-
1
-
-
84914150658
-
Global epidemiology and genotype distribution of the hepatitis C virus infection
-
Gower E, Estes C, Blach S, Razavi-Shearer K, Razavi H, (2014) Global epidemiology and genotype distribution of the hepatitis C virus infection. J Hepatol 61: S45–57. doi: 10.1016/j.jhep.2014.07.027 25086286
-
(2014)
J Hepatol
, vol.61
, pp. S45-57
-
-
Gower, E.1
Estes, C.2
Blach, S.3
Razavi-Shearer, K.4
Razavi, H.5
-
2
-
-
0030765662
-
Seroprevalence of GB virus C and persistence of RNA and antibody
-
Gutierrez RA, Dawson GJ, Knigge MF, Melvin SL, Heynen CA, et al. (1997) Seroprevalence of GB virus C and persistence of RNA and antibody. J Med Virol 53: 167–173. 9334929
-
(1997)
J Med Virol
, vol.53
, pp. 167-173
-
-
Gutierrez, R.A.1
Dawson, G.J.2
Knigge, M.F.3
Melvin, S.L.4
Heynen, C.A.5
-
3
-
-
70350020284
-
GB virus type C interactions with HIV: the role of envelope glycoproteins
-
Mohr EL, Stapleton JT, (2009) GB virus type C interactions with HIV: the role of envelope glycoproteins. J Viral Hepat 16: 757–768. doi: 10.1111/j.1365-2893.2009.01194.x 19758271
-
(2009)
J Viral Hepat
, vol.16
, pp. 757-768
-
-
Mohr, E.L.1
Stapleton, J.T.2
-
4
-
-
84858000676
-
GB virus C: the good boy virus?
-
Bhattarai N, Stapleton JT, (2012) GB virus C: the good boy virus? Trends Microbiol 20: 124–130. doi: 10.1016/j.tim.2012.01.004 22325031
-
(2012)
Trends Microbiol
, vol.20
, pp. 124-130
-
-
Bhattarai, N.1
Stapleton, J.T.2
-
5
-
-
0034769199
-
GB virus-C infection in patients infected with the human immunodeficiency virus
-
Tillmann HL, Manns MP, (2001) GB virus-C infection in patients infected with the human immunodeficiency virus. Antiviral Res 52: 83–90. 11672817
-
(2001)
Antiviral Res
, vol.52
, pp. 83-90
-
-
Tillmann, H.L.1
Manns, M.P.2
-
6
-
-
84921688418
-
GB virus C coinfections in west African Ebola patients
-
Lauck M, Bailey AL, Andersen KG, Goldberg TL, Sabeti PC, et al. (2015) GB virus C coinfections in west African Ebola patients. J Virol 89: 2425–2429. doi: 10.1128/JVI.02752-14 25473056
-
(2015)
J Virol
, vol.89
, pp. 2425-2429
-
-
Lauck, M.1
Bailey, A.L.2
Andersen, K.G.3
Goldberg, T.L.4
Sabeti, P.C.5
-
7
-
-
84876022936
-
Identification of a previously undescribed divergent virus from the Flaviviridae family in an outbreak of equine serum hepatitis
-
Chandriani S, Skewes-Cox P, Zhong W, Ganem DE, Divers TJ, et al. (2013) Identification of a previously undescribed divergent virus from the Flaviviridae family in an outbreak of equine serum hepatitis. Proc Natl Acad Sci U S A 110: E1407–1415. doi: 10.1073/pnas.1219217110 23509292
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E1407-1415
-
-
Chandriani, S.1
Skewes-Cox, P.2
Zhong, W.3
Ganem, D.E.4
Divers, T.J.5
-
8
-
-
84929649287
-
Highly divergent hepaciviruses from African cattle
-
Corman VM, Grundhoff A, Baechlein C, Fischer N, Gmyl A, et al. (2015) Highly divergent hepaciviruses from African cattle. J Virol 89: 5876–5882. doi: 10.1128/JVI.00393-15 25787289
-
(2015)
J Virol
, vol.89
, pp. 5876-5882
-
-
Corman, V.M.1
Grundhoff, A.2
Baechlein, C.3
Fischer, N.4
Gmyl, A.5
-
9
-
-
84879531467
-
Evidence for novel hepaciviruses in rodents
-
Drexler JF, Corman VM, Muller MA, Lukashev AN, Gmyl A, et al. (2013) Evidence for novel hepaciviruses in rodents. PLoS Pathog 9: e1003438. doi: 10.1371/journal.ppat.1003438 23818848
-
(2013)
PLoS Pathog
, vol.9
, pp. e1003438
-
-
Drexler, J.F.1
Corman, V.M.2
Muller, M.A.3
Lukashev, A.N.4
Gmyl, A.5
-
10
-
-
84878547582
-
Identification of a pegivirus (GB virus-like virus) that infects horses
-
Kapoor A, Simmonds P, Cullen JM, Scheel TK, Medina JL, et al. (2013) Identification of a pegivirus (GB virus-like virus) that infects horses. J Virol 87: 7185–7190. doi: 10.1128/JVI.00324-13 23596285
