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Volumn 32, Issue 10, 2013, Pages 1864-1877

Learning context cues for synapse segmentation

Author keywords

AdaBoost; Connectomics; Electron microscopy; Pose indexing; Synapse segmentation

Indexed keywords

AUTOMATED SEGMENTATION; CONNECTOMICS; IMAGE FEATURES; LEARNING CONTEXT; ORIENTATION STATISTICS; POSE-INDEXING; SPATIAL CONTEXT; TEXTURAL PROPERTIES;

EID: 84885143291     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/TMI.2013.2267747     Document Type: Article
Times cited : (47)

References (37)
  • 3
    • 54249156699 scopus 로고    scopus 로고
    • Segmentation of sbfsem volume data of neural tissue by hierarchical classification
    • Berlin Germany: Springer ch. 15
    • B. Andres,U. Köthe, M. Helmstaedter,W. Denk, and F. A. Hamprecht, Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification. Berlin, Germany: Springer, 2008, vol. 5096, Lecture Notes Computer Science, ch. 15, pp. 142-152.
    • (2008) Lecture Notes Computer Science , vol.5096 , pp. 142-152
    • Andres, B.1    Köthe, U.2    Helmstaedter, M.3    Denk, W.4    Hamprecht, F.A.5
  • 4
    • 26444473610 scopus 로고    scopus 로고
    • An energy-based three-dimensional segmentation approach for the quantitative interpretation of electron tomograms
    • Sep
    • A. Bartesaghi, G. Sapiro, and S. Subramaniam, "An energy-based three-dimensional segmentation approach for the quantitative interpretation of electron tomograms," IEEE Trans. Image Process., vol. 14, no. 9, pp. 1314-1323, Sep. 2005.
    • (2005) IEEE Trans. Image Process , vol.14 , Issue.9 , pp. 1314-1323
    • Bartesaghi, A.1    Sapiro, G.2    Subramaniam, S.3
  • 5
    • 84872520794 scopus 로고    scopus 로고
    • Learning context cues for synapse segmentation in em volumes
    • Sep
    • C. Becker, K. Ali, G. Knott, and P. Fua, "Learning context cues for synapse segmentation in EM volumes," in MICCAI, Sep. 2012.
    • (2012) MICCAI
    • Becker, C.1    Ali, K.2    Knott, G.3    Fua, P.4
  • 7
    • 0028444940 scopus 로고
    • Computer-assisted registration, segmentation, and 3-D reconstruction from images of neuronal tissue sections
    • Jun
    • I. Carlbom, D. Terzopoulos, and K. Harris, "Computer-assisted registration, segmentation, and 3-D reconstruction from images of neuronal tissue sections," IEEE Trans. Med. Imag., vol. 13, no. 2, pp. 351-362, Jun. 1994.
    • (1994) IEEE Trans. Med. Imag , vol.13 , Issue.2 , pp. 351-362
    • Carlbom, I.1    Terzopoulos, D.2    Harris, K.3
  • 8
    • 0032741181 scopus 로고    scopus 로고
    • Estimation of the number of synapses in the cerebral cortex: Methodological considerations
    • Oct
    • J. DeFelipe, P. Marco, I. Busturia, and A. Merchán-Pérez, "Estimation of the number of synapses in the cerebral cortex: Methodological considerations," Cerebral Cortex, vol. 9, no. 7, pp. 722-732, Oct. 1999.
    • (1999) Cerebral Cortex , vol.9 , Issue.7 , pp. 722-732
    • Defelipe, J.1    Marco, P.2    Busturia, I.3    Merchán-Pérez, A.4
  • 10
    • 17144363197 scopus 로고    scopus 로고
    • Reconstruct: A free editor for serial section microscopy
    • J. C. Fiala, "Reconstruct: A free editor for serial section microscopy," J. Microscopy, vol. 218, pp. 52-61, 2005.
    • (2005) J. Microscopy , vol.218 , pp. 52-61
    • Fiala, J.C.1
  • 11
    • 0035136165 scopus 로고    scopus 로고
    • Extending unbiased stereology of brain ultrastructure to three-dimensional volumes
