메뉴 건너뛰기




Volumn 14, Issue 1, 2016, Pages 177-185

A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.)

(17)  Webb, Anne a   Cottage, Amanda a   Wood, Thomas a   Khamassi, Khalil a,i   Hobbs, Douglas a   Gostkiewicz, Krystyna a   White, Mark b   Khazaei, Hamid c,i   Ali, Mohamed d,j   Street, Daniel e   Duc, Gérard f   Stoddard, Fred L c   Maalouf, Fouad g   Ogbonnaya, Francis C g,k   Link, Wolfgang d   Thomas, Jane a   O'Sullivan, Donal M a,h  

g ICARDA *  (Lebanon)

Author keywords

Faba bean; KASP genotyping; Legume; Single nucleotide polymorphism; Synteny

Indexed keywords

TANNIN DERIVATIVE; TRANSCRIPTOME;

EID: 84955171000     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12371     Document Type: Article
Times cited : (96)

References (56)
  • 1
    • 84955196324 scopus 로고    scopus 로고
    • 454 Sequencing System Software
    • A Roche Company, Branford, CT 06405, USA
    • Anonymous (2010) 454 Sequencing System Software. 454 Life Sciences Corp., A Roche Company, Branford, CT 06405, USA. http://454.com/products/analysis-software/index.asp.
    • (2010) 454 Life Sciences Corp
  • 2
    • 0042206747 scopus 로고    scopus 로고
    • Identification of RAPD markers linked to the Uvf-1 gene conferring hypersensitive resistance against rust (Uromyces viciae-fabae) in Vicia faba L
    • Avila, C.M., Sillero, J.C., Rubiales, D., Moreno, M.T. and Torres, A.M. (2003) Identification of RAPD markers linked to the Uvf-1 gene conferring hypersensitive resistance against rust (Uromyces viciae-fabae) in Vicia faba L. Theor. Appl. Genet. 107, 353-358.
    • (2003) Theor. Appl. Genet. , vol.107 , pp. 353-358
    • Avila, C.M.1    Sillero, J.C.2    Rubiales, D.3    Moreno, M.T.4    Torres, A.M.5
  • 3
    • 2142674338 scopus 로고    scopus 로고
    • Isolate and organ-specific QTLs for ascochyta blight resistance in faba bean (Vicia faba L)
    • Avila, C.M., Satovic, Z., Sillero, J.C., Rubiales, D., Moreno, M.T. and Torres, A.M. (2004) Isolate and organ-specific QTLs for ascochyta blight resistance in faba bean (Vicia faba L). Theor. Appl. Genet. 108, 1071-1078.
    • (2004) Theor. Appl. Genet. , vol.108 , pp. 1071-1078
    • Avila, C.M.1    Satovic, Z.2    Sillero, J.C.3    Rubiales, D.4    Moreno, M.T.5    Torres, A.M.6
  • 4
    • 35948958273 scopus 로고    scopus 로고
    • Development of a new diagnostic marker for growth habit selection in faba bean (Vicia faba L.) breeding
    • Avila, C., Atienza, S., Moreno, M. and Torres, A. (2007) Development of a new diagnostic marker for growth habit selection in faba bean (Vicia faba L.) breeding. Theor. Appl. Genet. 115, 1075-1082.
    • (2007) Theor. Appl. Genet. , vol.115 , pp. 1075-1082
    • Avila, C.1    Atienza, S.2    Moreno, M.3    Torres, A.4
  • 6
    • 0344336434 scopus 로고
    • In vitro digestibility of the testa in tannin-free field beans (Vicia faba L)
    • Bond, D.A. (1976) In vitro digestibility of the testa in tannin-free field beans (Vicia faba L). J. Agric. Sci. 86, 561-566.
