Corrigendum: Comparative transcriptomic analysis uncovers the complex genetic network for resistance to Sclerotinia sclerotiorum in Brassica napus (Scientific Reports (2016) 6 (19007) DOI: 10.1038/srep19007);Comparative transcriptomic analysis uncovers the complex genetic network for resistance to Sclerotinia sclerotiorum in Brassica napus

Scientific Reports

Volumn 6, Issue , 2016, Pages

  Wu, Jian ^a   Zhao, Qing ^a   Yang, Qingyong ^a   Liu, Han ^a   Li, Qingyuan ^a   Yi, Xinqi ^a   Cheng, Yan ^a   Guo, Liang ^a   Fan, Chuchuan ^a   Zhou, Yongming ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOPENTANE DERIVATIVE; ETHYLENE; ETHYLENE DERIVATIVE; GLUCOSINOLATE; JASMONIC ACID; OXYLIPIN; PLANT PROTEIN; TRANSCRIPTOME;

ASCOMYCETES; COMPARATIVE STUDY; DISEASE RESISTANCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE ONTOLOGY; GENE REGULATORY NETWORK; GENETICS; IMMUNOLOGY; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PATHOGENICITY; PHYSIOLOGY; PLANT DISEASE; PLANT LEAF; PLANT STEM; RAPESEED; SIGNAL TRANSDUCTION; TRANSGENIC PLANT;

ASCOMYCOTA; BRASSICA NAPUS; CYCLOPENTANES; DISEASE RESISTANCE; ETHYLENES; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENE ONTOLOGY; GENE REGULATORY NETWORKS; GLUCOSINOLATES; MAP KINASE SIGNALING SYSTEM; MOLECULAR SEQUENCE ANNOTATION; OXYLIPINS; PLANT DISEASES; PLANT LEAVES; PLANT PROTEINS; PLANT STEMS; PLANTS, GENETICALLY MODIFIED; TRANSCRIPTOME;

EID: 84953776520     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep42829     Document Type: Erratum

References (56)

