-
1
-
-
24644501685
-
WebACT: an online companion for the artemis comparison tool
-
Abbott J.C., Aanensen D.M., Rutherford K., Butcher S., Spratt B.G. WebACT: an online companion for the artemis comparison tool. Bioinformatics 2005, 21:3665-3666.
-
(2005)
Bioinformatics
, vol.21
, pp. 3665-3666
-
-
Abbott, J.C.1
Aanensen, D.M.2
Rutherford, K.3
Butcher, S.4
Spratt, B.G.5
-
2
-
-
33644856639
-
The widespread occurrence of the enterohemolysin gene ehlyA among environmental strains of Escherichia coli
-
Boczek L.A., Johnson C.H., Rice E.W., Kinkle B.K. The widespread occurrence of the enterohemolysin gene ehlyA among environmental strains of Escherichia coli. FEMS Microbiol. Lett. 2005, 254:281-284.
-
(2005)
FEMS Microbiol. Lett.
, vol.254
, pp. 281-284
-
-
Boczek, L.A.1
Johnson, C.H.2
Rice, E.W.3
Kinkle, B.K.4
-
3
-
-
25844432970
-
Non-O157 Shiga toxin-producing Escherichia coli infections in the United States, 1983-2002
-
Brooks J.T., Sowers E.G., Wells J.G., Greene K.D., Griffin P.M., Hoekstra R.M., Strockbine N.A. Non-O157 Shiga toxin-producing Escherichia coli infections in the United States, 1983-2002. J. Infect. Dis. 2005, 192:1422-1429.
-
(2005)
J. Infect. Dis.
, vol.192
, pp. 1422-1429
-
-
Brooks, J.T.1
Sowers, E.G.2
Wells, J.G.3
Greene, K.D.4
Griffin, P.M.5
Hoekstra, R.M.6
Strockbine, N.A.7
-
4
-
-
0032942604
-
The large plasmid of Shiga toxin-producing Escherichia coli (STEC) are highly variable genetic elements
-
Brunder W., Schmidt H., Frosch M., Karch H. The large plasmid of Shiga toxin-producing Escherichia coli (STEC) are highly variable genetic elements. Microbiology 1999, 145:1005-1014.
-
(1999)
Microbiology
, vol.145
, pp. 1005-1014
-
-
Brunder, W.1
Schmidt, H.2
Frosch, M.3
Karch, H.4
-
5
-
-
27744453560
-
Identification of plasmids by PCR-based replicon typing
-
Carattoli A., Bertini A., Villa L., Falbo V., Hopkins K.L., Threlfall E.J. Identification of plasmids by PCR-based replicon typing. J. Microbiol. Methods 2005, 63:219-228.
-
(2005)
J. Microbiol. Methods
, vol.63
, pp. 219-228
-
-
Carattoli, A.1
Bertini, A.2
Villa, L.3
Falbo, V.4
Hopkins, K.L.5
Threlfall, E.J.6
-
6
-
-
84861904854
-
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
-
Chen L., Xiong Z., Sun L., Yang J., Jin Q. VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res. 2012, 40:D641-D645.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D641-D645
-
-
Chen, L.1
Xiong, Z.2
Sun, L.3
Yang, J.4
Jin, Q.5
-
7
-
-
35448931964
-
Molecular subtyping and genetic analysis of the enterohemolysin gene (ehxA) from Shiga toxin-producing Escherichia coli and atypical enteropathogenic E. coli
-
Cookson A.L., Bennett J., Thomson-Carter F., Attwood G.T. Molecular subtyping and genetic analysis of the enterohemolysin gene (ehxA) from Shiga toxin-producing Escherichia coli and atypical enteropathogenic E. coli. Appl. Environ. Microbiol. 2007, 73:6360-6369.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6360-6369
-
-
Cookson, A.L.1
Bennett, J.2
Thomson-Carter, F.3
Attwood, G.T.4
-
8
-
-
33748711686
-
Evidence of antibiotic resistance gene silencing in Escherichia coli
-
Enne V.I., Delsol A.A., Roe J.M., Bennett P.M. Evidence of antibiotic resistance gene silencing in Escherichia coli. Antimicrob. Agents Chemother. 2006, 50:3003-3010.
-
(2006)
Antimicrob. Agents Chemother.
, vol.50
, pp. 3003-3010
-
-
Enne, V.I.1
Delsol, A.A.2
Roe, J.M.3
Bennett, P.M.4
-
9
-
-
84899581375
-
Prevalence and diversity of enterotoxigenic Escherichia coli strains in fresh produce
-
Feng P.C.H., Reddy S.P. Prevalence and diversity of enterotoxigenic Escherichia coli strains in fresh produce. J. Food Prot. 2014, 77:820-823.
