Rate of establishing the gut microbiota in infancy has consequences for future health

Gut Microbes

Volumn 6, Issue 5, 2015, Pages 321-325

  Dogra, Shaillay ^a,f   Sakwinska, Olga ^b   Soh, Shu E ^c   Ngom Bru, Catherine ^b   Brück, Wolfram M ^b   Berger, Bernard ^b   Brüssow, Harald ^b   Karnani, Neerja ^a   Lee, Yung Seng ^a,c   Yap, Fabian ^d   Chong, Yap Seng ^a,c   Godfrey, Keith M ^e   Holbrook, Joanna D ^a  

^a AGENCY FOR SCIENCE   (Singapore)

^b NESTLÉ RESEARCH CENTER   (Switzerland)

^c NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^d KK WOMEN'S AND CHILDREN'S HOSPITAL   (Singapore)

^e UNIVERSITY HOSPITAL SOUTHAMPTON NHS FOUNDATION TRUST   (United Kingdom)

^f Vishuo BioMedical Pte Ltd   (Singapore)

Author keywords

Adiposity; Caesarean section; Defining profiling gut microbiome; Gestational age; Gut microbiota; Harnessing microbial strategies for treatment of human disease; Immaturity; Infancy; Obesity; Prematurity; Vaginal delivery

Indexed keywords

ADULT; DOCUMENTATION; ENVIRONMENTAL FACTOR; GEOGRAPHY; HUMAN; INFANCY; INFANT; INTESTINE FLORA; NEWBORN; SPECIES; SYNTHESIS; HEALTH; INTESTINE; MICROBIOLOGY; TIME FACTOR;

GASTROINTESTINAL MICROBIOME; HEALTH; HUMANS; INFANT; INFANT, NEWBORN; INTESTINES; TIME FACTORS;

EID: 84954237805     PISSN: 19490976     EISSN: 19490984     Source Type: Journal    
DOI: 10.1080/19490976.2015.1078051     Document Type: Review

References (48)