1. Boland, G. & Hall, R. Index of plant hosts of Sclerotinia sclerotiorum. Can J Plant Pathol 16, 93-108 (1994).
2. Bolton, M. D., Thomma, B. P. & Nelson, B. D. Sclerotinia sclerotiorum (Lib.) de Bary: biology and molecular traits of a cosmopolitan pathogen. Mol Plant Pathol 7, 1-16 (2006).
3. Barbetti, M. et al. Comparative genotype reactions to Sclerotinia sclerotiorum within breeding populations of Brassica napus and B. juncea from India and China. Euphytica 197, 47-59 (2014).
4. Saharan, G. & Mehta, D.N. Sclerotinia Diseases of Crop Plants: Biology, Ecology and Disease Management. (Springer, 2008).
5. Aggarwal, R., Kumar, A. & Thakur, H. Effect of sclerotinia rot on oil quality in low erucic acid cultivars of rapeseed. Cruciferae Newsletter 19, 103-104 (1997).
6. Bastien, M., Sonah, H. & Belzile, F. Genome wide association mapping of resistance in soybean with a genotyping-by-sequencing approach. Plant Genome 7, 1-13 (2014).
7. Wu, J. et al. Identification of QTLs for resistance to Sclerotinia stem rot and BnaC.IGMT5.a as a candidate gene of the major resistant QTL SRC6 In Brassica napus. PloS one 8, e67740 (2013).
8. Jones, J. D. & Dangl, J. L. The plant immune system. Nature 444, 323-329 (2006).
9. Dodds, P. N. & Rathjen, J. P. Plant immunity: towards an integrated view of plant-pathogen interactions. Nat Rev Genet 11, 539-548 (2010).
10. Asai, T. et al. MAP kinase signalling cascade in Arabidopsis innate immunity. Nature 415, 977-983 (2002).
11. Eulgem, T. & Somssich, I. E. Networks of WRKY transcription factors in defense signaling. Curr Opin Plant Biol 10, 366-371 (2007).
12. Wang, Z. et al. Overexpression of Brassica napus MPK4 enhances resistance to Sclerotinia sclerotiorum in oilseed rape. Mol Plant Microbe In 22, 235-244 (2009).
13. Wang, Z. et al. Overexpression of BnWRKY33 in oilseed rape enhances resistance to Sclerotinia sclerotiorum. Mol Plant Pathol 15, 677-689 (2014).
14. Chen, X. T. et al. Overexpression of AtWRKY28 and AtWRKY75 In Arabidopsis enhances resistance to oxalic acid and Sclerotinia sclerotiorum. Plant Cell Rep 32, 1589-1599 (2013).
15. Sun, Y. et al. Identification and functional analysis of mitogen-activated protein kinase kinase kinase (MAPKKK) genes in canola (Brassica napus L.). J Exp Bot 65, 2171-2188 (2014).
16. Liang, W. W. et al. Identification and analysis of MKK and MPK gene families in canola (Brassica napus L.). BMC Genomics 14, 392 (2013).
17. Yang, B., Jiang, Y., Rahman, M. H., Deyholos, M. K. & Kav, N. N. V. Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments. BMC Plant Biol 9, 68 (2009).
18. Bari, R. & Jones, J. D. Role of plant hormones in plant defence responses. Plant Mol Biol 69, 473-488 (2009).
19. Pieterse, C.M. et al. Hormonal modulation of plant immunity. Annu Rev Cell Devl Bi 28, 489-521 (2012).
20. Yang, B., Srivastava, S., Deyholos, M. K. & Kav, N. N. V. Transcriptional profiling of canola (Brassica napus L.) responses to the fungal pathogen Sclerotinia sclerotiorum. Plant Sci 173, 156-171 (2007).
21. Zhao, J. W. et al. Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus. Planta 227, 13-24 (2007).
22. Zhao, J. W. et al. Patterns of differential gene expression in Brassica napus cultivars infected with Sclerotinia sclerotiorum. Mol Plant Pathol 10, 635-649 (2009).
23. Wang, Z. et al. Defense to Sclerotinia sclerotiorum in oilseed rape is associated with the sequential activations of salicylic acid signaling and jasmonic acid signaling. Plant Sci 184, 75-82 (2011).
24. Nováková, M., Šašek, V., Dobrev, P. I., Valentová, O. & Burketová, L. Plant hormones in defense response of Brassica napus to Sclerotinia sclerotiorum- Reassessing the role of salicylic acid in the interaction with a necrotroph. Plant Physiol Bioch 80, 308-317 (2014).
25. Guo, X. M. & Stotz, H. U. Defense against Sclerotinia sclerotiorum in Arabidopsis is dependent on jasmonic acid, salicylic acid, and ethylene signaling. Mol Plant Microbe In 20, 1384-1395 (2007).
26. Perchepied, L. et al. Nitric oxide participates in the complex interplay of defense-related signaling pathways controlling disease resistance to Sclerotinia sclerotiorum in Arabidopsis thaliana. Mol Plant Microbe In 23, 846-860 (2010).