    • (1976) J. Agric. Sci. , vol.86 , pp. 561-566
    • Bond, D.A.1
  • 7
    • 84974403724 scopus 로고
    • Genetics of tannin content and its relationship with flower and testa colours in Vicia faba L
    • Cabrera, A. and Martin, A. (1989) Genetics of tannin content and its relationship with flower and testa colours in Vicia faba L. J. Agric. Sci. 113, 93-98.
    • (1989) J. Agric. Sci. , vol.113 , pp. 93-98
    • Cabrera, A.1    Martin, A.2
  • 9
    • 80054787802 scopus 로고    scopus 로고
    • SNP marker diversity in common bean (Phaseolus vulgaris L.)
    • Cortés, A., Chavarro, M. and Blair, M. (2011) SNP marker diversity in common bean (Phaseolus vulgaris L.). Theor. Appl. Genet. 123, 827-845.
    • (2011) Theor. Appl. Genet. , vol.123 , pp. 827-845
    • Cortés, A.1    Chavarro, M.2    Blair, M.3
  • 10
    • 84869501809 scopus 로고    scopus 로고
    • Heterozygosity and diversity analysis using mapped single nucleotide polymorphisms in a faba bean inbreeding programme
    • Cottage, A., Gostkiewicz, K., Thomas, J., Borrows, R., Torres, A.M. and O'Sullivan, D. (2012) Heterozygosity and diversity analysis using mapped single nucleotide polymorphisms in a faba bean inbreeding programme. Mol. Breeding, 30, 1799-1809.
    • (2012) Mol. Breeding , vol.30 , pp. 1799-1809
    • Cottage, A.1    Gostkiewicz, K.2    Thomas, J.3    Borrows, R.4    Torres, A.M.5    O'Sullivan, D.6
  • 11
    • 84869091961 scopus 로고    scopus 로고
    • Comparative genomics to bridge Vicia faba with model and closely-related legume species: stability of QTLs for flowering and yield-related traits
    • Cruz-Izquierdo, S., Avila, C.M., Satovic, Z., Palomino, C., Gutierrez, N., Ellwood, S.R., Phan, H.T., Cubero, J.I. and Torres, A.M. (2012) Comparative genomics to bridge Vicia faba with model and closely-related legume species: stability of QTLs for flowering and yield-related traits. Theor. Appl. Genet. 125, 1767-1782.
    • (2012) Theor. Appl. Genet. , vol.125 , pp. 1767-1782
    • Cruz-Izquierdo, S.1    Avila, C.M.2    Satovic, Z.3    Palomino, C.4    Gutierrez, N.5    Ellwood, S.R.6    Phan, H.T.7    Cubero, J.I.8    Torres, A.M.9
  • 12
    • 0009837717 scopus 로고
    • On the evolution of Vicia faba L
    • Cubero, J.I. (1974) On the evolution of Vicia faba L. Theor. Appl. Genet. 45, 47-51.
    • (1974) Theor. Appl. Genet. , vol.45 , pp. 47-51
    • Cubero, J.I.1
  • 14
    • 77950122188 scopus 로고    scopus 로고
    • Validation of QTLs for Orobanche crenata resistance in faba bean (Vicia faba L.) across environments and generations
    • Diaz-Ruiz, R., Torres, A.M., Satovic, Z., Gutierrez, M.V., Cubero, J.I. and Roman, B. (2010) Validation of QTLs for Orobanche crenata resistance in faba bean (Vicia faba L.) across environments and generations. Theor. Appl. Genet. 120, 909-919.
    • (2010) Theor. Appl. Genet. , vol.120 , pp. 909-919
    • Diaz-Ruiz, R.1    Torres, A.M.2    Satovic, Z.3    Gutierrez, M.V.4    Cubero, J.I.5    Roman, B.6
  • 16
    • 51549120976 scopus 로고    scopus 로고
    • Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris
    • Ellwood, S., Phan, H., Jordan, M., Hane, J., Torres, A., Avila, C., Cruz-Izquierdo, S. and Oliver, R. (2008) Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris. BMC Genet. 9, 380.