-
(2014)
J. Food Prot.
, vol.77
, pp. 820-823
-
-
Feng, P.C.H.1
Reddy, S.P.2
-
10
-
-
77953147790
-
Prevalence, characterization and clonal analysis of Escherichia coli O157:non-H7 serotypes that carry eae alleles
-
Feng P.C.H., Keys C., Lacher D., Monday S.R., Shelton D., Rozand C., Rivas M., Whittam T.S. Prevalence, characterization and clonal analysis of Escherichia coli O157:non-H7 serotypes that carry eae alleles. FEMS Microbiol. Lett. 2010, 308:62-67.
-
(2010)
FEMS Microbiol. Lett.
, vol.308
, pp. 62-67
-
-
Feng, P.C.H.1
Keys, C.2
Lacher, D.3
Monday, S.R.4
Shelton, D.5
Rozand, C.6
Rivas, M.7
Whittam, T.S.8
-
11
-
-
79951960758
-
The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30
-
Fratamico P.M., Yan X., Caprioli A., Esposito G., Needleman D.S., Pepe T., Tozzoli R., Cortesi M.L., Morabito S. The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30. Int. J. Med. Microbiol. 2011, 301:192-203.
-
(2011)
Int. J. Med. Microbiol.
, vol.301
, pp. 192-203
-
-
Fratamico, P.M.1
Yan, X.2
Caprioli, A.3
Esposito, G.4
Needleman, D.S.5
Pepe, T.6
Tozzoli, R.7
Cortesi, M.L.8
Morabito, S.9
-
12
-
-
0028335140
-
Analysis of the sequence and gene products of the transfer region of the F sex factor
-
Frost L.S., Ippen-Ihler K., Skurray R.A. Analysis of the sequence and gene products of the transfer region of the F sex factor. Microbiol. Rev. 1994, 58:162-210.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 162-210
-
-
Frost, L.S.1
Ippen-Ihler, K.2
Skurray, R.A.3
-
13
-
-
77953511299
-
Plasmid double locus sequence typing for IncHI2 plasmids, a subtyping scheme for the characterization of IncHI2 plasmids carrying extended-spectrum beta-lactamase and quinolone resistance genes
-
Garcia-Fernandez A., Carattoli A. Plasmid double locus sequence typing for IncHI2 plasmids, a subtyping scheme for the characterization of IncHI2 plasmids carrying extended-spectrum beta-lactamase and quinolone resistance genes. J. Antimicrob. Chemother. 2010, 65:1155-1161.
-
(2010)
J. Antimicrob. Chemother.
, vol.65
, pp. 1155-1161
-
-
Garcia-Fernandez, A.1
Carattoli, A.2
-
14
-
-
7244248958
-
The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics
-
Gilmour M.W., Thomson N.R., Sanders M., Parkhill J., Taylor D.E. The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmids 2004, 52:182-202.
-
(2004)
Plasmids
, vol.52
, pp. 182-202
-
-
Gilmour, M.W.1
Thomson, N.R.2
Sanders, M.3
Parkhill, J.4
Taylor, D.E.5
-
15
-
-
71449086126
-
Pathogenomics of the virulence plasmids of Escherichia coli
-
Johnson T.J., Nolan L.K. Pathogenomics of the virulence plasmids of Escherichia coli. Microbiol. Mol. Biol. Rev. 2009, 73:750-774.
-
(2009)
Microbiol. Mol. Biol. Rev.
, vol.73
, pp. 750-774
-
-
Johnson, T.J.1
Nolan, L.K.2
-
16
-
-
33750588439
-
Complete DNA sequence, comparative genomics, and prevalence of an IncHI2 plasmid occurring among extraintestinal pathogenic Escherichia coli isolates
-
Johnson T.J., Wannemeuhler Y.M., Scaccianoce J.A., Johnson S.J., Nolan L.K. Complete DNA sequence, comparative genomics, and prevalence of an IncHI2 plasmid occurring among extraintestinal pathogenic Escherichia coli isolates. Antimicrob. Agents Chemother. 2006, 50:3929-3933.
-
(2006)
Antimicrob. Agents Chemother.