1. Aagaard K, Ma J, Antony KM, Ganu R, Petrosino J, Versalovic J. The placenta harbors a unique microbiome. Sci Transl Med 2014; 6:237ra65; PMID:24848255
2. Gao X, Jia R, Xie L, Kuang L, Feng L, Wan C. Obesity in school-aged children and its correlation with Gut E. coli and Bifidobacteria: a case-control study. BMC Pediatr 2015; 15:64; PMID:26024884; http://dx.doi. org/10.1186/s12887-015-0384-x
3. Karl JP, Fu X, Wang X, Zhao Y, Shen J, Zhang C, Wolfe BE, Saltzman E, Zhao L, Booth SL. Fecal menaquinone profiles of overweight adults are associated with gut microbiota composition during a gut microbiota-targeted dietary intervention. Am J Clin Nutr 2015; 102(1):84-93; PMID:26016865
4. Zhong CY, Sun WW, Ma Y, Zhu H, Yang P, Wei H, Zeng BH, Zhang Q, Liu Y, Li WX, et al. Microbiota prevents cholesterol loss from the body by regulating host gene expression in mice. Sci Rep 2015; 5:10512; PMID:26015368; http://dx.doi.org/10.1038/ srep10512
5. Putignani L, Del Chierico F, Petrucca A, Vernocchi P, Dallapiccola B. The human gut microbiota: a dynamic interplay with the host from birth to senescence settled during childhood. Pediatr Res 2014; 76:2-10; PMID:24732106; http://dx.doi.org/10.1038/pr.2014.49
6. Knights D, Ward TL, McKinlay CE, Miller H, Gonzalez A, McDonald D, Knight R. Rethinking “enterotypes.” Cell Host Microbe 2014; 16:433-7; PMID:25299329; http://dx.doi.org/10.1016/j. chom.2014.09.013
7. Collado MC, Cernada M, Bauerl C, Vento M, Perez Martinez G. Microbial ecology and host-microbiota interactions during early life stages. Gut Microbes 2012; 3:352-65; PMID:22743759; http://dx.doi.org/10.4161/gmic.21215
8. Kerr CA, Grice DM, Tran CD, Bauer DC, Li D, Hendry P, Hannan GN. Early life events influence wholeof-life metabolic health via gut microflora and gut permeability. Crit Rev Microbiol 2014; 41(3):326-40; PMID:24645635
9. Romano-Keeler J, Moore DJ, Wang C, Brucker RM, Fonnesbeck C, Slaughter JC, Li H, Curran DP, Meng S, Correa H, et al. Early life establishment of site-spe- cific microbial communities in the gut. Gut Microbes 2014; 5:192-201; PMID:24637795; http://dx.doi.org/10.4161/gmic.28442
10. Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, et al. Human gut micro- biome viewed across age and geography. Nature 2012; 486:222-7; PMID:22699611
11. La Rosa PS, Warner BB, Zhou Y, Weinstock GM, Sodergren E, Hall-Moore CM, Stevens HJ, Bennett WE, Jr., Shaikh N, Linneman LA, et al. Patterned progression of bacterial populations in the premature infant gut. Proc Natl Acad Sci USA 2014; 111:12522-7; PMID:25114261; http://dx.doi.org/10.1073/ pnas.1409497111
12. Matamoros S, Gras-Leguen C, Le Vacon F, Potel G, de La Cochetiere MF. Development of intestinal microbiota in infants and its impact on health. Trends Microbiol 2013; 21:167-73; PMID:23332725; http://dx.doi. org/10.1016/j.tim.2012.12.001
13. Dogra S, Sakwinska O, Soh SE, Ngom-Bru C, Bruck WM, Berger B, Brussow H, Lee YS, Yap F, Chong YS, et al. Dynamics of infant gut microbiota are influenced by delivery mode and gestational duration and are associated with subsequent adiposity. MBio 2015; 6: e02419-14; PMID:25650398
14. 14. Backhed F, Roswall J, Peng Y, Feng Q, Jia H, Kovatcheva-Datchary P, Li Y, Xia Y, Xie H, Zhong H, et al. Dynamics and Stabilization of the Human Gut Micro- biome during the First Year of Life. Cell Host Microbe 2015; 17:690-703; PMID:25974306; http://dx.doi.org/10.1016/j.chom.2015.04.004
15. Azad MB, Konya T, Maughan H, Guttman DS, Field CJ, Chari RS, Sears MR, Becker AB, Scott JA, Kozyrskyj AL, et al. Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months. CMAJ 2013; 185:385-94; PMID:23401405
16. Gritz EC, Bhandari V. The human neonatal gut microbiome: a brief review. Front Pediatr 2015; 3:17; PMID:25798435