    • (2008) BMC Genet. , vol.9 , pp. 380
    • Ellwood, S.1    Phan, H.2    Jordan, M.3    Hane, J.4    Torres, A.5    Avila, C.6    Cruz-Izquierdo, S.7    Oliver, R.8
  • 18
    • 84955215403 scopus 로고    scopus 로고
    • FAOSTAT. Food and agriculture organisation of the United Nationss
    • FAO (2014) FAOSTAT. Food and agriculture organisation of the United Nations http://faostat.fao.org/faostat.
    • (2014)
  • 19
    • 51249166384 scopus 로고
    • Microprep protocol for extraction of DNA from tomato and other herbaceous plants
    • Fulton, T.M., Chunwongse, J. and Tanksley, S.D. (1995) Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Mol. Biol. Rep. 13, 207-209.
    • (1995) Plant Mol. Biol. Rep. , vol.13 , pp. 207-209
    • Fulton, T.M.1    Chunwongse, J.2    Tanksley, S.D.3
  • 20
    • 84939261126 scopus 로고    scopus 로고
    • Using genic sequence capture in combination with a syntenic pseudo genome to map a deletion mutant in a wheat species
    • Gardiner, L.-J., Gawroński, P., Olohan, L., Schnurbusch, T., Hall, N. and Hall, A. (2014) Using genic sequence capture in combination with a syntenic pseudo genome to map a deletion mutant in a wheat species. Plant J. 80, 895-904.
    • (2014) Plant J. , vol.80 , pp. 895-904
    • Gardiner, L.-J.1    Gawroński, P.2    Olohan, L.3    Schnurbusch, T.4    Hall, N.5    Hall, A.6
  • 21
    • 84869499007 scopus 로고    scopus 로고
    • Generation and characterization of 11 novel EST derived microsatellites from Vicia faba (Fabaceae)
    • Gong, Y.-M., Xu, S.-C., Mao, W.-H., Hu, Q.-Z., Zhang, G.-W., Ding, J. and Li, Z.-Y. (2011) Generation and characterization of 11 novel EST derived microsatellites from Vicia faba (Fabaceae). Am. J. Bot. 98, e22-e24.
    • (2011) Am. J. Bot. , vol.98 , pp. e22-e24
    • Gong, Y.-M.1    Xu, S.-C.2    Mao, W.-H.3    Hu, Q.-Z.4    Zhang, G.-W.5    Ding, J.6    Li, Z.-Y.7
  • 22
    • 33751214189 scopus 로고    scopus 로고
    • CAPs markers to assist selection for low vicine and convicine contents in faba bean (Vicia faba L.)
    • Gutierrez, N., Avila, C.M., Duc, G., Marget, P., Suso, M.J., Moreno, M.T. and Torres, A.M. (2006) CAPs markers to assist selection for low vicine and convicine contents in faba bean (Vicia faba L.). Theor. Appl. Genet. 114, 59-66.
    • (2006) Theor. Appl. Genet. , vol.114 , pp. 59-66
    • Gutierrez, N.1    Avila, C.M.2    Duc, G.3    Marget, P.4    Suso, M.J.5    Moreno, M.T.6    Torres, A.M.7
  • 23
    • 33947327706 scopus 로고    scopus 로고
    • Development of SCAR markers linked to a gene controlling absence of tannins in faba bean
    • Gutierrez, N., Avila, C., Rodriguez-Suarez, C., Moreno, M. and Torres, A. (2007) Development of SCAR markers linked to a gene controlling absence of tannins in faba bean. Mol. Breeding, 19, 305-314.
