Disaggregating polyploidy, parental genome dosage and hybridity contributions to heterosis in Arabidopsis thaliana

New Phytologist

Volumn 209, Issue 2, 2016, Pages 590-599

  Fort, Antoine ^a   Ryder, Peter ^a   Mckeown, Peter C ^a   Wijnen, Cris ^b   Aarts, Mark G ^b   Sulpice, Ronan ^a   Spillane, Charles ^a  

^a NATIONAL UNIVERSITY OF IRELAND   (Ireland)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Arabidopsis thaliana; Genome dosage; Heterosis; Hybridity; Parental effect; Polyploidy

Indexed keywords

BODY SIZE; CROP PLANT; DICOTYLEDON; DIVERGENCE; GENETIC VARIATION; GENOME; GROWTH RATE; HETEROSIS; HYBRID; PARENTAL INVESTMENT; POLYPLOIDY; SEED SIZE;

ARABIDOPSIS THALIANA;

ANATOMY AND HISTOLOGY; ARABIDOPSIS; GENETICS; GROWTH, DEVELOPMENT AND AGING; HETEROSIS; HYBRIDIZATION; PLANT GENOME; PLANT SEED; POLYPLOIDY; TRIPLOIDY;

ARABIDOPSIS; GENOME, PLANT; HYBRID VIGOR; HYBRIDIZATION, GENETIC; POLYPLOIDY; SEEDS; TRIPLOIDY;

EID: 84954481212     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.13650     Document Type: Article

References (44)

