Flanking SNP markers for vicine–convicine concentration in faba bean (Vicia faba L.)

Molecular Breeding

Volumn 35, Issue 1, 2015, Pages

  Khazaei, Hamid ^a   O’Sullivan, Donal M ^b   Jones, Huw ^c   Pitts, Nicholas ^c,d   Sillanpää, Mikko J ^e   Pärssinen, Pertti ^f   Manninen, Outi ^f   Stoddard, Frederick L ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF READING   (United Kingdom)

^c NATIONAL INSTITUTE OF AGRICULTURAL BOTANY   (United Kingdom)

^d UNIVERSITY OF MANCHESTER   (United Kingdom)

^e UNIVERSITY OF OULU   (Finland)

^f Boreal Plant Breeding Ltd   (Finland)

Author keywords

Faba bean; Medicago truncatula; QTL; SNPs; Vicine and convicine

Indexed keywords

BIOSYNTHESIS; PLANTS (BOTANY);

BIOSYNTHETIC PATHWAY; CANDIDATE GENES; CONVICINE; FABA BEANS; MEDICAGO TRUNCATULA; QTL; RELATED COMPOUNDS; SNP; VICIA FABA; VICINE AND CONVICINE;

GENES;

MEDICAGO TRUNCATULA; VICIA FABA;

EID: 84921328198     PISSN: 13803743     EISSN: 15729788     Source Type: Journal    
DOI: 10.1007/s11032-015-0214-8     Document Type: Article

References (23)

1. Broman KW (2003) Mapping quantitative trait loci in the case of a spike in the phenotype distribution. Genetics 163:1169–1175
2. Churchill G, Doerge R (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963–971
3. Conneally PM, Edwarks JH, Kidd KK, Lalouel J-M, Morton NE, Ott J, White R (1985) Report of the committee on methods of linkage analysis and reporting. Cytogenet Cell Genet 40:356–359
4. Cottage A, Gostkiewicz K, Thomas JE, Borrows R, Torres AM, O’Sullivan DM (2012) Heterozygosity and diversity analysis using mapped SNPs in a faba bean inbreeding programme. Mol Breed 30:1799–1809
5. Crépon K, Marget P, Peyronnet C, Carrouée B, Arese P, Duc G (2010) Nutritional value of faba bean (Vicia faba L.) seeds for feed and food. Field Crops Res 115:329–339
6. Duc G, Sixdenier G, Lila M, Furstoss V (1989) Search of genetic variability for vicine and convicine content in Vicia faba L. A first report of a gene which codes for nearly zero-vicine and zero-convicine contents. Wageningen, The Netherlands (Pbs), pp 305–313
7. Duc G, Marget P, Esnault R, Le Guen J, Bastianelli D (1999) Genetic variability for feeding value of faba bean seeds (Vicia faba L.): comparative chemical composition of isogenics involving zero-tannin and zero-vicine genes. J Agric Sci 133:185–196
8. Duc G, Marget P, Page D, Domoney C (2004) Facile breeding markers to lower contents of vicine and convicine in faba bean seeds and trypsin inhibitors in pea seeds. 4. International Workshop on Antinutritional Factors in Legume Seeds and Oilseeds, 2004/03/08-10, Toledo (ESP). EEAP, European association for animal production (FRA). In: Musquiz M, Hill GD, Cuadrado MM, Burbano C (eds) Recent advances of research in antinutritional factors in legume seeds and oilseeds. Wageningen Academic Publishers, The Netherlands, pp 281–285
9. Gutierrez N, Avila CM, Duc G, Marget P, Suso MJ, Moreno MT, Torres AM (2006) CAPs markers to assist selection for low vicine and convicine contents in faba bean (Vicia faba L.). Theor Appl Genet 114:59–66
10. Jansen RC (1993) Interval mapping of multiple quantitative trait loci. Genetics 135:205–211
11. Kaur S, Kimber RBE, Cogan NOI, Materne M, Forster JW, Paull J (2014) SNP discovery and high-density genetic mapping in faba bean (Vicia faba L.) permits identification of QTLs for ascochyta blight resistance. Plant Sci 217–218:47–55
12. Khamassi K, Ben Jeddi F, Hobbs D, Irigoyen J, Stoddard F, O’Sullivan DM, Jones H (2013) A baseline study of vicine–convicine levels in faba bean (Vicia faba L.) germplasm. Plant Genet Resour 11:250–257
13. Khazaei H, O’Sullivan DM, Sillanpää MJ, Stoddard FL (2014) Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.). Theor Appl Genet 127:2371–2385
14. Kosambi DD (1943) The estimation of map distance from recombination values. Ann Eugen 12:172–175
15. Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185–194
16. Lorieux M (2012) MapDisto: fast and efficient computation of genetic linkage map. Mol Breed 30:1231–1235
17. Semagn K, Babu R, Hearne S, Olsen M (2014) Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement. Mol Breed 33:1–14
18. Sixdenier G, Cassecuelle F, Guillaumin L, Duc G (1996) Rapid spectrophotometric method for reduction of vicine and convicine in faba bean seed. FABIS Newslett 38(39):42–44
19. van Ooijen JW (1992) Accuracy of mapping quantitative trait loci in autogamous species. Theor Appl Genet 84:803–811
20. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78
21. Wang S, Basten CJ, Zeng Z-B (2012) Windows QTL cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC. http://statgen.ncsu.edu/qtlcart/WQTLCart.htm
22. Webb A, Cottage A, Wood T, Khamassi K, Hobbs D, Gostkiewicz K, White M, Khazaei H, Ali M, Street D, Stoddard FL, Maalouf F, Ogbonnaya F, Link W, Thomas J, O’Sullivan DM (2015) A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.). Plant Biotechnol J (in press)
23. Zeng Z-B (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc Natl Acad Sci USA 90:10972–10976