17. Jakobsson HE, Abrahamsson TR, Jenmalm MC, Harris K, Quince C, Jernberg C, Bjorksten B, Engstrand L, Andersson AF. Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section. Gut 2014; 63:559-66; PMID:23926244; http://dx.doi.org/10.1136/gutjnl-2012-303249
18. Subramanian S, Huq S, Yatsunenko T, Haque R, Mahfuz M, Alam MA, Benezra A, DeStefano J, Meier MF, Muegge BD, et al. Persistent gut microbiota immaturity in malnourished Bangladeshi children. Nature 2014; 510:417-21; PMID:24896187
19. Groer MW, Luciano AA, Dishaw LJ, Ashmeade TL, Miller E, Gilbert JA. Development of the preterm infant gut microbiome: a research priority. Microbiome 2014; 2:38; PMID:25332768; http://dx.doi.org/10.1186/2049-2618-2-38
20. Butel MJ, Suau A, Campeotto F, Magne F, Aires J, Ferraris L, Kalach N, Leroux B, Dupont C. Conditions of bifidobacterial colonization in preterm infants: a pro- spective analysis. J Pediatr Gastroenterol Nutr 2007; 44:577-82; PMID:17460489; http://dx.doi.org/10.1097/MPG.0b013e3180406b20
21. Collado MC, Cernada M, Neu J, Perez-Martinez G, Gormaz M, Vento M. Factors influencing gastrointestinal tract and microbiota immune interaction in preterm infants. Pediatr Res 2015; 77:726-31; PMID:25760550; http://dx.doi.org/10.1038/ pr.2015.54
22. Stockinger S, Hornef MW, Chassin C. Establishment of intestinal homeostasis during the neonatal period. Cell Mol Life Sci 2011; 68:3699-712; PMID:21952827; http://dx.doi.org/10.1007/s00018- 011-0831-2
23. Elson CO, Alexander KL. Host-microbiota interactions in the intestine. Dig Dis 2015; 33:131-6; PMID:25925913; http://dx.doi.org/10.1159/ 000369534
24. Cobo ER, Kissoon-Singh V, Moreau F, Chadee K. Colonic MUC2 mucin regulates the expression and antimicrobial activity of beta-defensin 2. Mucosal Immunol 2015; PMID:25921338; http://dx.doi.org/10.1038/mi.2015.27
25. Athalye-Jape G, Deshpande G, Rao S, Patole S. Benefits of probiotics on enteral nutrition in preterm neonates: a systematic review. Am J Clin Nutr 2014; 100:1508-19; http://dx.doi.org/10.3945/ ajcn.114.092551
26. Kimble RM, Breier BH, Gluckman PD, Harding JE. Enteral IGF-I enhances fetal growth and gastrointestinal development in oesophageal ligated fetal sheep. J Endocrinol 1999; 162:227-35; PMID:10425460; http://dx.doi.org/10.1677/joe.0.1620227
27. Cox LM, Yamanishi S, Sohn J, Alekseyenko AV, Leung JM, Cho I, Kim SG, Li H, Gao Z, Mahana D, et al. Altering the intestinal microbiota during a critical developmental window has lasting metabolic conse- quences. Cell 2014; 158:705-21; PMID:25126780; http://dx.doi.org/10.1016/j.cell.2014.05.052
28. Trasande L, Blustein J, Liu M, Corwin E, Cox LM, Blaser MJ. Infant antibiotic exposures and early-life body mass. Int J Obes 2013; 37:16-23; PMID:22907693; http://dx.doi.org/10.1038/ijo.2012.132
29. Azad MB, Bridgman SL, Becker AB, Kozyrskyj AL. Infant antibiotic exposure and the development of childhood overweight and central adiposity. Int J Obes 2014; 38:1290-8; http://dx.doi.org/10.1038/ ijo.2014.119
30. Dardas M, Gill SR, Grier A, Pryhuber GS, Gill AL, Lee YH, Guillet R. The impact of postnatal antibiotics on the preterm intestinal microbiome. Pediatr Res 2014; 76:150-8; PMID:24819377; http://dx.doi.org/10.1038/pr.2014.69
31. Arboleya S, Sanchez B, Milani C, Duranti S, Solis G, Fernandez N, de los Reyes-Gavilan CG, Ventura M, Margolles A, Gueimonde M. Intestinal microbiota development in preterm neonates and effect of perinatal antibiotics. J Pediatr 2015; 166:538-44; http://dx.doi.org/10.1016/j.jpeds.2014.09.041
32. Gough EK, Moodie EE, Prendergast AJ, Johnson SM, Humphrey JH, Stoltzfus RJ, Walker AS, Trehan I, Gibb DM, Goto R, et al. The impact of antibiotics on growth in children in low and middle income countries: systematic review and meta-analysis of randomised controlled trials. Bmj 2014; 348: g2267; PMID:24735883; http://dx.doi.org/10.1136/ bmj.g2267
