-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
P.D. Adams, P.V. Afonine, G. Bunkoczi, V.B. Chen, I.W. Davis, N. Echols, J.J. Headd, L.W. Hung, G.J. Kapral, R.W. Grosse-Kunstleve, and et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallogr. D Biol. Crystallogr. 66 2010 213 221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
2
-
-
69749089007
-
An intersubunit signaling network coordinates ATP hydrolysis by m-AAA proteases
-
S. Augustin, F. Gerdes, S. Lee, F.T. Tsai, T. Langer, and T. Tatsuta An intersubunit signaling network coordinates ATP hydrolysis by m-AAA proteases Mol. Cell 35 2009 574 585
-
(2009)
Mol. Cell
, vol.35
, pp. 574-585
-
-
Augustin, S.1
Gerdes, F.2
Lee, S.3
Tsai, F.T.4
Langer, T.5
Tatsuta, T.6
-
3
-
-
0344091553
-
Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantised elastic deformational model
-
F. Beuron, T.C. Flynn, J. Ma, H. Kondo, X. Zhang, and P.S. Freemont Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantised elastic deformational model J. Mol. Biol. 327 2003 619 629
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 619-629
-
-
Beuron, F.1
Flynn, T.C.2
Ma, J.3
Kondo, H.4
Zhang, X.5
Freemont, P.S.6
-
4
-
-
84864523802
-
Structural basis for intersubunit signaling in a protein disaggregating machine
-
A.B. Biter, S. Lee, N. Sung, and F.T. Tsai Structural basis for intersubunit signaling in a protein disaggregating machine Proc. Natl. Acad. Sci. U S A 109 2012 12515 12520
-
(2012)
Proc. Natl. Acad. Sci. U S A
, vol.109
, pp. 12515-12520
-
-
Biter, A.B.1
Lee, S.2
Sung, N.3
Tsai, F.T.4
-
5
-
-
46649111025
-
Analysis of nucleotide binding to P97 reveals the properties of a tandem AAA hexameric ATPase
-
L.C. Briggs, G.S. Baldwin, N. Miyata, H. Kondo, X. Zhang, and P.S. Freemont Analysis of nucleotide binding to P97 reveals the properties of a tandem AAA hexameric ATPase J. Biol. Chem. 283 2008 13745 13752
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 13745-13752
-
-
Briggs, L.C.1
Baldwin, G.S.2
Miyata, N.3
Kondo, H.4
Zhang, X.5
Freemont, P.S.6
-
6
-
-
84904269269
-
Specific inhibition of p97/VCP ATPase and kinetic analysis demonstrate interaction between D1 and D2 ATPase domains
-
T.F. Chou, S.L. Bulfer, C.C. Weihl, K. Li, L.G. Lis, M.A. Walters, F.J. Schoenen, H.J. Lin, R.J. Deshaies, and M.R. Arkin Specific inhibition of p97/VCP ATPase and kinetic analysis demonstrate interaction between D1 and D2 ATPase domains J. Mol. Biol. 426 2014 2886 2899
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 2886-2899
-
-
Chou, T.F.1
Bulfer, S.L.2
Weihl, C.C.3
Li, K.4
Lis, L.G.5
Walters, M.A.6
Schoenen, F.J.7
Lin, H.J.8
Deshaies, R.J.9
Arkin, M.R.10
-
7
-
-
13844253945
-
Conformational changes of p97 during nucleotide hydrolysis determined by small-angle X-ray scattering
-
J.M. Davies, H. Tsuruta, A.P. May, and W.I. Weis Conformational changes of p97 during nucleotide hydrolysis determined by small-angle X-ray scattering Structure 13 2005 183 195
-
(2005)
Structure
, vol.13
, pp. 183-195
-
-
Davies, J.M.1
Tsuruta, H.2
May, A.P.3
Weis, W.I.4
-
8
-
-
42949164124
-
Improved structures of full-length p97, an AAA ATPase: Implications for mechanisms of nucleotide-dependent conformational change
-
J.M. Davies, A.T. Brunger, and W.I. Weis Improved structures of full-length p97, an AAA ATPase: implications for mechanisms of nucleotide-dependent conformational change Structure 16 2008 715 726
-
(2008)
Structure
, vol.16
, pp. 715-726
-
-
Davies, J.M.1
Brunger, A.T.2
Weis, W.I.3
-
9
-
-
0141507032
-
Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains
-
B. DeLaBarre, and A.T. Brunger Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains Nat. Struct. Biol. 10 2003 856 863
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 856-863
-
-
DeLaBarre, B.1
Brunger, A.T.2
-
11
-
-
33745041480
-
Evolutionary relationships and structural mechanisms of AAA+ proteins
-
J.P. Erzberger, and J.M. Berger Evolutionary relationships and structural mechanisms of AAA+ proteins Annu. Rev. Biophys. Biomol. Struct. 35 2006 93 114
-
(2006)
Annu. Rev. Biophys. Biomol. Struct.