1. Adams S, Vinkenoog R, Spielman M, Dickinson HG, Scott RJ. 2000. Parent-of-origin effects on seed development in Arabidopsis thaliana require DNA methylation. Development 127: 2493-2502.
2. Ashby E. 1932. Studies in the inheritance of physiological characters. II. Further experiments upon the basis of hybrid vigour and upon the inheritance of efficiency index and respiration rate in maize. Annals of Botany 46: 1007-1032.
3. te Beest M, Le Roux JJ, Richardson DM, Brysting AK, Suda J, Kubešová M, Pyšek P. 2012. The more the better? The role of polyploidy in facilitating plant invasions. Annals of Botany 109: 19-45.
4. Birchler JA, Riddle NC, Auger DL, Veitia RA. 2005. Dosage balance in gene regulation: biological implications. Trends in Genetics 21: 219-226.
5. Birchler JA, Yao H, Chudalayandi S, Vaiman D, Veitia RA. 2010. Heterosis. The Plant Cell Online 22: 2105-2112.
6. Bours R, Muthuraman M, Bouwmeester H, van der Krol A. 2012. OSCILLATOR: a system for analysis of diurnal leaf growth using infrared photography combined with wavelet transformation. Plant Methods 8: 29.
7. Boyes DC, Zayed AM, Ascenzi R, McCaskill AJ, Hoffman NE, Davis KR, Görlach J. 2001. Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. The Plant Cell Online 13: 1499-1510.
8. Cavalier-Smith T. 1978. Nuclear volume control by nucleoskeletal DNA, selection for cell volume and cell growth rate, and the solution of the DNA C-value paradox. Journal of Cell Science 34: 247-278.
9. Chao D-Y, Dilkes B, Luo H, Douglas A, Yakubova E, Lahner B, Salt DE. 2013. Polyploids exhibit higher potassium uptake and salinity tolerance in Arabidopsis. Science 341: 658-659.
10. Chen ZJ. 2010. Molecular mechanisms of polyploidy and hybrid vigor. Trends in Plant Science 15: 57-71.
11. Chen ZJ. 2013. Genomic and epigenetic insights into the molecular bases of heterosis. Nature Reviews Genetics 14: 471-482.
12. Chen ZJ, Ni Z. 2006. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. BioEssays 28: 240-252.
13. Comai L. 2005. The advantages and disadvantages of being polyploid. Nature Reviews Genetics 6: 836-846.
14. Dapp M, Reinders J, Bédiée A, Balsera C, Bucher E, Theiler G, Granier C, Paszkowski J. 2015. Heterosis and inbreeding depression of epigenetic Arabidopsis hybrids. Nature Plants 1: 15092.
15. 1 triploid plants. DNA Research 21: 141-151.
16. Dornbusch T, Michaud O, Xenarios I, Fankhauser C. 2014. Differentially phased leaf growth and movements in Arabidopsis depend on coordinated circadian and light regulation. The Plant Cell Online 26: 3911-3921.
17. 1 hybrid triploid plants are heritable and display epigenetic parent-of-origin effects. New Phytologist 198: 71-81.
18. Frascaroli E, Canè MA, Landi P, Pea G, Gianfranceschi L, Villa M, Morgante M, Pè ME. 2007. Classical genetic and quantitative trait loci analyses of heterosis in a maize hybrid between two elite inbred lines. Genetics 176: 625-644.
19. Groszmann M, Gonzalez-Bayon R, Greaves IK, Wang L, Huen AK, Peacock WJ, Dennis ES. 2014. Intraspecific Arabidopsis hybrids show different patterns of heterosis despite the close relatedness of the parental genomes. Plant Physiology 166: 265-280.
20. Groszmann M, Greaves IK, Fujimoto R, James Peacock W, Dennis ES. 2013. The role of epigenetics in hybrid vigour. Trends in Genetics 29: 684-690.
21. Hauben M, Haesendonckx B, Standaert E, Van Der Kelen K, Azmi A, Akpo H, Van Breusegem F, Guisez Y, Bots M, Lambert B et al. 2009. Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield. Proceedings of the National Academy of Sciences, USA 106: 20109-20114.
22. Hoffmann WA, Poorter H. 2002. Avoiding bias in calculations of relative growth rate. Annals of Botany 90: 37-42.
23. Hollick JB, Chandler VL. 1998. Epigenetic allelic states of a maize transcriptional regulatory locus exhibit overdominant gene action. Genetics 150: 891-897.
24. 1 embryo and endosperm tissues 6 days after fertilization. Theoretical and Applied Genetics 120: 389-400.
25. Kondorosi E, Roudier F, Gendreau E. 2000. Plant cell-size control: growing by ploidy? Current Opinion in Plant Biology 3: 488-492.
26. Krieger U, Lippman ZB, Zamir D. 2010. The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nature Genetics 42: 459-463.
27. Lafon-Placette C, Köhler C. 2014. Embryo and endosperm, partners in seed development. Current Opinion in Plant Biology 17: 64-69.
28. Meyer RC, Törjék O, Becher M, Altmann T. 2004. Heterosis of biomass production in Arabidopsis. Establishment during early development. Plant Physiology 134: 1813-1823.
29. Miller M, Zhang C, Chen ZJ. 2012. Ploidy and hybridity effects on growth vigor and gene expression in Arabidopsis thaliana hybrids and their parents. G3: Genes, Genomes, Genetics 2: 505-513.
30. Porter KB, Weiss MG. 1948. The effect of polyploidy on soybeans. Journal of the American Society of Agronomy 40: 710-724.
31. Prentis PJ, Wilson JRU, Dormontt EE, Richardson DM, Lowe AJ. 2008. Adaptive evolution in invasive species. Trends in Plant Science 13: 288-294.
32. Riddle NC, Birchler JA. 2008. Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels. Theoretical and Applied Genetics 116: 563-576.
33. van Rooijen R, Aarts MG, Harbinson J. 2015. Natural genetic variation for acclimation of photosynthetic light use efficiency to growth irradiance in Arabidopsis. Plant Physiology 167: 1412-1429.
34. Schnable PS, Springer NM. 2013. Progress toward understanding heterosis in crop plants. Annual Review of Plant Biology 64: 71-88.
35. Scott RJ, Spielman M, Bailey J, Dickinson HG. 1998. Parent-of-origin effects on seed development in Arabidopsis thaliana. Development 125: 3329.
36. Sugimoto-Shirasu K, Roberts K. 2003. "Big it up": endoreduplication and cell-size control in plants. Current Opinion in Plant Biology 6: 544-553.
37. Swanson-Wagner RA, DeCook R, Jia Y, Bancroft T, Ji T, Zhao X, Nettleton D, Schnable PS. 2009. Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science 326: 1118-1120.
38. Tester M, Langridge P. 2010. Breeding technologies to increase crop production in a changing world. Science 327: 818-822.
39. Wang J, Tian L, Lee HS, Wei NE, Jiang H, Watson B, Madlung A, Osborn TC, Doerge RW, Comai L et al. 2006. Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics 172: 507-517.
40. Washburn JD, Birchler JA. 2014. Polyploids as a "model system" for the study of heterosis. Plant Reproduction 27: 1-5.
41. Yamada M, Ishige T, Ohkawa Y. 1985. Reappraisal of Ashby's hypothesis on heterosis of physiological traits in maize, Zea mays L. Euphytica 34: 593-598.
42. Yao H, Dogra Gray A, Auger DL, Birchler JA. 2013. Genomic dosage effects on heterosis in triploid maize. Proceedings of the National Academy of Sciences, USA 110: 2665-2669.
43. Yu S, Li J, Xu C, Tan Y, Gao Y, Li X, Zhang Q, Maroof MS. 1997. Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid. Proceedings of the National Academy of Sciences, USA 94: 9226-9231.
44. Yu Z, Haberer G, Matthes M, Rattei T, Mayer KFX, Gierl A, Torres-Ruiz RA. 2010. Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana. Proceedings of the National Academy of Sciences, USA 107: 17809-17814.