    • (2007) Mol. Breeding , vol.19 , pp. 305-314
    • Gutierrez, N.1    Avila, C.2    Rodriguez-Suarez, C.3    Moreno, M.4    Torres, A.5
  • 28
    • 84890881437 scopus 로고    scopus 로고
    • SNP discovery and high-density genetic mapping in faba bean (Vicia faba L.) permits identification of QTLs for ascochyta blight resistance
    • Kaur, S., Kimber, R.B.E., Cogan, N.O.I., Materne, M., Forster, J.W. and Paull, J.G. (2014a) SNP discovery and high-density genetic mapping in faba bean (Vicia faba L.) permits identification of QTLs for ascochyta blight resistance. Plant Sci. 217-218, 47-55.
    • (2014) Plant Sci. , vol.217-218 , pp. 47-55
    • Kaur, S.1    Kimber, R.B.E.2    Cogan, N.O.I.3    Materne, M.4    Forster, J.W.5    Paull, J.G.6
  • 29
    • 84896994389 scopus 로고    scopus 로고
    • Assessment of genetic diversity in faba bean based on single nucleotide polymorphism
    • Kaur, S., Cogan, N., Forster, J. and Paull, J. (2014b) Assessment of genetic diversity in faba bean based on single nucleotide polymorphism. Diversity, 6, 88-101.
    • (2014) Diversity , vol.6 , pp. 88-101
    • Kaur, S.1    Cogan, N.2    Forster, J.3    Paull, J.4
  • 31
    • 84919928198 scopus 로고    scopus 로고
    • Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.)
    • Khazaei, H., O'Sullivan D, M., Sillanpää, M.J. and Stoddard, F. (2014) Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.). Theor. Appl. Genet. 127, 2371-2385.
    • (2014) Theor. Appl. Genet. , vol.127 , pp. 2371-2385
    • Khazaei, H.1    O'Sullivan, D.M.2    Sillanpää, M.J.3    Stoddard, F.4
  • 33
    • 84939895286 scopus 로고    scopus 로고
    • Genetic analysis reveals a novel locus in Vicia faba decoupling pigmentation in the flower from that in the extra-floral nectaries
    • Khazaei, H., O'Sullivan, D.M., Sillanpää, M. and Stoddard, F.L. (2014b) Genetic analysis reveals a novel locus in Vicia faba decoupling pigmentation in the flower from that in the extra-floral nectaries. Mol. Breeding, 34, 1507-1513.
    • (2014) Mol. Breeding , vol.34 , pp. 1507-1513
    • Khazaei, H.1    O'Sullivan, D.M.2    Sillanpää, M.3    Stoddard, F.L.4
  • 34
    • 73749087549 scopus 로고    scopus 로고
    • Ecological services of faba bean
    • Köpke, U. and Nemecek, T. (2010) Ecological services of faba bean. Field. Crop. Res. 115, 217-233.
    • (2010) Field. Crop. Res. , vol.115 , pp. 217-233
    • Köpke, U.1    Nemecek, T.2
  • 35
    • 84865409707 scopus 로고    scopus 로고
    • MapDisto: fast and efficient computation of genetic linkage maps
    • Lorieux, M. (2012) MapDisto: fast and efficient computation of genetic linkage maps. Mol. Breeding, 30, 1231-1235.
    • (2012) Mol. Breeding , vol.30 , pp. 1231-1235
    • Lorieux, M.1
  • 36
    • 79851472498 scopus 로고    scopus 로고
    • Development and characterization of 21 EST-derived microsatellite markers in Vicia faba (fava bean)
    • Ma, Y., Yang, T., Guan, J., Wang, S., Wang, H., Sun, X. and Zong, X. (2011) Development and characterization of 21 EST-derived microsatellite markers in Vicia faba (fava bean). Am. J. Bot. 98, e22-e24.
    • (2011) Am. J. Bot. , vol.98 , pp. e22-e24
    • Ma, Y.1    Yang, T.2    Guan, J.3    Wang, S.4    Wang, H.5    Sun, X.6    Zong, X.7
  • 37
    • 84955216534 scopus 로고    scopus 로고
    • Summary review of faba bean research in the Nile Valley
    • Red Sea and sub-Saharan region, and future recommendations: ICARDA.