, vol.50
, pp. 3929-3933
-
-
Johnson, T.J.1
Wannemeuhler, Y.M.2
Scaccianoce, J.A.3
Johnson, S.J.4
Nolan, L.K.5
-
17
-
-
33947388397
-
Plasmid replicon typing of commensal and pathogenic Escherichia coli isolates
-
Johnson T.J., Wannemuehler Y.M., Johnson S.J., Logue C.M., White D.G., Doetkott C., Nolan L.K. Plasmid replicon typing of commensal and pathogenic Escherichia coli isolates. Appl. Environ. Microbiol. 2007, 73:1976-1983.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1976-1983
-
-
Johnson, T.J.1
Wannemuehler, Y.M.2
Johnson, S.J.3
Logue, C.M.4
White, D.G.5
Doetkott, C.6
Nolan, L.K.7
-
18
-
-
0035008965
-
Sorbitol-fermenting, Shiga toxin-producing Escherichia coli O157:H- strains: epidemiology, phenotype and molecular characteristics and microbiological diagnosis
-
Karch H., Bielazewska M. Sorbitol-fermenting, Shiga toxin-producing Escherichia coli O157:H- strains: epidemiology, phenotype and molecular characteristics and microbiological diagnosis. J. Clin. Microbiol. 2001, 39:2043-2049.
-
(2001)
J. Clin. Microbiol.
, vol.39
, pp. 2043-2049
-
-
Karch, H.1
Bielazewska, M.2
-
19
-
-
33846886532
-
Paa, originally identified in attaching and effacing Escherichia coli, is also associated with enterotoxigenic E. coli
-
Leclerc S., Boerlin P., Gyles C., Dubreuil J.D., Mourez M., Fairbrother J.M., Harel J. paa, originally identified in attaching and effacing Escherichia coli, is also associated with enterotoxigenic E. coli. Res. Microbiol. 2007, 158:97-104.
-
(2007)
Res. Microbiol.
, vol.158
, pp. 97-104
-
-
Leclerc, S.1
Boerlin, P.2
Gyles, C.3
Dubreuil, J.D.4
Mourez, M.5
Fairbrother, J.M.6
Harel, J.7
-
20
-
-
58149183697
-
ARDB-antibiotic resistance genes database
-
Liu B., Pop M. ARDB-antibiotic resistance genes database. Nucleic Acids Res. 2009, 37:D443-D447.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D443-D447
-
-
Liu, B.1
Pop, M.2
-
21
-
-
0032574019
-
Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak
-
Machino K., Ishii K., Yasunaga T., Hattori M., Yokoyama K., Yutsudo C., Kubota Y., Yamaichi Y., Iida T., Yamamoto K., Honda T., Han C.-G., Ohtsubo E., Kasamtsu M., Hayashi T., Kuhara S., Shinagawa H. Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak. DNA Res. 1998, 5:1-9.
-
(1998)
DNA Res.
, vol.5
, pp. 1-9
-
-
Machino, K.1
Ishii, K.2
Yasunaga, T.3
Hattori, M.4
Yokoyama, K.5
Yutsudo, C.6
Kubota, Y.7
Yamaichi, Y.8
Iida, T.9
Yamamoto, K.10
Honda, T.11
Han, C.-G.12
Ohtsubo, E.13
Kasamtsu, M.14
Hayashi, T.15
Kuhara, S.16
Shinagawa, H.17
-
22
-
-
57649228983
-
Replicon typing of plasmids in Escherichia coli producing extended-spectrum beta-lactamases
-
Marcade G., Deschamps C., Boyd A., Gautier V., Picard B., Branger C., Denamur E., Arlet G. Replicon typing of plasmids in Escherichia coli producing extended-spectrum beta-lactamases. J. Antimicrob. Chemother. 2009, 63:67-71.
-
(2009)
J. Antimicrob. Chemother.
, vol.63
, pp. 67-71
-
-
Marcade, G.1
Deschamps, C.2
Boyd, A.3
Gautier, V.4
Picard, B.5
Branger, C.6
Denamur, E.7
Arlet, G.8
-
23
-
-
0032505655
-
Escherichia coli O157: H7
-
Mead P.S., Griffin P.M. Escherichia coli O157: H7. Lancet 1998, 352:1207-1212.
-
(1998)
Lancet
, vol.352
, pp. 1207-1212
-
-
Mead, P.S.1
Griffin, P.M.2
-
24
-
-
58849136299
-
Full sequence and comparative analysis of the plasmid pAPEC-1 of avian pathogenic E. coli χ7122 (O78:K80:H9)
-
Mellata M., Touchman J.W., Curtiss R. Full sequence and comparative analysis of the plasmid pAPEC-1 of avian pathogenic E. coli χ7122 (O78:K80:H9). PLoS 2009, 4(1).
-
(2009)
PLoS
, vol.4
, Issue.1
-
-
Mellata, M.1
Touchman, J.W.2
Curtiss, R.3
-
25
-
-
57249105124
-
Aggressive assembly of pyrosequencing reads with mates
-
Miller J.R., Delcher A.L., Koren S., Venter E., Walenz B.P., Brownley A., Johnson J., Li K., Mobarry C., Sutton G. Aggressive assembly of pyrosequencing reads with mates. Bioinformatics 2008, 24:2818-2824.