27. Yang, B., Rahman, M. H., Liang, Y., Shah, S. & Kav, N. N. V. Characterization of defense signaling pathways of Brassica napus and Brassica carinata in response to Sclerotinia sclerotiorum challenge. Plant Mol Biol Rep 28, 253-263 (2010).
28. Grison, R. et al. Field tolerance to fungal pathogens of Brassica napus constitutively expressing a chimeric chitinase gene. Nat Biotechnol 14, 643-646 (1996).
29. Bashi, Z. D., Rimmer, S. R., Khachatourians, G. G. & Hegedus, D. D. Brassica napus polygalacturonase inhibitor proteins inhibit Sclerotinia sclerotiorum polygalacturonase enzymatic and necrotizing activities and delay symptoms in transgenic plants. Can J Microbiol 59, 79-86 (2012).
30. Stotz, H. U. et al. Role of camalexin, indole glucosinolates, and side chain modification of glucosinolate-derived isothiocyanates in defense of Arabidopsis against Sclerotinia sclerotiorum. Plant J 67, 81-93 (2011).
31. Eynck, C., Séguin-Swartz, G., Clarke, W. E. & Parkin, I. A. P. Monolignol biosynthesis is associated with resistance to Sclerotinia sclerotiorum in Camelina sativa. Mol Plant Pathol 13, 887-899 (2012).
32. Chalhoub, B. et al. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science 345, 950-953 (2014).
33. Cai, G. Q. et al. A complex recombination pattern in the genome of allotetraploid Brassica napus as revealed by a high-density genetic map. PloS One 9, e109910 (2014).
34. Wang, Z., Gerstein M. & Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10, 57-63 (2009).
35. Amselem, J. et al. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet 7, e1002230 (2011).
36. Sturn, A., Quackenbush, J. & Trajanoski, Z. Genesis: cluster analysis of microarray data. Bioinformatics 18, 207-208 (2002).
37. Conesa, A. et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676 (2005).
38. Mengiste, T. Plant immunity to necrotrophs. Annu Rev Phytopathol 50, 267-294 (2012).
39. Ichimura, K. et al. Mitogen-activated protein kinase cascades in plants: a new nomenclature. Trends Plant Sci 7, 301-308 (2002).
40. Li, J., Brader, G. & Palva, E. T. The WRKY70 transcription factor: a node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense. Plant Cell 16, 319-331 (2004).
41. De Lorenzo, G. & Ferrari, S. Polygalacturonase-inhibiting proteins in defense against phytopathogenic fungi. Curr Opin Plant Biol 5, 295-299 (2002).
42. Staal, J., Kaliff, M., Dewaele, E., Persson M. & Dixelius C. RLM3, a TIR domain encoding gene involved in broad-range immunity of Arabidopsis to necrotrophic fungal pathogens. Plant J 55, 188-200 (2008).
43. Zuo, W. L. et al. A maize wall-associated kinase confers quantitative resistance to head smut. Nat Genet 47, 151-157 (2014).
44. Morris, E.R. & Walker, J. C. Receptor-like protein kinases: the keys to response. Curr Opin Plant Biol 6, 339-342 (2003).
45. Kim, K. H. et al. RNA-Seq analysis of a soybean near-isogenic line carrying bacterial leaf pustule-resistant and -susceptible alleles. DNA Res 18, 483-497 (2011).
46. Glazebrook, J. Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annu Rev Phytopathol 43, 205-227 (2005).
47. Patel, R. K. & Jain, M. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PloS One 7, e30619 (2012).
48. Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
49. Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28, 511-515 (2010).
50. Jones, P. et al. InterProScan 5: genome-scale protein function classification. Bioinformatics 30, 1236-1240 (2014).
51. Supek, F., Bošnjak, M., Škunca, N. & Šmuc, T. REVIGO summarizes and visualizes long lists of gene ontology terms. PloS One 6, e21800 (2011).
52. Cheng, Y. et al. Downregulation of multiple CDK inhibitor ICK/KRP genes upregulates the E2F pathway and increases cell proliferation, and organ and seed sizes in Arabidopsis. Plant J 75, 642-655 (2013).
53. Czechowski, T., Stitt, M., Altmann, T., Udvardi, M. K. & Scheible, W.-R. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139, 5-17 (2005).
54. Wathelet, J.-P., Iori, R., Leoni, O., Quinsac, A. & Palmieri, S. Guidelines for glucosinolate analysis in green tissues used for biofumigation. Agroindustria 3, 257-266 (2004).
55. Feng, J. et al. Characterization of metabolite quantitative trait loci and metabolic networks that control glucosinolate concentration in the seeds and leaves of Brassica napus. New Phytol 193, 96-108 (2012).
56. Liu, S. Y. et al. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Nat Commun 5, 3930 (2014).