus 로고    scopus 로고
    • A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification
    • Macqueen DJ, Johnston IA (2014) A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification. Proceedings. Biological Sciences, 281, 20132881.
    • (2014) Proceedings. Biological Sciences , vol.281 , pp. 20132881
    • Macqueen, D.J.1    Johnston, I.A.2
  • 41
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: a hub of integrated protein data
    • bar009
    • Magrane M, Consortium U (2011) UniProt Knowledgebase: a hub of integrated protein data. Database (Oxford), 2011, bar009.
    • (2011) Database (Oxford) , vol.2011
    • Magrane, M.1    Consortium, U.2
  • 42
    • 84870517015 scopus 로고    scopus 로고
    • Positionally biased gene loss after whole genome duplication: evidence from human, yeast, and plant
    • Makino T, McLysaght A (2012) Positionally biased gene loss after whole genome duplication: evidence from human, yeast, and plant. Genome Research, 22, 2427-2435.
    • (2012) Genome Research , vol.22 , pp. 2427-2435
    • Makino, T.1    McLysaght, A.2
  • 43
    • 84932109367 scopus 로고    scopus 로고
    • Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
    • Mastretta-Yanes A, Arrigo N, Alvarez N et al. (2015) Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference. Molecular Ecology Resources, 15, 28-41.
    • (2015) Molecular Ecology Resources , vol.15 , pp. 28-41
    • Mastretta-Yanes, A.1    Arrigo, N.2    Alvarez, N.3
  • 44
    • 0000963722 scopus 로고
    • Joint segregation of biochemical loci in Salmonidae: results from experiments with Salvelinus and review of the literature on other species
    • May B, Wright JE, Stoneking M (1979) Joint segregation of biochemical loci in Salmonidae: results from experiments with Salvelinus and review of the literature on other species. Journal of the Fisheries Board of Canada, 36, 1114-1128.
    • (1979) Journal of the Fisheries Board of Canada , vol.36 , pp. 1114-1128
    • May, B.1    Wright, J.E.2    Stoneking, M.3
  • 45
    • 84872599518 scopus 로고    scopus 로고
    • The effects of inheritance in tetraploids on genetic diversity and population divergence
    • Meirmans PG, Van Tienderen PH (2013) The effects of inheritance in tetraploids on genetic diversity and population divergence. Heredity, 110, 131-137.
    • (2013) Heredity , vol.110 , pp. 131-137
    • Meirmans, P.G.1    Van Tienderen, P.H.2
  • 46
    • 84855456602 scopus 로고    scopus 로고
    • A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
    • Miller MR, Brunelli JP, Wheeler PA et al. (2012) A conserved haplotype controls parallel adaptation in geographically distant salmonid populations. Molecular Ecology, 21, 237-249.
    • (2012) Molecular Ecology , vol.21 , pp. 237-249
    • Miller, M.R.1    Brunelli, J.P.2    Wheeler, P.A.3
  • 47
    • 0343698500 scopus 로고
    • Enormous diversity in genome sizes of fish as a reflection of natures extensive experiments with gene duplication
    • Ohno S (1970) Enormous diversity in genome sizes of fish as a reflection of natures extensive experiments with gene duplication. Transactions of the American Fisheries Society, 99, 120.
    • (1970) Transactions of the American Fisheries Society , vol.99 , pp. 120
    • Ohno, S.1
  • 49
    • 84898461075 scopus 로고    scopus 로고
    • A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids
    • Palti Y, Gao G, Miller MR et al. (2014) A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids. Molecular Ecology Resources, 14, 588-596.
    • (2014) Molecular Ecology Resources , vol.14 , pp. 588-596
    • Palti, Y.1    Gao, G.2    Miller, M.R.3
  • 51
    • 84888640528 scopus 로고    scopus 로고
    • Secondary contact and changes in coastal habitat availability influence the nonequilibrium population structure of a salmonid (Oncorhynchus keta)
    • Petrou EL, Hauser L, Waples RS et al. (2013) Secondary contact and changes in coastal habitat availability influence the nonequilibrium population structure of a salmonid (Oncorhynchus keta). Molecular Ecology, 22, 5848-5860.