    • J. C. Fiala and K. M. Harris, "Extending unbiased stereology of brain ultrastructure to three-dimensional volumes," J. Am. Med. Informat. Assoc., vol. 8, no. 1, pp. 1-16, 2001.
    • (2001) J. Am. Med. Informat. Assoc , vol.8 , Issue.1 , pp. 1-16
    • Fiala, J.C.1    Harris, K.M.2
  • 12
    • 57249114549 scopus 로고    scopus 로고
    • Stationary features and cat detection
    • F. Fleuret and D. Geman, "Stationary features and cat detection," J. Machine Learn. Res., vol. 9, pp. 2549-2578, 2008.
    • (2008) J. Machine Learn. Res , vol.9 , pp. 2549-2578
    • Fleuret, F.1    Geman, D.2
  • 14
    • 77956941398 scopus 로고    scopus 로고
    • Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications
    • Sep. 2010
    • J. Herold, W. Schubert, and T. W. Nattkemper, "Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications," J. Biotechnol., vol. 149, no. 4, pp. 299-309, Sep. 2010.
    • J. Biotechnol , vol.149 , Issue.4 , pp. 299-309
    • Herold, J.1    Schubert, W.2    Nattkemper, T.W.3
  • 15
    • 43049154614 scopus 로고    scopus 로고
    • Shape-driven three-dimensional watersnake segmentation of biological membranes in electron tomography
    • May
    • Q. J. H. Nguyen, "Shape-driven three-dimensional watersnake segmentation of biological membranes in electron tomography," IEEE Trans. Med. Imag., vol. 27, no. 5, pp. 616-628, May 2008.
    • (2008) IEEE Trans. Med. Imag , vol.27 , Issue.5 , pp. 616-628
    • Nguyen, Q.J.H.1
  • 21
    • 84866912879 scopus 로고    scopus 로고
    • Highthroughput computer method for 3-D neuronal structure reconstruction from the image stack of the drosophila brain and its applications
    • Sep
    • P.-C. Lee, C.-C. Chuang, A.-S. Chiang, and Y.-T. Ching, "Highthroughput computer method for 3-D neuronal structure reconstruction from the image stack of the drosophila brain and its applications," PLoS Computat. Biol., vol. 8, no. 9, p. e1002658, Sep. 2012.
    • (2012) PLoS Computat. Biol , vol.8 , Issue.9
    • Lee, P.-C.1    Chuang, C.-C.2    Chiang, A.-S.3    Ching, Y.-T.4
  • 23
    • 84856735789 scopus 로고    scopus 로고
    • Supervoxelbased segmentation of mitochondria in em image stacks with learned shape features
    • Feb
    • A. Lucchi, K. Smith, R. Achanta, G. Knott, and P. Fua, "Supervoxelbased segmentation of mitochondria in EM image stacks with learned shape features," IEEE Trans. Med. Imag., vol. 31, no. 2, pp. 474-486, Feb. 2011.
    • (2011) IEEE Trans. Med. Imag , vol.31 , Issue.2 , pp. 474-486
    • Lucchi, A.1    Smith, K.2    Achanta, R.3    Knott, G.4    Fua, P.5
  • 24
    • 36849078178 scopus 로고    scopus 로고
    • Contour-propagation algorithms for semi-automated reconstruction of neural processes
    • Jan
    • J. H. Macke, N. Maack, R. Gupta, W. Denk, B. Schlkopf, and A. Borst, "Contour-propagation algorithms for semi-automated reconstruction of neural processes," J. Neurosci. Methods, vol. 167, no. 2, pp. 349-357, Jan. 2008.
    • (2008) J. Neurosci. Methods , vol.167 , Issue.2 , pp. 349-357
    • MacKe, J.H.1    Maack, N.2    Gupta, R.3    Denk, W.4    Schlkopf, B.5    Borst, A.6
  • 25
    • 0031081742 scopus 로고    scopus 로고
    • Reconsidering mitochondrial structure: New views of an old organelle
    • C. A. Mannella, M. Marko, and K. Buttle, "Reconsidering mitochondrial structure: New views of an old organelle," Trends Biochem. Sci., vol. 22, pp. 37-38, 1997.
    • (1997) Trends Biochem. Sci , vol.22 , pp. 37-38
    • Mannella, C.A.1    Marko, M.2    Buttle, K.3
  • 26
    • 0035956989 scopus 로고    scopus 로고