-
(2013)
J Virol
, vol.87
, pp. 7185-7190
-
-
Kapoor, A.1
Simmonds, P.2
Cullen, J.M.3
Scheel, T.K.4
Medina, J.L.5
-
11
-
-
84880050912
-
Identification of rodent homologs of hepatitis C virus and pegiviruses
-
Kapoor A, Simmonds P, Scheel TK, Hjelle B, Cullen JM, et al. (2013) Identification of rodent homologs of hepatitis C virus and pegiviruses. MBio 4: e00216–00213. doi: 10.1128/mBio.00216-13 23572554
-
(2013)
MBio
, vol.4
, pp. e00213-00216
-
-
Kapoor, A.1
Simmonds, P.2
Scheel, T.K.3
Hjelle, B.4
Cullen, J.M.5
-
12
-
-
84904429749
-
Viraemic frequencies and seroprevalence of non-primate hepacivirus and equine pegiviruses in horses and other mammalian species
-
Lyons S, Kapoor A, Schneider BS, Wolfe ND, Culshaw G, et al. (2014) Viraemic frequencies and seroprevalence of non-primate hepacivirus and equine pegiviruses in horses and other mammalian species. J Gen Virol 95: 1701–1711. doi: 10.1099/vir.0.065094-0 24814924
-
(2014)
J Gen Virol
, vol.95
, pp. 1701-1711
-
-
Lyons, S.1
Kapoor, A.2
Schneider, B.S.3
Wolfe, N.D.4
Culshaw, G.5
-
13
-
-
84877859722
-
Bats are a major natural reservoir for hepaciviruses and pegiviruses
-
Quan PL, Firth C, Conte JM, Williams SH, Zambrana-Torrelio CM, et al. (2013) Bats are a major natural reservoir for hepaciviruses and pegiviruses. Proc Natl Acad Sci U S A 110: 8194–8199. doi: 10.1073/pnas.1303037110 23610427
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 8194-8199
-
-
Quan, P.L.1
Firth, C.2
Conte, J.M.3
Williams, S.H.4
Zambrana-Torrelio, C.M.5
-
14
-
-
0029152870
-
Origin of GB-hepatitis viruses
-
Schlauder GG, Pilot-Matias TJ, Gabriel GS, Simons JN, Muerhoff AS, et al. (1995) Origin of GB-hepatitis viruses. Lancet 346: 447–448.
-
(1995)
Lancet
, vol.346
, pp. 447-448
-
-
Schlauder, G.G.1
Pilot-Matias, T.J.2
Gabriel, G.S.3
Simons, J.N.4
Muerhoff, A.S.5
-
15
-
-
84938350526
-
Tropism of Human Pegivirus (formerly known as GB virus C/Hepatitis G virus)and host immunomodulation: insights into a highly successful viral infection
-
Chivero ET, Stapleton JT, (2015) Tropism of Human Pegivirus (formerly known as GB virus C/Hepatitis G virus)and host immunomodulation: insights into a highly successful viral infection. J Gen Virol.
-
(2015)
J Gen Virol
-
-
Chivero, E.T.1
Stapleton, J.T.2
-
16
-
-
79251486681
-
The GB viruses: a review and proposed classification of GBV-A, GBV-C (HGV), and GBV-D in genus Pegivirus within the family Flaviviridae
-
Stapleton JT, Foung S, Muerhoff AS, Bukh J, Simmonds P, (2011) The GB viruses: a review and proposed classification of GBV-A, GBV-C (HGV), and GBV-D in genus Pegivirus within the family Flaviviridae. J Gen Virol 92: 233–246. doi: 10.1099/vir.0.027490-0 21084497
-
(2011)
J Gen Virol
, vol.92
, pp. 233-246
-
-
Stapleton, J.T.1
Foung, S.2
Muerhoff, A.S.3
Bukh, J.4
Simmonds, P.5
-
17
-
-
84882860961
-
Viral pathogen discovery
-
Chiu CY, (2013) Viral pathogen discovery. Curr Opin Microbiol 16: 468–478. doi: 10.1016/j.mib.2013.05.001 23725672
-
(2013)
Curr Opin Microbiol
, vol.16
, pp. 468-478
-
-
Chiu, C.Y.1
-
18
-
-
84904255806
-
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples
-
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, et al. (2014) A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Res 24: 1180–1192. doi: 10.1101/gr.171934.113 24899342
-
(2014)
Genome Res
, vol.24
, pp. 1180-1192
-
-
Naccache, S.N.1
Federman, S.2
Veeraraghavan, N.3
Zaharia, M.4
Lee, D.5
-
19
-
-
84883227372
-
PRICE: software for the targeted assembly of components of (Meta) genomic sequence data
-
Ruby JG, Bellare P, Derisi JL, (2013) PRICE: software for the targeted assembly of components of (Meta) genomic sequence data. G3 (Bethesda) 3: 865–880.
