-
1
-
-
84939166577
-
Three-dimensional distribution of cortical synapses: A replicated point pattern-based analysis
-
Anton-Sanchez, L., Bielza, C., Merchán-Pérez, A., Rodríguez, J.-R., DeFelipe, J., & Larrañaga, P. (2014). Three-dimensional distribution of cortical synapses: A replicated point pattern-based analysis. Frontiers in Neuroanaty, 8, 85. doi:10.3389/fnana.2014.00085.
-
(2014)
Frontiers in Neuroanaty
, vol.8
, pp. 85
-
-
Anton-Sanchez, L.1
Bielza, C.2
Merchán-Pérez, A.3
Rodríguez, J.-R.4
DeFelipe, J.5
Larrañaga, P.6
-
2
-
-
84885143291
-
Learning Context Cues for Synapse Segmentation
-
PID: 23771317
-
Becker, CJ, Ali, K, Knott, G, & Fua, P (2013). Learning Context Cues for Synapse Segmentation. IEEE Transactions on Medical Imaging, 32(10), 1864–1877. doi:10.1109/Tmi.2013.2267747.
-
(2013)
IEEE Transactions on Medical Imaging
, vol.32
, Issue.10
, pp. 1864-1877
-
-
Becker, C.J.1
Ali, K.2
Knott, G.3
Fua, P.4
-
3
-
-
0035509961
-
Fast approximate energy minimization via graph cuts
-
Boykov, Y, Veksler, O, & Zabih, R (2001). Fast approximate energy minimization via graph cuts. IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI), 23(11), 1222– 1239.
-
(2001)
IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI)
, vol.23
, Issue.11
, pp. 1222-1239
-
-
Boykov, Y.1
Veksler, O.2
Zabih, R.3
-
4
-
-
78649395746
-
From the connectome to the synaptome: An epic love story
-
COI: 1:CAS:528:DC%2BC3cXhsVGrtr7I, PID: 21109663
-
DeFelipe, J (2010). From the connectome to the synaptome: An epic love story. Science, 330(6008), 1198–1201.
-
(2010)
Science
, vol.330
, Issue.6008
, pp. 1198-1201
-
-
DeFelipe, J.1
-
5
-
-
14044262855
-
Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
-
PID: 15514700
-
Denk, W, & Horstmann, H (2004). Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS biology, 2(11), e329. doi:10.1371/journal.pbio.002032910.1371/journal.pbio.0020329.
-
(2004)
PLoS biology
, vol.2
, Issue.11
, pp. 329
-
-
Denk, W.1
Horstmann, H.2
-
6
-
-
84856792963
-
Method: Automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets
-
PID: 22321695
-
Giuly, R, Martone, M, & Ellisman, M (2012). Method: Automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets. BMC Bioinformatics, 13(1), 29+. doi:10.1186/1471-2105-13-29.
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.1
, pp. 29+
-
-
Giuly, R.1
Martone, M.2
Ellisman, M.3
-
7
-
-
84962694603
-
-
Haindl, M, & Mikes, S (2008). Texture segmentation benchmark. In ICPR, IEEE. (pp. 1–4)
-
Haindl, M, & Mikes, S (2008). Texture segmentation benchmark. In ICPR, IEEE. http://dblp.uni-trier.de/db/conf/icpr/icpr2008.html#HaindlM08a (pp. 1–4).
-
-
-
-
8
-
-
84899455282
-
-
Synapse classification and localization in electron micrographs, Pattern Recognition Letters
-
Jagadeesh, V, Anderson, J, Jones, B, Marc, R, Fisher, S, & Manjunath, B (2013). Synapse classification and localization in electron micrographs. Pattern Recognition Letters. doi:10.1016/j.patrec.2013.06.001.
-
(2013)
& Manjunath, B
-
-
Jagadeesh, V.1
Anderson, J.2
Jones, B.3
Marc, R.4
Fisher, S.5
-
9
-
-
57049129820
-
Axon tracking in serial block-face scanning electron microscopy
-
PID: 18617436, Includes Special Section on Medical Image Analysis on the 2006 Workshop Microscopic Image Analysis with Applications in Biology
-
Jurrus, E, Hardy, M, Tasdizen, T, Fletcher, PT, Koshevoy, P, Chien, CB, Denk, W, & Whitaker, R (2009). Axon tracking in serial block-face scanning electron microscopy. Medical Image Analysis, 13 (1), 180–188. doi:10.1016/j.media.2008.05.002. Includes Special Section on Medical Image Analysis on the 2006 Workshop Microscopic Image Analysis with Applications in Biology.