    • Maalouf, F., Hamdi, A., Cubero, J.I., Khalifa, G.E., Jarsso, M., Kemal, S. and Karajeh, F. (2009) Summary review of faba bean research in the Nile Valley, Red Sea and sub-Saharan region, and future recommendations: ICARDA.
    • (2009)
    • Maalouf, F.1    Hamdi, A.2    Cubero, J.I.3    Khalifa, G.E.4    Jarsso, M.5    Kemal, S.6    Karajeh, F.7
  • 39
    • 84955191226 scopus 로고    scopus 로고
    • The Vicia Toolbox
    • O'Sullivan, D.M. and Green, S. (2012) The Vicia Toolbox. www.viciatoolbox.org.
    • (2012)
    • O'Sullivan, D.M.1    Green, S.2
  • 41
    • 0342959968 scopus 로고
    • Aperu sur l'heredite du caractere absence de tannins dans les graines de feverole (Vicia faba L)
    • Picard, J. (1976) Aperu sur l'heredite du caractere absence de tannins dans les graines de feverole (Vicia faba L). Annales de l'Amelioration des Plantes, 26, 101-106.
    • (1976) Annales de l'Amelioration des Plantes , vol.26 , pp. 101-106
    • Picard, J.1
  • 42
    • 79959812762 scopus 로고    scopus 로고
    • The Jasmonate-ZIM-domain proteins interact with the WD-repeat/bHLH/MYB complexes to regulate jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana
    • Qi, T., Song, S., Ren, Q., Wu, D., Huang, H., Chen, Y., Fan, M., Peng, W., Ren, C. and Xie, D. (2011) The Jasmonate-ZIM-domain proteins interact with the WD-repeat/bHLH/MYB complexes to regulate jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana. Plant Cell, 23, 1795-1814.
    • (2011) Plant Cell , vol.23 , pp. 1795-1814
    • Qi, T.1    Song, S.2    Ren, Q.3    Wu, D.4    Huang, H.5    Chen, Y.6    Fan, M.7    Peng, W.8    Ren, C.9    Xie, D.10
  • 43
    • 84055165892 scopus 로고    scopus 로고
    • A genomic approach to nutritional, pharmacological and genetic issues of faba bean (Vicia faba): prospects for genetic modifications
    • Ray, H. and Georges, F. (2010) A genomic approach to nutritional, pharmacological and genetic issues of faba bean (Vicia faba): prospects for genetic modifications. GM Crops, 2010, 99-106.
    • (2010) GM Crops , vol.2010 , pp. 99-106
    • Ray, H.1    Georges, F.2
  • 44
    • 84893538719 scopus 로고    scopus 로고
    • Anchoring of genetic linkage maps to the chromosome complement of Vicia faba L
    • Ruiz-Rodriguez, M.D., Avila, C.M., Torres, A.M., Fuchs, J. and Schubert, I. (2014) Anchoring of genetic linkage maps to the chromosome complement of Vicia faba L. Mol. Breeding, 33, 743-748.
    • (2014) Mol. Breeding , vol.33 , pp. 743-748
    • Ruiz-Rodriguez, M.D.1    Avila, C.M.2    Torres, A.M.3    Fuchs, J.4    Schubert, I.5
  • 45
    • 0036144105 scopus 로고    scopus 로고
    • A-thaliana TRANSPARENT TESTA 1 is involved in seed coat development and defines the WIP subfamily of plant zinc finger proteins
    • Sagasser, M., Lu, G.H., Hahlbrock, K. and Weisshaar, B. (2002) A-thaliana TRANSPARENT TESTA 1 is involved in seed coat development and defines the WIP subfamily of plant zinc finger proteins. Genes Dev. 16, 138-149.