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 865-880
-
-
Ruby, J.G.1
Bellare, P.2
Derisi, J.L.3
-
20
-
-
79952601486
-
Rapid amplification of cDNA ends (RACE)
-
Yeku O, Frohman MA, (2011) Rapid amplification of cDNA ends (RACE). Methods Mol Biol 703: 107–122. doi: 10.1007/978-1-59745-248-9_8 21125486
-
(2011)
Methods Mol Biol
, vol.703
, pp. 107-122
-
-
Yeku, O.1
Frohman, M.A.2
-
21
-
-
13244300646
-
Molecular cloning and disease association of hepatitis G virus: a transfusion-transmissible agent
-
Linnen J, Wages J, Jr.Zhang-Keck ZY, Fry KE, Krawczynski KZ, et al. (1996) Molecular cloning and disease association of hepatitis G virus: a transfusion-transmissible agent. Science 271: 505–508. 8560265
-
(1996)
Science
, vol.271
, pp. 505-508
-
-
Linnen, J.1
Wages, J.2
Zhang-Keck, Z.Y.3
Fry, K.E.4
Krawczynski, K.Z.5
-
22
-
-
0029074531
-
Isolation of novel virus-like sequences associated with human hepatitis
-
Simons JN, Leary TP, Dawson GJ, Pilot-Matias TJ, Muerhoff AS, et al. (1995) Isolation of novel virus-like sequences associated with human hepatitis. Nat Med 1: 564–569. 7585124
-
(1995)
Nat Med
, vol.1
, pp. 564-569
-
-
Simons, J.N.1
Leary, T.P.2
Dawson, G.J.3
Pilot-Matias, T.J.4
Muerhoff, A.S.5
-
23
-
-
84858994359
-
GBV-C: state of the art and future prospects
-
Giret MT, Kallas EG, (2012) GBV-C: state of the art and future prospects. Curr HIV/AIDS Rep 9: 26–33. doi: 10.1007/s11904-011-0109-1 22246585
-
(2012)
Curr HIV/AIDS Rep
, vol.9
, pp. 26-33
-
-
Giret, M.T.1
Kallas, E.G.2
-
24
-
-
79960037663
-
Frequency and genotypic distribution of GB virus C (GBV-C) among Colombian population with Hepatitis B (HBV) or Hepatitis C (HCV) infection
-
Alvarado-Mora MV, Botelho L, Nishiya A, Neto RA, Gomes-Gouvea MS, et al. (2011) Frequency and genotypic distribution of GB virus C (GBV-C) among Colombian population with Hepatitis B (HBV) or Hepatitis C (HCV) infection. Virol J 8: 345. doi: 10.1186/1743-422X-8-345 21745373
-
(2011)
Virol J
, vol.8
, pp. 345
-
-
Alvarado-Mora, M.V.1
Botelho, L.2
Nishiya, A.3
Neto, R.A.4
Gomes-Gouvea, M.S.5
-
25
-
-
79952655205
-
GB virus C infection among young, HIV-negative injection drug users with and without hepatitis C virus infection
-
Boodram B, Hershow RC, Klinzman D, Stapleton JT, (2011) GB virus C infection among young, HIV-negative injection drug users with and without hepatitis C virus infection. J Viral Hepat 18: e153–159. doi: 10.1111/j.1365-2893.2010.01350.x 20738773
-
(2011)
J Viral Hepat
, vol.18
, pp. e153-159
-
-
Boodram, B.1
Hershow, R.C.2
Klinzman, D.3
Stapleton, J.T.4
-
26
-
-
48149086927
-
The prevalence of GB virus C/hepatitis G virus RNA among healthy and HCV-infected Catalan children
-
Claret G, Noguera A, Gonzalez-Cuevas A, Garcia-Garcia JJ, Fortuny C, et al. (2008) The prevalence of GB virus C/hepatitis G virus RNA among healthy and HCV-infected Catalan children. Eur J Pediatr 167: 991–994. 17965880
-
(2008)
Eur J Pediatr
, vol.167
, pp. 991-994
-
-
Claret, G.1
Noguera, A.2
Gonzalez-Cuevas, A.3
Garcia-Garcia, J.J.4
Fortuny, C.5
-
27
-
-
79959590927
-
Prevalence and clinical significance of GB virus type C/hepatitis G virus coinfection in patients with chronic hepatitis C undergoing antiviral therapy
-