, vol.35
, pp. 93-114
-
-
Erzberger, J.P.1
Berger, J.M.2
-
12
-
-
75349101096
-
Structural and functional implications of phosphorylation and acetylation in the regulation of the AAA+ protein p97
-
C.A. Ewens, P. Kloppsteck, A. Forster, X. Zhang, and P.S. Freemont Structural and functional implications of phosphorylation and acetylation in the regulation of the AAA+ protein p97 Biochem. Cell Biol. 88 2010 41 48
-
(2010)
Biochem. Cell Biol.
, vol.88
, pp. 41-48
-
-
Ewens, C.A.1
Kloppsteck, P.2
Forster, A.3
Zhang, X.4
Freemont, P.S.5
-
13
-
-
84901603352
-
A structural analysis of the AAA+ domains in Saccharomyces cerevisiae cytoplasmic dynein
-
E.S. Gleave, H. Schmidt, and A.P. Carter A structural analysis of the AAA+ domains in Saccharomyces cerevisiae cytoplasmic dynein J. Struct. Biol. 186 2014 367 375
-
(2014)
J. Struct. Biol.
, vol.186
, pp. 367-375
-
-
Gleave, E.S.1
Schmidt, H.2
Carter, A.P.3
-
14
-
-
79958134700
-
Hierarchical binding of cofactors to the AAA ATPase p97
-
P. Hänzelmann, A. Buchberger, and H. Schindelin Hierarchical binding of cofactors to the AAA ATPase p97 Structure 19 2011 833 843
-
(2011)
Structure
, vol.19
, pp. 833-843
-
-
Hänzelmann, P.1
Buchberger, A.2
Schindelin, H.3
-
16
-
-
21244480104
-
Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation
-
J. Hinnerwisch, W.A. Fenton, K.J. Furtak, G.W. Farr, and A.L. Horwich Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation Cell 121 2005 1029 1041
-
(2005)
Cell
, vol.121
, pp. 1029-1041
-
-
Hinnerwisch, J.1
Fenton, W.A.2
Furtak, K.J.3
Farr, G.W.4
Horwich, A.L.5
-
17
-
-
84862574175
-
Dynamic flexibility of the ATPase p97 is important for its interprotomer motion transmission
-
C. Huang, G. Li, and W.J. Lennarz Dynamic flexibility of the ATPase p97 is important for its interprotomer motion transmission Proc. Natl. Acad. Sci. U S A 109 2012 9792 9797
-
(2012)
Proc. Natl. Acad. Sci. U S A
, vol.109
, pp. 9792-9797
-
-
Huang, C.1
Li, G.2
Lennarz, W.J.3
-
18
-
-
0344983310
-
The crystal structure of murine p97/VCP at 3.6A
-
T. Huyton, V.E. Pye, L.C. Briggs, T.C. Flynn, F. Beuron, H. Kondo, J. Ma, X. Zhang, and P.S. Freemont The crystal structure of murine p97/VCP at 3.6A J. Struct. Biol. 144 2003 337 348
-
(2003)