    • Organellar relationships in the Golgi region of the pancreateic beta cell line, Hit-T15, visualized by high resolution electron tomography
    • B. Marsh, D. Mastronarde, K. Buttle, K. Howell, and J. McIntosh, "Organellar relationships in the Golgi region of the pancreateic beta cell line, Hit-T15, visualized by high resolution electron tomography," Proc. Nat. Acad. Sci., vol. 98, pp. 2399-2406, 2001.
    • (2001) Proc. Nat. Acad. Sci , vol.98 , pp. 2399-2406
    • Marsh, B.1    Mastronarde, D.2    Buttle, K.3    Howell, K.4    McIntosh, J.5
  • 27
    • 77954847643 scopus 로고    scopus 로고
    • Counting synapses using FIB/SEM microscopy: A true revolution for ultrastructural volume reconstruction
    • A. Merchán-Pérez, J.-R. Rodriguez, L. Alonso-Nanclares, A. Schertel, and J. Defelipe, "Counting synapses using FIB/SEM microscopy: A true revolution for ultrastructural volume reconstruction," Front Neuroanat., vol. 3, p. 18, 2009.
    • (2009) Front Neuroanat , vol.3 , pp. 18
    • Merchán-Pérez, A.1    Rodriguez, J.-R.2    Alonso-Nanclares, L.3    Schertel, A.4    Defelipe, J.5
  • 28
    • 77956990482 scopus 로고    scopus 로고
    • Ultrastructural analysis of hippocampal neuropil from the connectomics perspective
    • Sep. 2010
    • Y. Mishchenko, T. Hu, J. Spacek, J. Mendenhall, K. M. Harris, and D. B. Chklovskii, "Ultrastructural analysis of hippocampal neuropil from the connectomics perspective," Neuron., vol. 67, no. 6, pp. 1009-1020, Sep. 2010.
    • Neuron , vol.67 , Issue.6 , pp. 1009-1020
    • Mishchenko, Y.1    Hu, T.2    Spacek, J.3    Mendenhall, J.4    Harris, K.M.5    Chklovskii, D.B.6
  • 29
    • 69949157383 scopus 로고    scopus 로고
    • Graph cut segmentation of neuronal structures from transmission electron micrographs
    • N. Vu and B. Manjunath, "Graph cut segmentation of neuronal structures from transmission electron micrographs," in Proc. Int. Conf. Image Process., 2008, pp. 725-728.
    • (2008) Proc. Int. Conf. Image Process , pp. 725-728
    • Vu, N.1    Manjunath, B.2
  • 30
    • 59149098932 scopus 로고    scopus 로고
    • Automatic joint classification and segmentation of whole cell 3-D images
    • Jun
    • R. Narasimha, H. Ouyang, A. Gray, S. W. McLaughlin, and S. Subramaniam, "Automatic joint classification and segmentation of whole cell 3-D images," Pattern Recognit., vol. 42, no. 6, pp. 1067-1079, Jun. 2009.
    • (2009) Pattern Recognit , vol.42 , Issue.6 , pp. 1067-1079
    • Narasimha, R.1    Ouyang, H.2    Gray, A.3    McLaughlin, S.W.4    Subramaniam, S.5
  • 31
    • 57049136583 scopus 로고    scopus 로고
    • Spatio-temporal cell cycle phase analysis using level sets and fast marching methods
    • Feb
    • D. Padfield, J. Rittscher, N. Thomas, and B. Roysam, "Spatio- temporal cell cycle phase analysis using level sets and fast marching methods," Med. Image Anal., vol. 13, no. 1, pp. 143-155, Feb. 2009.
    • (2009) Med. Image Anal , vol.13 , Issue.1 , pp. 143-155
    • Padfield, D.1    Rittscher, J.2    Thomas, N.3    Roysam, B.4
  • 37
    • 0002221492 scopus 로고
    • The structure of the nervous system of the nematode Caenorhabditis elegans
    • Nov
    • J. G. White, E. Southgate, J. N. Thomson, and S. Brenner, "The structure of the nervous system of the nematode Caenorhabditis elegans," Phil. Trans. R. Soc. B Biol. Sci., vol. 314, no. 1165, pp. 1-340, Nov. 1986.
    • (1986) Phil. Trans. R. Soc. B Biol. Sci , vol.314 , Issue.1165 , pp. 1-340
    • White, J.G.1    Southgate, E.2    Thomson, J.N.3    Brenner, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.