Hofer H, Aydin I, Neumueller-Guber S, Mueller C, Scherzer TM, et al. (2011) Prevalence and clinical significance of GB virus type C/hepatitis G virus coinfection in patients with chronic hepatitis C undergoing antiviral therapy. J Viral Hepat 18: 513–517. doi: 10.1111/j.1365-2893.2010.01340.x 20565572
-
(2011)
J Viral Hepat
, vol.18
, pp. 513-517
-
-
Hofer, H.1
Aydin, I.2
Neumueller-Guber, S.3
Mueller, C.4
Scherzer, T.M.5
-
28
-
-
84891906734
-
Large scale screening of human sera for HCV RNA and GBV-C RNA
-
Keys JR, Leone PA, Eron JJ, Alexander K, Brinson M, et al. (2014) Large scale screening of human sera for HCV RNA and GBV-C RNA. J Med Virol 86: 473–477. doi: 10.1002/jmv.23829 24178362
-
(2014)
J Med Virol
, vol.86
, pp. 473-477
-
-
Keys, J.R.1
Leone, P.A.2
Eron, J.J.3
Alexander, K.4
Brinson, M.5
-
29
-
-
0031975188
-
GB virus C (GBV-C) infection in patients with chronic hepatitis C. Influence on liver disease and on hepatitis virus behaviour: effect of interferon alfa therapy
-
Pawlotsky JM, Roudot-Thoraval F, Muerhoff AS, Pellerin M, Germanidis G, et al. (1998) GB virus C (GBV-C) infection in patients with chronic hepatitis C. Influence on liver disease and on hepatitis virus behaviour: effect of interferon alfa therapy. J Med Virol 54: 26–37. 9443106
-
(1998)
J Med Virol
, vol.54
, pp. 26-37
-
-
Pawlotsky, J.M.1
Roudot-Thoraval, F.2
Muerhoff, A.S.3
Pellerin, M.4
Germanidis, G.5
-
30
-
-
84928206541
-
Experimental transmission of equine hepacivirus in horses as a model for hepatitis C virus
-
Ramsay JD, Evanoff R, Wilkinson TE, Jr.Divers TJ, Knowles DP, et al. (2015) Experimental transmission of equine hepacivirus in horses as a model for hepatitis C virus. Hepatology 61: 1533–1546. doi: 10.1002/hep.27689 25580897
-
(2015)
Hepatology
, vol.61
, pp. 1533-1546
-
-
Ramsay, J.D.1
Evanoff, R.2
Wilkinson, T.E.3
Divers, T.J.4
Knowles, D.P.5
-
31
-
-
84903388741
-
Discovery and characterization of distinct simian pegiviruses in three wild African Old World monkey species
-
Sibley SD, Lauck M, Bailey AL, Hyeroba D, Tumukunde A, et al. (2014) Discovery and characterization of distinct simian pegiviruses in three wild African Old World monkey species. PLoS One 9: e98569. doi: 10.1371/journal.pone.0098569 24918769
-
(2014)
PLoS One
, vol.9
, pp. e98569
-
-
Sibley, S.D.1
Lauck, M.2
Bailey, A.L.3
Hyeroba, D.4
Tumukunde, A.5
-
32
-
-
81755174133
-
Virus evolution
-
Simmonds P, Domingo E, (2011) Virus evolution. Curr Opin Virol 1: 410–412. doi: 10.1016/j.coviro.2011.10.021 22440843
-
(2011)
Curr Opin Virol
, vol.1
, pp. 410-412
-
-
Simmonds, P.1
Domingo, E.2
-
33
-
-
0027522145
-
Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region
-
Simmonds P, Holmes EC, Cha TA, Chan SW, McOmish F, et al. (1993) Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region. J Gen Virol 74 (Pt 11): 2391–2399. 8245854
-
(1993)
J Gen Virol
, vol.74
, pp. 2391-2399
-
-
Simmonds, P.1
Holmes, E.C.2
Cha, T.A.3
Chan, S.W.4
McOmish, F.5
-
34
-
-
7444256169
-
Genetic diversity and evolution of hepatitis C virus—15 years on
-
Simmonds P, (2004) Genetic diversity and evolution of hepatitis C virus—15 years on. J Gen Virol 85: 3173–3188. 15483230
-
(2004)
J Gen Virol
, vol.85
, pp. 3173-3188
-
-
Simmonds, P.1
-
35
-
-
84876918112
-
The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick
-
Swei A, Russell BJ, Naccache SN, Kabre B, Veeraraghavan N, et al. (2013) The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick. PLoS One 8: e62083. doi: 10.1371/journal.pone.0062083 23637969