J. Struct. Biol.
, vol.144
, pp. 337-348
-
-
Huyton, T.1
Pye, V.E.2
Briggs, L.C.3
Flynn, T.C.4
Beuron, F.5
Kondo, H.6
Ma, J.7
Zhang, X.8
Freemont, P.S.9
-
20
-
-
84855230073
-
The power of AAA-ATPases on the road of pre-60S ribosome maturation-molecular machines that strip pre-ribosomal particles
-
D. Kressler, E. Hurt, H. Bergler, and J. Bassler The power of AAA-ATPases on the road of pre-60S ribosome maturation-molecular machines that strip pre-ribosomal particles Biochim. Biophys. Acta 1823 2012 92 100
-
(2012)
Biochim. Biophys. Acta
, vol.1823
, pp. 92-100
-
-
Kressler, D.1
Hurt, E.2
Bergler, H.3
Bassler, J.4
-
21
-
-
0142227208
-
The structure of ClpB: A molecular chaperone that rescues proteins from an aggregated state
-
S. Lee, M.E. Sowa, Y.H. Watanabe, P.B. Sigler, W. Chiu, M. Yoshida, and F.T. Tsai The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state Cell 115 2003 229 240
-
(2003)
Cell
, vol.115
, pp. 229-240
-
-
Lee, S.1
Sowa, M.E.2
Watanabe, Y.H.3
Sigler, P.B.4
Chiu, W.5
Yoshida, M.6
Tsai, F.T.7
-
22
-
-
21644453935
-
Two residues of rubisco activase involved in recognition of the rubisco substrate
-
C. Li, M.E. Salvucci, and A.R. Portis Jr. Two residues of rubisco activase involved in recognition of the rubisco substrate J. Biol. Chem. 280 2005 24864 24869
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 24864-24869
-
-
Li, C.1
Salvucci, M.E.2
Portis, A.R.3
-
23
-
-
84863230166
-
Interprotomer motion-transmission mechanism for the hexameric AAA ATPase p97
-
G. Li, C. Huang, G. Zhao, and W.J. Lennarz Interprotomer motion-transmission mechanism for the hexameric AAA ATPase p97 Proc. Natl. Acad. Sci. U S A 109 2012 3737 3741
-
(2012)
Proc. Natl. Acad. Sci. U S A
, vol.109
, pp. 3737-3741
-
-
Li, G.1
Huang, C.2
Zhao, G.3
Lennarz, W.J.4
-
24
-
-
34447508216
-
Phaser crystallographic software
-
A.J. McCoy, R.W. Grosse-Kunstleve, P.D. Adams, M.D. Winn, L.C. Storoni, and R.J. Read Phaser crystallographic software J. Appl. Crystallogr. 40 2007 658 674
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
25
-
-
84856474838
-
Emerging functions of the VCP/p97 AAA-ATPase in the ubiquitin system
-
H. Meyer, M. Bug, and S. Bremer Emerging functions of the VCP/p97 AAA-ATPase in the ubiquitin system Nat. Cell. Biol. 14 2012 117 123
-
(2012)
Nat. Cell. Biol.
, vol.14
, pp. 117-123
-
-
Meyer, H.1
Bug, M.2
Bremer, S.3
-
26
-
-
79955525976
-
Positive cooperativity of the p97 AAA ATPase is critical for essential functions
-
S. Nishikori, M. Esaki, K. Yamanaka, S. Sugimoto, and T. Ogura Positive cooperativity of the p97 AAA ATPase is critical for essential functions J. Biol. Chem. 286 2011 15815 15820
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 15815-15820
-
-
Nishikori, S.1
Esaki, M.2
Yamanaka, K.3
Sugimoto, S.4
Ogura, T.5
-
27
-
-
84863272299
-
The role of the N-domain in the ATPase activity of the mammalian AAA ATPase p97/VCP
-
H. Niwa, C.A. Ewens, C. Tsang, H.O. Yeung, X. Zhang, and P.S. Freemont The role of the N-domain in the ATPase activity of the mammalian AAA ATPase p97/VCP J. Biol. Chem. 287 2012 8561 8570
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 8561-8570
-
-
Niwa, H.1
Ewens, C.A.2
Tsang, C.3
Yeung, H.O.4
Zhang, X.5
Freemont, P.S.6
-
28
-
-
84887402236
-
High-speed atomic force microscopic observation of ATP-dependent rotation of the AAA+ chaperone p97
-
K. Noi, D. Yamamoto, S. Nishikori, K. Arita-Morioka, T. Kato, T. Ando, and T. Ogura High-speed atomic force microscopic observation of ATP-dependent rotation of the AAA+ chaperone p97 Structure 21 2013 1992 2002
-
(2013)
Structure
, vol.21
, pp. 1992-2002
-
-
Noi, K.1
Yamamoto, D.2
Nishikori, S.3
Arita-Morioka, K.4
Kato, T.5
Ando, T.6
Ogura, T.7
-
29
-
-
0023809599
-
+-ATPase activity
-
+-ATPase activity Methods Enzymol. 156 1988 116 119
-
(1988)
Methods Enzymol.