-
(2009)
Medical Image Analysis
, vol.13
, Issue.1
, pp. 180-188
-
-
Jurrus, E.1
Hardy, M.2
Tasdizen, T.3
Fletcher, P.T.4
Koshevoy, P.5
Chien, C.B.6
Denk, W.7
Whitaker, R.8
-
10
-
-
41149120500
-
Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling
-
COI: 1:CAS:528:DC%2BD1cXjvFCjs7k%3D, PID: 18353998
-
Knott, G, Marchman, H, Wall, D, & Lich, B (2008). Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling. Journal of Neuroscience, 28(12), 2959–2964. doi:10.1523/JNEUROSCI.3189-07.2008.
-
(2008)
Journal of Neuroscience
, vol.28
, Issue.12
, pp. 2959-2964
-
-
Knott, G.1
Marchman, H.2
Wall, D.3
Lich, B.4
-
11
-
-
80054845687
-
Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images
-
Kreshuk, A, Straehle, C, Sommer, C, Koethe, U, Cantoni, M, Knott, G, & Hamprecht, F (2011). Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images. PLoS ONE, 6, e24899. doi:10.1371/journal.pone.002489910.1371/journal.pone.0024899.
-
(2011)
PLoS ONE
, vol.e24899
, pp. 6
-
-
Kreshuk, A.1
Straehle, C.2
Sommer, C.3
Koethe, U.4
Cantoni, M.5
Knott, G.6
Hamprecht, F.7
-
12
-
-
77955986742
-
-
Lempitsky, VS (2010). Surface extraction from binary volumes with higher-order smoothness. In Proc. International Conference on Computer Vision and Pattern Recognition (CVPR), IEEE. (pp. 1197–1204)
-
Lempitsky, VS (2010). Surface extraction from binary volumes with higher-order smoothness. In Proc. International Conference on Computer Vision and Pattern Recognition (CVPR), IEEE. http://dblp.uni-trier.de/db/conf/cvpr/cvpr2010.html#Lempitsky10 (pp. 1197–1204).
-
-
-
-
13
-
-
84856735789
-
Supervoxel-based segmentation of mitochondria in em image stacks with learned shape features
-
PID: 21997252
-
Lucchi, A, Smith, K, Achanta, R, Knott, G, & Fua, P (2012). Supervoxel-based segmentation of mitochondria in em image stacks with learned shape features. IEEE Transactions on Medical Imaging, 31(2), 474–486. http://dblp.uni-trier.de/db/journals/tmi/tmi31.html#LucchiSAKF12.
-
(2012)
IEEE Transactions on Medical Imaging
, vol.31
, Issue.2
, pp. 474-486
-
-
Lucchi, A.1
Smith, K.2
Achanta, R.3
Knott, G.4
Fua, P.5
-
14
-
-
0034850577
-
-
Martin, D, Fowlkes, C, Tal, D, & Malik, J. (2001). A database of human segmented natural images and its application to evaluating segmentation algorithms and measuring ecological statistics (Vol. 2, pp. 416–423).
-
(2001)
A database of human segmented natural images and its application to evaluating segmentation algorithms and measuring ecological statistics
, vol.2
, pp. 416-423
-
-
Martin, D.1
Fowlkes, C.2
Tal, D.3
Malik, J.4
-
15
-
-
33746016268
-
Mitochondria: More than just a powerhouse
-
COI: 1:CAS:528:DC%2BD28XntlCrur4%3D, PID: 16860735
-
McBride, HM, Neuspiel, M, & Wasiak, S (2006). Mitochondria: More than just a powerhouse. Current Biology, 16(14), R551–R560. doi:10.1016/j.cub.2006.06.054.
-
(2006)
Current Biology
, vol.16
, Issue.14
, pp. R551-R560
-
-
McBride, H.M.1
Neuspiel, M.2
Wasiak, S.3
-
16
-
-
77954847643
-
Counting synapses using FIB/SEM microscopy: a true revolution for ultrastructural volume reconstruction. Frontiers in Neuroanatomy, 3(18)
-
Merchan-Perez, A, Rodriguez, JR, Alonso-Nanclares, L, Schertel, A, & DeFelipe, J (2009). Counting synapses using FIB/SEM microscopy: a true revolution for ultrastructural volume reconstruction. Frontiers in Neuroanatomy, 3(18). doi:10.3389/neuro.05.018.2009. http://www.frontiersin.org/neuroanatomy/10.3389/neuro.05.018.2009/abstract.