33. Ajslev TA, Andersen CS, Gamborg M, Sorensen TI, Jess T. Childhood overweight after establishment of the gut microbiota: the role of delivery mode, pre-pregnancy weight and early administration of antibiotics. Int J Obesity 2011; 35:522-9; http://dx.doi.org/10.1038/ijo.2011.27
34. Lane RH. Fetal programming, epigenetics, and adult onset disease. Clin Perinatol 2014; 41:815-31; PMID:25459776; http://dx.doi.org/10.1016/j. clp.2014.08.006
35. Bayman E, Drake AJ, Piyasena C. Prematurity and programming of cardiovascular disease risk: a future challenge for public health? Arch Dis Child Fetal Neonatal Ed 2014; 99:F510-4; PMID:25135955; http://dx.doi. org/10.1136/archdischild-2014-306742
36. Portela DS, Vieira TO, Matos SM, de Oliveira NF, Vieira GO. Maternal obesity, environmental factors, cesarean delivery and breastfeeding as determinants of overweight and obesity in children: results from a cohort. BMC Pregnancy Childbirth 2015; 15:94; PMID:25884808; http://dx.doi.org/10.1186/s12884- 015-0518-z
37. Kuhle S, Tong OS, Woolcott CG. Association between caesarean section and childhood obesity: a systematic review and meta-analysis. Obes Rev 2015; 16:295-303; PMID:25752886; http://dx.doi.org/10.1111/ obr.12267
38. Zhu Y, Hernandez LM, Dong Y, Himes JH, Hirschfeld S, Forman MR. Longer breastfeeding duration reduces the positive relationships among gestational weight gain, birth weight and childhood anthropometrics. J Epidemiol Community Health 2015; 69(7):632-8; PMID:25680365
39. Kalliomaki M, Collado MC, Salminen S, Isolauri E. Early differences in fecal microbiota composition in children may predict overweight. Am J Clinical Nutr 2008; 87:534-8
40. Luoto R, Kalliomaki M, Laitinen K, Delzenne NM, Cani PD, Salminen S, Isolauri E. Initial dietary and microbiological environments deviate in normal-weight compared to overweight children at 10 years of age. J Pediatr Gastroenterol Nutri 2011; 52:90-5; http://dx.doi.org/10.1097/MPG.0b013e3181f3457f
41. Subramanian S, Blanton LV, Frese SA, Charbonneau M, Mills DA, Gordon JI. Cultivating Healthy Growth and Nutrition through the Gut Microbiota. Cell 2015; 161:36-48; PMID:25815983; http://dx.doi.org/10.1016/j.cell.2015.03.013
42. Dutta S, Ray P, Narang A. Comparison of Stool Colonization in Premature Infants by Three Dose Regimes of a Probiotic Combination: A Randomized Controlled Trial. Am J Perinatol 2014; 32(8):733-40; PMID:25519197
43. Miniello VL, Colasanto A, Cristofori F, Diaferio L, Ficele L, Lieggi MS, Santoiemma V, Francavilla R. Gut microbiota biomodulators, when the stork comes by the scalpel. Clin Chim Acta 2015; PMID:25668229; http://dx.doi.org/10.1016/j.cca.2015.01.022
44. Pacheco AR, Barile D, Underwood MA, Mills DA. The impact of the milk glycobiome on the neonate gut microbiota. Annu Rev Anim Biosci 2015; 3:419-45; PMID:25387230; http://dx.doi.org/10.1146/annurev- animal-022114-111112
45. Arboleya S, Bahrami B, Macfarlane S, Gueimonde M, Macfarlane GT, de Los Reyes-Gavilan CG. Production of immune response mediators by HT-29 intestinal cell-lines in the presence of Bifidobacterium-treated infant microbiota. Benef Microbes 2015; 6(4):1-10; PMID:25691102
46. Mueller NT, Bakacs E, Combellick J, Grigoryan Z, Dominguez-Bello MG. The infant microbiome development: mom matters. Trends Mol Med 2015; 21:109-17; PMID:25578246; http://dx.doi.org/10.1016/j.molmed.2014.12.002
47. David LA, Weil A, Ryan ET, Calderwood SB, Harris JB, Chowdhury F, Begum Y, Qadri F, LaRocque RC, Turnbaugh PJ. Gut microbial succession follows acute secretory diarrhea in humans. mBio 2015; 6:e00381-15
48. Hsiao A, Ahmed AM, Subramanian S, Griffin NW, Drewry LL, Petri WA, Jr., Haque R, Ahmed T, Gordon JI. Members of the human gut microbiota involved in recovery from Vibrio cholerae infection. Nat 2014; 515:423-6; PMID:25231861; http://dx.doi.org/10.1038/nature13738