    • (2002) Genes Dev. , vol.16 , pp. 138-149
    • Sagasser, M.1    Lu, G.H.2    Hahlbrock, K.3    Weisshaar, B.4
  • 46
    • 84933684751 scopus 로고    scopus 로고
    • Detailed genetic approach to improve frost tolerance of German winter faba beans
    • PhD thesis, Göttingen: Georg-August Universität
    • Sallam, A. (2014) Detailed genetic approach to improve frost tolerance of German winter faba beans. PhD thesis, Göttingen: Georg-August Universität.
    • (2014)
    • Sallam, A.1
  • 49
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: Software for the graphical presentation of linkage maps and QTLs
    • Voorrips, R.E. (2002) MapChart: Software for the graphical presentation of linkage maps and QTLs. J. Hered. 93, 77-78.
    • (2002) J. Hered. , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 50
    • 0033165574 scopus 로고    scopus 로고
    • The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in arabidopsis, encodes a WD40 repeat protein
    • Walker, A.R., Davison, P.A., Bolognesi-Winfield, A.C., James, C.M., Srinivasan, N., Blundell, T.L., Esch, J.J., Marks, M.D. and Gray, J.C. (1999) The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in arabidopsis, encodes a WD40 repeat protein. Plant Cell, 11, 1337-1349.
    • (1999) Plant Cell , vol.11 , pp. 1337-1349
    • Walker, A.R.1    Davison, P.A.2    Bolognesi-Winfield, A.C.3    James, C.M.4    Srinivasan, N.5    Blundell, T.L.6    Esch, J.J.7    Marks, M.D.8    Gray, J.C.9
  • 51
    • 84863361407 scopus 로고    scopus 로고
    • Development and characterization of 20 novel polymorphic STS markers in Vicia faba (fava bean)
    • Wang, H., Yang, T., Guan, J., Ma, Y., Sun, X. and Zong, X. (2011) Development and characterization of 20 novel polymorphic STS markers in Vicia faba (fava bean). Am. J. Bot. 98, e189-e191.
    • (2011) Am. J. Bot. , vol.98 , pp. e189-e191
    • Wang, H.1    Yang, T.2    Guan, J.3    Ma, Y.4    Sun, X.5    Zong, X.6
  • 53
    • 79551671756 scopus 로고    scopus 로고
    • Accurate construction of consensus genetic maps via integer linear programming
    • Wu, Y., Close, T.J. and Lonardi, S. (2011) Accurate construction of consensus genetic maps via integer linear programming. IEEE/ACM Trans. Comput. Biol. Bioinform. 8, 381-394.
    • (2011) IEEE/ACM Trans. Comput. Biol. Bioinform. , vol.8 , pp. 381-394
    • Wu, Y.1    Close, T.J.2    Lonardi, S.3
  • 55
    • 63849186268 scopus 로고    scopus 로고
    • Simple sequence repeats (SSRs) in faba bean: new loci from Orobanche-resistant cultivar 'Giza 402'
    • Zeid, M., Mitchell, S., Link, W., Carter, M., Nawar, A., Fulton, T. and Kresovich, S. (2009) Simple sequence repeats (SSRs) in faba bean: new loci from Orobanche-resistant cultivar 'Giza 402'. Plant Breeding, 128, 149-155.
    • (2009) Plant Breeding , vol.128 , pp. 149-155
    • Zeid, M.1    Mitchell, S.2    Link, W.3    Carter, M.4    Nawar, A.5    Fulton, T.6    Kresovich, S.7
  • 56
    • 46749110463 scopus 로고    scopus 로고
    • The TTG1-bHLH-MYB complex controls trichome cell fate and patterning through direct targeting of regulatory loci
    • Zhao, M., Morohashi, K., Hatlestad, G., Grotewold, E. and Lloyd, A. (2008) The TTG1-bHLH-MYB complex controls trichome cell fate and patterning through direct targeting of regulatory loci. Development, 135, 1991-1999.
    • (2008) Development , vol.135 , pp. 1991-1999
    • Zhao, M.1    Morohashi, K.2    Hatlestad, G.3    Grotewold, E.4    Lloyd, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.