    • (2013) Molecular Ecology , vol.22 , pp. 5848-5860
    • Petrou, E.L.1    Hauser, L.2    Waples, R.S.3
  • 52
    • 34247107207 scopus 로고    scopus 로고
    • Identification of the sex chromosome pair in chum salmon (Oncorhynchus keta) and pink salmon (Oncorhynchus gorbuscha)
    • Phillips RB, DeKoning J, Morasch MR, Park LK, Devlin RH (2007) Identification of the sex chromosome pair in chum salmon (Oncorhynchus keta) and pink salmon (Oncorhynchus gorbuscha). Cytogenetic and Genome Research, 116, 298-304.
    • (2007) Cytogenetic and Genome Research , vol.116 , pp. 298-304
    • Phillips, R.B.1    DeKoning, J.2    Morasch, M.R.3    Park, L.K.4    Devlin, R.H.5
  • 53
    • 62549122510 scopus 로고    scopus 로고
    • Human subtelomeric copy number variations
    • Riethman H (2008) Human subtelomeric copy number variations. Cytogenetic and Genome Research, 123, 244.
    • (2008) Cytogenetic and Genome Research , vol.123 , pp. 244
    • Riethman, H.1
  • 55
    • 84913272341 scopus 로고
    • A comparative study of the chromosomes in the chum salmon, the Kokanee salmon and their hybrids
    • Sasaki M, Hitotsumachi S, Makino S, Terao T (1968) A comparative study of the chromosomes in the chum salmon, the Kokanee salmon and their hybrids. Caryologia, 21, 389-394.
    • (1968) Caryologia , vol.21 , pp. 389-394
    • Sasaki, M.1    Hitotsumachi, S.2    Makino, S.3    Terao, T.4
  • 56
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH (2006) Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature, 440, 341-345.
    • (2006) Nature , vol.440 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 57
    • 0022805398 scopus 로고
    • Gene mapping of isozyme loci in chum salmon
    • Seeb JE, Seeb LW (1986) Gene mapping of isozyme loci in chum salmon. Journal of Heredity, 77, 399-402.
    • (1986) Journal of Heredity , vol.77 , pp. 399-402
    • Seeb, J.E.1    Seeb, L.W.2
  • 58
    • 79751513975 scopus 로고    scopus 로고
    • Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids
    • Seeb JE, Pascal CE, Grau ED et al. (2011) Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids. Molecular Ecology Resources, 11, 335-348.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 335-348
    • Seeb, J.E.1    Pascal, C.E.2    Grau, E.D.3
  • 59
    • 85083597926 scopus 로고    scopus 로고
    • repeatmasker open-3.0.
    • Smit A, Hubley R, Green P (2010) repeatmasker open-3.0. http://www.repeatmasker.org
    • (2010)
    • Smit, A.1    Hubley, R.2    Green, P.3
  • 61
    • 0033198094 scopus 로고    scopus 로고
    • Polyploidy: recurrent formation and genome evolution
    • Soltis DE, Soltis PS (1999) Polyploidy: recurrent formation and genome evolution. Trends in Ecology & Evolution, 14, 348-352.
    • (1999) Trends in Ecology & Evolution , vol.14 , pp. 348-352
    • Soltis, D.E.1    Soltis, P.S.2
  • 62
    • 0032987078 scopus 로고    scopus 로고
    • Inheritance of nuclear DNA markers in gynogenetic haploid pink salmon
    • Spruell P, Pilgrim KL, Greene BA et al. (1999) Inheritance of nuclear DNA markers in gynogenetic haploid pink salmon. Journal of Heredity, 90, 289-296.
    • (1999) Journal of Heredity , vol.90 , pp. 289-296
    • Spruell, P.1    Pilgrim, K.L.2    Greene, B.A.3
  • 63
    • 85083608802 scopus 로고    scopus 로고
    • fdrtool: Estimation and control of (local) false discovery rates.