-
(2008)
Bioinformatics
, vol.24
, pp. 2818-2824
-
-
Miller, J.R.1
Delcher, A.L.2
Koren, S.3
Venter, E.4
Walenz, B.P.5
Brownley, A.6
Johnson, J.7
Li, K.8
Mobarry, C.9
Sutton, G.10
-
26
-
-
0022261993
-
TraT gene sequences, serum resistance and pathogenicity-related factors in clinical isolates of Escherichia coli and other Gram-negative bacteria
-
Montenegro M.A., Bitter-Suermann D., Timmis J.K., Agüero M.E., Cabello F.C., Sanyal S.C., Timmis K.N. TraT gene sequences, serum resistance and pathogenicity-related factors in clinical isolates of Escherichia coli and other Gram-negative bacteria. J. Gen. Microbiol. 1985, 131:1511-1521.
-
(1985)
J. Gen. Microbiol.
, vol.131
, pp. 1511-1521
-
-
Montenegro, M.A.1
Bitter-Suermann, D.2
Timmis, J.K.3
Agüero, M.E.4
Cabello, F.C.5
Sanyal, S.C.6
Timmis, K.N.7
-
27
-
-
0035945586
-
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
-
Perna N.T., Plunkett G., Burland V., Mau B., Glasner J.D., Rose D.J., Mayhew G.F., Evans P.S., Gregor J., Kirkpatrick H.A., Posfai G., Hackett J., Klink S., Boutin A., Shao Y., Miller L., Grotbeck E.J., Davis N.W., Lim A., Dimalanta E.T., Potamousis K.D., Apodaca J., Anantharaman T.S., Lin J., Yen G., Schwartz D.C., Welch R.A., Blattner F.R. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature 2001, 409:529-533.
-
(2001)
Nature
, vol.409
, pp. 529-533
-
-
Perna, N.T.1
Plunkett, G.2
Burland, V.3
Mau, B.4
Glasner, J.D.5
Rose, D.J.6
Mayhew, G.F.7
Evans, P.S.8
Gregor, J.9
Kirkpatrick, H.A.10
Posfai, G.11
Hackett, J.12
Klink, S.13
Boutin, A.14
Shao, Y.15
Miller, L.16
Grotbeck, E.J.17
Davis, N.W.18
Lim, A.19
Dimalanta, E.T.20
Potamousis, K.D.21
Apodaca, J.22
Anantharaman, T.S.23
Lin, J.24
Yen, G.25
Schwartz, D.C.26
Welch, R.A.27
Blattner, F.R.28
more..
-
28
-
-
15244348050
-
Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome
-
Tarr P.I., Gordon C.A., Chandler W.L. Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome. Lancet 2005, 365:1073-1086.
-
(2005)
Lancet
, vol.365
, pp. 1073-1086
-
-
Tarr, P.I.1
Gordon, C.A.2
Chandler, W.L.3
-
29
-
-
0025994632
-
Colicin V virulence plasmids
-
Waters V.L., Crosa J.H. Colicin V virulence plasmids. Microbiol. Rev. 1991, 55:437-450.
-
(1991)
Microbiol. Rev.
, vol.55
, pp. 437-450
-
-
Waters, V.L.1
Crosa, J.H.2
-
30
-
-
0034459766
-
Plasmid encoded enterotoxin (pet) gene in enteroaggregative Eshcherichia coli isolated from sporadic diarrhea cases
-
Yamazaki M., Inuzuka K., Matsui H., Sakae K., Suzuki Y., Miyazaki Y., Ito K. Plasmid encoded enterotoxin (pet) gene in enteroaggregative Eshcherichia coli isolated from sporadic diarrhea cases. Jpn. J. Infect. Dis. 2000, 53:248-249.
-
(2000)
Jpn. J. Infect. Dis.
, vol.53
, pp. 248-249
-
-
Yamazaki, M.1
Inuzuka, K.2
Matsui, H.3
Sakae, K.4
Suzuki, Y.5
Miyazaki, Y.6
Ito, K.7
-
31
-
-
84861750282
-
DNA sequence and analysis of a 90.1-kb plasmid in Shiga toxin-producing Escherichia coli (STEC) O145:NM 83-75
-
Yan X., Fratamico P.M., Needleman D.S., Bayles D.O. DNA sequence and analysis of a 90.1-kb plasmid in Shiga toxin-producing Escherichia coli (STEC) O145:NM 83-75. Plasmids 2012, 68:25-32.
-
(2012)
Plasmids
, vol.68
, pp. 25-32
-
-
Yan, X.1
Fratamico, P.M.2
Needleman, D.S.3
Bayles, D.O.4
|