-
(2009)
doi:10.3389/neuro.05.018.2009
-
-
Merchan-Perez, A.1
Rodriguez, J.R.2
Alonso-Nanclares, L.3
Schertel, A.4
DeFelipe, J.5
-
17
-
-
84862983600
-
Espina: a tool for the automated segmentation and counting of synapses in large stacks of electron microscopy images
-
Morales, J, Alonso-Nanclares, L, Rodriguez, JR, Defelipe, J, Rodriguez, A, & Merchan-Perez, A (2011). Espina: a tool for the automated segmentation and counting of synapses in large stacks of electron microscopy images. Frontiers in Neuroanatomy, 5(18).
-
(2011)
Frontiers in Neuroanatomy
, vol.5
, Issue.18
-
-
Morales, J.1
Alonso-Nanclares, L.2
Rodriguez, J.R.3
Defelipe, J.4
Rodriguez, A.5
Merchan-Perez, A.6
-
18
-
-
59149098932
-
Automatic joint classification and segmentation of whole cell 3d images
-
Narasimha, R, Ouyang, H, Gray, A, McLaughlin, SW, & Subramaniam, S (2009). Automatic joint classification and segmentation of whole cell 3d images. Pattern Recognition, 42(6), 1067–1079. doi:10.1016/j.patcog.2008.08.009.
-
(2009)
Pattern Recognition
, vol.42
, Issue.6
, pp. 1067-1079
-
-
Narasimha, R.1
Ouyang, H.2
Gray, A.3
McLaughlin, S.W.4
Subramaniam, S.5
-
19
-
-
84879949941
-
A high-throughput framework to detect synapses in electron microscopy images
-
Navlakha, S, Suhan, J, Barth, AL, & Bar-Joseph, Z (2013). A high-throughput framework to detect synapses in electron microscopy images. Bioinformatics 29, 13, i9–i17. doi:10.1093/bioinformatics/btt222.
-
(2013)
Bioinformatics 29
, vol.13
, pp. i9-i17
-
-
Navlakha, S.1
Suhan, J.2
Barth, A.L.3
Bar-Joseph, Z.4
-
20
-
-
77956026971
-
Alzheimer’s disease: diverse aspects of mitochondrial malfunctioning
-
COI: 1:CAS:528:DC%2BC3cXptFagtbw%3D, PID: 20661404
-
Santos, RX, Correia, SC, Wang, X, Perry, G, Smith, MA, Moreira, PI, & Zhu, X (2010). Alzheimer’s disease: diverse aspects of mitochondrial malfunctioning. International Journal of Clinical and Experimental Pathology, 3, 570–581.
-
(2010)
International Journal of Clinical and Experimental Pathology
, vol.3
, pp. 570-581
-
-
Santos, R.X.1
Correia, S.C.2
Wang, X.3
Perry, G.4
Smith, M.A.5
Moreira, P.I.6
Zhu, X.7
-
21
-
-
79961198540
-
-
Sommer, C, Straehle, C, Kothe, U, & Hamprecht, F (2011). Ilastik: Interactive learning and segmentation toolkit. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro. (pp. 230–233)
-
Sommer, C, Straehle, C, Kothe, U, & Hamprecht, F (2011). Ilastik: Interactive learning and segmentation toolkit. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro. doi:10.1109/ISBI.2011.5872394 (pp. 230–233).
-
-
-
-
22
-
-
77649302828
-
Convolutional networks can learn to generate affinity graphs for image segmentation
-
PID: 19922289
-
Turaga, SC, Murray, JF, Jain, V, Roth, F, Helmstaedter, M, Briggman, K, Denk, W, & Seung, HS (2010). Convolutional networks can learn to generate affinity graphs for image segmentation. Neural Computation, 22, 511–538.
-
(2010)
Neural Computation
, vol.22
, pp. 511-538
-
-
Turaga, S.C.1
Murray, J.F.2
Jain, V.3
Roth, F.4
Helmstaedter, M.5
Briggman, K.6
Denk, W.7
Seung, H.S.8
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