-
(2013)
PLoS One
, vol.8
, pp. e62083
-
-
Swei, A.1
Russell, B.J.2
Naccache, S.N.3
Kabre, B.4
Veeraraghavan, N.5
-
36
-
-
84866951390
-
A novel rhabdovirus associated with acute hemorrhagic fever in central Africa
-
Grard G, Fair JN, Lee D, Slikas E, Steffen I, et al. (2012) A novel rhabdovirus associated with acute hemorrhagic fever in central Africa. PLoS Pathog 8: e1002924. doi: 10.1371/journal.ppat.1002924 23028323
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002924
-
-
Grard, G.1
Fair, J.N.2
Lee, D.3
Slikas, E.4
Steffen, I.5
-
37
-
-
84855167751
-
RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data
-
Zhao Y, Tang H, Ye Y, (2012) RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinformatics 28: 125–126. doi: 10.1093/bioinformatics/btr595 22039206
-
(2012)
Bioinformatics
, vol.28
, pp. 125-126
-
-
Zhao, Y.1
Tang, H.2
Ye, Y.3
-
38
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403–410. 2231712
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
39
-
-
0022249654
-
Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide
-
Emini EA, Hughes JV, Perlow DS, Boger J, (1985) Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J Virol 55: 836–839. 2991600
-
(1985)
J Virol
, vol.55
, pp. 836-839
-
-
Emini, E.A.1
Hughes, J.V.2
Perlow, D.S.3
Boger, J.4
-
40
-
-
0023984742
-
The antigenic index: a novel algorithm for predicting antigenic determinants
-
Jameson BA, Wolf H, (1988) The antigenic index: a novel algorithm for predicting antigenic determinants. Comput Appl Biosci 4: 181–186. 2454713
-
(1988)
Comput Appl Biosci
, vol.4
, pp. 181-186
-
-
Jameson, B.A.1
Wolf, H.2
-
41
-
-
84863507534
-
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
-
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, et al. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647–1649. doi: 10.1093/bioinformatics/bts199 22543367
-
(2012)
Bioinformatics
, vol.28
, pp. 1647-1649
-
-
Kearse, M.1
Moir, R.2
Wilson, A.3
Stones-Havas, S.4
Cheung, M.5
-
42
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
Petersen TN, Brunak S, von Heijne G, Nielsen H, (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785–786. doi: 10.1038/nmeth.1701 21959131
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
43
-
-
85066357494
-
-
Gupta R, Jung E, Brunak S (2015) NetNGlyc 1.0 Server.
-
-
-
-
44
-
-
84878644998
-
Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology
-
Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, et al. (2013) Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology. EMBO J 32: 1478–1488. doi: 10.1038/emboj.2013.79 23584533
-
(2013)
EMBO J
, vol.32
, pp. 1478-1488
-
-
Steentoft, C.1
Vakhrushev, S.Y.2
Joshi, H.J.3
Kong, Y.4
Vester-Christensen, M.B.5
-
45
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357–359. doi: 10.1038/nmeth.1923 22388286
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
46
-
-
84946593499
-
Virome Analysis of Transfusion Recipients Reveals a Novel Human Virus That Shares Genomic Features with Hepaciviruses and Pegiviruses
-
Kapoor A, Kumar A, Simmonds P, Bhuva N, Singh Chauhan L, et al. (2015) Virome Analysis of Transfusion Recipients Reveals a Novel Human Virus That Shares Genomic Features with Hepaciviruses and Pegiviruses. MBio 6.
-
(2015)
MBio
, vol.6
-
-
Kapoor, A.1
Kumar, A.2
Simmonds, P.3
Bhuva, N.4
Singh Chauhan, L.5
|