    • Strimmer B (2013) fdrtool: Estimation and control of (local) false discovery rates.
    • (2013)
    • Strimmer, B.1
  • 64
    • 0000312931 scopus 로고
    • Gene-Centromere Mapping in Rainbow-Trout - High Interference over Long Map Distances
    • Thorgaard GH, Allendorf FW, Knudsen KL (1983) Gene-Centromere Mapping in Rainbow-Trout - High Interference over Long Map Distances. Genetics, 103, 771-783.
    • (1983) Genetics , vol.103 , pp. 771-783
    • Thorgaard, G.H.1    Allendorf, F.W.2    Knudsen, K.L.3
  • 65
    • 0345696596 scopus 로고
    • Association between quantitative traits and allozyme heterozygosity in a tetrasomic species: Dactylis glomerata
    • Tomekpe K, Lumaret R (1991) Association between quantitative traits and allozyme heterozygosity in a tetrasomic species: Dactylis glomerata. Evolution, 45, 359-370.
    • (1991) Evolution , vol.45 , pp. 359-370
    • Tomekpe, K.1    Lumaret, R.2
  • 66
    • 80053386792 scopus 로고    scopus 로고
    • The genome of the mesopolyploid crop species Brassica rapa
    • Wang X, Wang H, Wang J et al. (2011) The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics, 43, 1035-1039.
    • (2011) Nature Genetics , vol.43 , pp. 1035-1039
    • Wang, X.1    Wang, H.2    Wang, J.3
  • 67
    • 0020654883 scopus 로고
    • Meiotic models to explain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonid genomes
    • In: Isozymes: (eds Rattazzi MC, Scandalios JG, Whitt GS) -. Alan R. Liss, New York.
    • Wright JE, Johnson K, Hollister A, May B (1983) Meiotic models to explain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonid genomes. In: Isozymes: Current Topics in Bological and Medical Research (eds Rattazzi MC, Scandalios JG, Whitt GS), pp. 239-260. Alan R. Liss, New York.
    • (1983) Current Topics in Bological and Medical Research , pp. 239-260
    • Wright, J.E.1    Johnson, K.2    Hollister, A.3    May, B.4
  • 68
    • 4544271944 scopus 로고    scopus 로고
    • A mixed polyploid model for linkage analysis in outcrossing tetraploids using a pseudo-test backcross design
    • Wu R, Ma CX, Casella G (2004) A mixed polyploid model for linkage analysis in outcrossing tetraploids using a pseudo-test backcross design. Journal of Computational Biology, 11, 562-580.
    • (2004) Journal of Computational Biology , vol.11 , pp. 562-580
    • Wu, R.1    Ma, C.X.2    Casella, G.3
  • 69
    • 55449100528 scopus 로고    scopus 로고
    • Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph
    • Wu Y, Bhat PR, Close TJ, Lonardi S (2008) Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph. PLoS Genetics, 4, e1000212.
    • (2008) PLoS Genetics , vol.4 , pp. e1000212
    • Wu, Y.1    Bhat, P.R.2    Close, T.J.3    Lonardi, S.4
  • 70
    • 0031934873 scopus 로고    scopus 로고
    • A detailed linkage map of rainbow trout produced using doubled haploids
    • Young WP, Wheeler PA, Coryell VH, Keim P, Thorgaard GH (1998) A detailed linkage map of rainbow trout produced using doubled haploids. Genetics, 148, 839-850.
    • (1998) Genetics , vol.148 , pp. 839-850
    • Young, W.P.1    Wheeler, P.A.2    Coryell, V.H.3    Keim, P.4    Thorgaard, G.H.5
  • 71
    • 84873298727 scopus 로고    scopus 로고
    • Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information
    • Zhao L, Yuanda L, Caiping C et al. (2012) Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information. BMC Genomics, 13, 539.
    • (2012) BMC Genomics , vol.13 , pp. 539
    • Zhao, L.1    Yuanda, L.2    Caiping, C.3


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