, vol.156
, pp. 116-119
-
-
Norby, J.G.1
-
30
-
-
84870831488
-
A tightly regulated molecular toggle controls AAA+ disaggregase
-
Y. Oguchi, E. Kummer, F. Seyffer, M. Berynskyy, B. Anstett, R. Zahn, R.C. Wade, A. Mogk, and B. Bukau A tightly regulated molecular toggle controls AAA+ disaggregase Nat. Struct. Mol. Biol. 19 2012 1338 1346
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1338-1346
-
-
Oguchi, Y.1
Kummer, E.2
Seyffer, F.3
Berynskyy, M.4
Anstett, B.5
Zahn, R.6
Wade, R.C.7
Mogk, A.8
Bukau, B.9
-
31
-
-
0034885052
-
AAA+ superfamily ATPases: Common structure - Diverse function
-
T. Ogura, and A.J. Wilkinson AAA+ superfamily ATPases: common structure - diverse function Genes Cells 6 2001 575 597
-
(2001)
Genes Cells
, vol.6
, pp. 575-597
-
-
Ogura, T.1
Wilkinson, A.J.2
-
32
-
-
1642377971
-
Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases
-
T. Ogura, S.W. Whiteheart, and A.J. Wilkinson Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases J. Struct. Biol. 146 2004 106 112
-
(2004)
J. Struct. Biol.
, vol.146
, pp. 106-112
-
-
Ogura, T.1
Whiteheart, S.W.2
Wilkinson, A.J.3
-
33
-
-
33749257470
-
Going through the motions: The ATPase cycle of p97
-
V.E. Pye, I. Dreveny, L.C. Briggs, C. Sands, F. Beuron, X. Zhang, and P.S. Freemont Going through the motions: the ATPase cycle of p97 J. Struct. Biol. 156 2006 12 28
-
(2006)
J. Struct. Biol.
, vol.156
, pp. 12-28
-
-
Pye, V.E.1
Dreveny, I.2
Briggs, L.C.3
Sands, C.4
Beuron, F.5
Zhang, X.6
Freemont, P.S.7
-
34
-
-
84925533369
-
Structure of human cytoplasmic dynein-2 primed for its power stroke
-
H. Schmidt, R. Zalyte, L. Urnavicius, and A.P. Carter Structure of human cytoplasmic dynein-2 primed for its power stroke Nature 518 2015 435 438
-
(2015)
Nature
, vol.518
, pp. 435-438
-
-
Schmidt, H.1
Zalyte, R.2
Urnavicius, L.3
Carter, A.P.4
-
35
-
-
84870792675
-
Hsp70 proteins bind Hsp100 regulatory M domains to activate AAA+ disaggregase at aggregate surfaces
-
F. Seyffer, E. Kummer, Y. Oguchi, J. Winkler, M. Kumar, R. Zahn, V. Sourjik, B. Bukau, and A. Mogk Hsp70 proteins bind Hsp100 regulatory M domains to activate AAA+ disaggregase at aggregate surfaces Nat. Struct. Mol. Biol. 19 2012 1347 1355
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1347-1355
-
-
Seyffer, F.1
Kummer, E.2
Oguchi, Y.3
Winkler, J.4
Kumar, M.5
Zahn, R.6
Sourjik, V.7
Bukau, B.8
Mogk, A.9
-
36
-
-
0037423187
-
ATPase activity of p97-valosin-containing protein (VCP). D2 mediates the major enzyme activity, and D1 contributes to the heat-induced activity
-
C. Song, Q. Wang, and C.C. Li ATPase activity of p97-valosin-containing protein (VCP). D2 mediates the major enzyme activity, and D1 contributes to the heat-induced activity J. Biol. Chem. 278 2003 3648 3655
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 3648-3655
-
-
Song, C.1
Wang, Q.2
Li, C.C.3
-
37
-
-
82955247612
-
Structure of green-type rubisco activase from tobacco
-
M. Stotz, O. Mueller-Cajar, S. Ciniawsky, P. Wendler, F.U. Hartl, A. Bracher, and M. Hayer-Hartl Structure of green-type rubisco activase from tobacco Nat. Struct. Mol. Biol. 18 2011 1366 1370
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 1366-1370
-
-
Stotz, M.1
Mueller-Cajar, O.2
Ciniawsky, S.3
Wendler, P.4
Hartl, F.U.5
Bracher, A.6
Hayer-Hartl, M.7
-
38
-
-
84890929831
-
Altered intersubunit communication is the molecular basis for functional defects of pathogenic p97 mutants
-
W.K. Tang, and D. Xia Altered intersubunit communication is the molecular basis for functional defects of pathogenic p97 mutants J. Biol. Chem. 288 2013 36624 36635
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 36624-36635
-
-
Tang, W.K.1
Xia, D.2
-
39
-
-
77954957347
-
A novel ATP-dependent conformation in p97 N-D1 fragment revealed by crystal structures of disease-related mutants
-
W.K. Tang, D. Li, C.C. Li, L. Esser, R. Dai, L. Guo, and D. Xia A novel ATP-dependent conformation in p97 N-D1 fragment revealed by crystal structures of disease-related mutants EMBO J. 29 2010 2217 2229
-
(2010)
EMBO J.
, vol.29
, pp. 2217-2229
-
-
Tang, W.K.1
Li, D.2
Li, C.C.3
Esser, L.4
Dai, R.5
Guo, L.6
Xia, D.7
-
40
-
-
28844446882
-
Multifunctional roles of the conserved Arg residues in the second region of homology of p97/valosin-containing protein
-
Q. Wang, C. Song, L. Irizarry, R. Dai, X. Zhang, and C.C. Li Multifunctional roles of the conserved Arg residues in the second region of homology of p97/valosin-containing protein J. Biol. Chem. 280 2005 40515 40523
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 40515-40523
-
-
Wang, Q.1
Song, C.2
Irizarry, L.3
Dai, R.4
Zhang, X.5
Li, C.C.6
-
42
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
M.D. Winn, C.C. Ballard, K.D. Cowtan, E.J. Dodson, P. Emsley, P.R. Evans, R.M. Keegan, E.B. Krissinel, A.G. Leslie, A. McCoy, and et al. Overview of the CCP4 suite and current developments Acta Crystallogr. D Biol. Crystallogr. 67 2011 235 242
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.9
McCoy, A.10
-
43
-
-
84855188325
-
The Cdc48 machine in endoplasmic reticulum associated protein degradation
-
D.H. Wolf, and A. Stolz The Cdc48 machine in endoplasmic reticulum associated protein degradation Biochim. Biophys. Acta 1823 2012 117 124
-
(2012)
Biochim. Biophys. Acta
, vol.1823
, pp. 117-124
-
-
Wolf, D.H.1
Stolz, A.2
-
44
-
-
0038487228
-
Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: Dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains
-
Y. Ye, H.H. Meyer, and T.A. Rapoport Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains J. Cell. Biol. 162 2003 71 84
-
(2003)
J. Cell. Biol.
, vol.162
, pp. 71-84
-
-
Ye, Y.1
Meyer, H.H.2
Rapoport, T.A.3
-
45
-
-
84901044474
-
Inter-ring rotations of AAA ATPase p97 revealed by electron cryomicroscopy
-
H.O. Yeung, A. Forster, C. Bebeacua, H. Niwa, C. Ewens, C. McKeown, X. Zhang, and P.S. Freemont Inter-ring rotations of AAA ATPase p97 revealed by electron cryomicroscopy Open Biol. 4 2014 130142
-
(2014)
Open Biol.
, vol.4
, pp. 130142
-
-
Yeung, H.O.1
Forster, A.2
Bebeacua, C.3
Niwa, H.4
Ewens, C.5
McKeown, C.6
Zhang, X.7
Freemont, P.S.8
|