Analysis of nucleotide binding to P97 reveals the properties of a tandem AAA hexameric ATPase

Journal of Biological Chemistry

Volumn 283, Issue 20, 2008, Pages 13745-13752

  Briggs, Louise C ^a   Baldwin, Geoff S ^a   Miyata, Non ^b   Kondo, Hisao ^b   Zhang, Xiaodong ^a   Freemont, Paul S ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b KYUSHU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BINDING ENERGY; BIOCHEMISTRY; MONOMERS; NUCLEIC ACIDS; NUCLEOTIDES;

A STABLES; ATP HYDROLYSES; ATPASE ACTIVITIES; CONFORMATIONAL CHANGES; DO-MAINS; ENDOPLASMIC RETICULUM; HEXAMER; HEXAMERIC ATPASE; NUCLEOTIDE BINDINGS; QUANTITATIVE ANALYSES;

BINDING SITES;

ADENOSINE 5' O (3 THIOTRIPHOSPHATE); ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; ARGININE; HEXAMER; NUCLEOTIDE; POLYMER; PROTEIN P97; UNCLASSIFIED DRUG; ADENOSINE 5'-O-(3-THIOTRIPHOSPHATE); DRUG DERIVATIVE; NUCLEAR PROTEIN; P97 ATPASE;

ARTICLE; BINDING AFFINITY; CONFORMATIONAL TRANSITION; ENZYME ACTIVITY; NUCLEOTIDE BINDING SITE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN DOMAIN; STOICHIOMETRY; ANIMAL; BINDING SITE; CHEMISTRY; CONFORMATION; DOSE RESPONSE; HYDROLYSIS; KINETICS; METABOLISM; MOUSE; PHYSIOLOGY; PROTEIN BINDING; RAT;

ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; ANIMALS; BINDING SITES; DOSE-RESPONSE RELATIONSHIP, DRUG; HYDROLYSIS; KINETICS; MICE; MOLECULAR CONFORMATION; NUCLEAR PROTEINS; NUCLEOTIDES; PROTEIN BINDING; RATS;

EID: 46649111025     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M709632200     Document Type: Article

References (41)

1. Hanson, P. I., and Whiteheart, S. W. (2005) Nat. Rev. Mol. Cell Biol. 6, 519-529
2. Ye, Y. (2006) J. Struct. Biol. 156, 29-40
3. Uchiyama, K., and Kondo, H. (2005) J Biochem. (Tokyo) 137, 115-119
4. Shcherbik, N., and Haines, D. S. (2007) Mol. Cell 25, 385-397
5. Dreveny, I., Pye, V. E., Beuron, F., Briggs, L. C., Isaacson, R. L., Matthews, S. J., McKeown, C., Yuan, X., Zhang, X., and Freemont, P. S. (2004) Biochem. Soc. Trans. 32, 715-720
6. Pye, V. E., Dreveny, I., Briggs, L. C., Sands, C., Beuron, F., Zhang, X., and Freemont, P. S. (2006) J. Struct. Biol. 156, 12-28
7. Beuron, F., Dreveny, I., Yuan, X., Pye, V. E., McKeown, C., Briggs, L. C., Cliff, M. J., Kaneko, Y., Wallis, R., Isaacson, R. L., Ladbury, J. E., Matthews, S. J., Kondo, H., Zhang, X., and Freemont, P. S. (2006) EMBO J. 25, 1967-1976
8. Rouiller, I., DeLaBarre, B., May, A. P., Weis, W. I., Brunger, A. T., Milligan, R. A., and Wilson-Kubalek, E. M. (2002) Nat. Struct. Biol. 9, 950-957
9. Rouiller, I., Butel, V. M., Latterich, M., Milligan, R. A., and Wilson-Kubalek, E. M. (2000) Mol. Cell 6, 1485-1490
10. Ogura, T., and Wilkinson, A. J. (2001) Genes Cells 6, 575-597
11. Smith, G. R., Contreras-Moreira, B., Zhang, X., and Bates, P. A. (2004) J. Struct. Biol. 146, 189-204
12. Ogura, T., Whiteheart, S. W., and Wilkinson, A. J. (2004) J. Struct. Biol. 146, 106-112
13. Wang, Q., Song, C., Irizarry, L., Dai, R., Zhang, X., and Li, C. C. (2005) J. Biol. Chem. 280, 40515-40523
14. DeLaBarre, B., and Brunger, A. T. (2005) J. Mol. Biol. 347, 437-452
15. DeLaBarre, B., and Brunger, A. T. (2003) Nat. Struct. Biol. 10, 856-863
16. Huyton, T., Pye, V. E., Briggs, L. C., Flynn, T. C., Beuron, F., Kondo, H., Ma, J., Zhang, X., and Freemont, P. S. (2003) J. Struct. Biol. 144, 337-348
17. Zhang, X., Shaw, A., Bates, P. A., Newman, R. H., Gowen, B., Orlova, E., Gorman, M. A., Kondo, H., Dokurno, P., Lally, J., Leonard, G., Meyer, H., van Heel, M., and Freemont, P. S. (2000) Mol. Cell 6, 1473-1484
18. Dreveny, I., Kondo, H., Uchiyama, K., Shaw, A., Zhang, X., and Freemont, P. S. (2004) EMBO J. 23, 1030-1039
19. Davies, J. M., Tsuruta, H., May, A. P., and Weis, W. I. (2005) Structure (Camb.) 13, 183-195
20. Wang, Q., Song, C., Yang, X., and Li, C. C. (2003) J. Biol. Chem. 278, 32784-32793
21. Zalk, R., and Shoshan-Barmatz, V. (2003) Biochem. J. 374, 473-480
22. Cheng, Y., and Prusoff, W. H. (1973) Biochem. Pharmacol. 22, 3099-3108
23. Hattendorf, D. A., and Lindquist, S. L. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 2732-2737
24. Sigurskjold, B. W. (2000) Anal. Biochem. 277, 260-266
25. Wiseman, T., Williston, S., Brandts, J. F., and Lin, L. N. (1989) Anal. Biochem. 179, 131-137
26. Park, S., Rancour, D. M., and Bednarek, S. Y. (2007) J. Biol. Chem. 282, 5217-5224
27. Song, C., Wang, Q., and Li, C. C. (2003) J. Biol. Chem. 278, 3648-3655
28. Wang, Q., Song, C., and Li, C. C. (2003) Biochem. Biophys. Res. Commun. 300, 253-260
29. Putnam, C. D., Clancy, S. B., Tsuruta, H., Gonzalez, S., Wetmur, J. G., and Tainer, J. A. (2001) J. Mol. Biol. 311, 297-310
30. Bochtler, M., Hartmann, C., Song, H. K., Bourenkov, G. P., Bartunik, H. D., and Huber, R. (2000) Nature 403, 800-805
31. Hersch, G. L., Burton, R. E., Bolon, D. N., Baker, T. A., and Sauer, R. T. (2005) Cell 121, 1017-1027
32. Beuron, F., Flynn, T. C., Ma, J., Kondo, H., Zhang, X., and Freemont, P. S. (2003) J. Mol. Biol. 327, 619-629
33. Boyault, C., Gilquin, B., Zhang, Y., Rybin, V., Garman, E., Meyer-Klaucke, W., Matthias, P., Muller, C. W., and Khochbin, S. (2006) EMBO J. 25, 3357-3366
34. Uchiyama, K., Jokitalo, E., Kano, F., Murata, M., Zhang, X., Canas, B., Newman, R., Rabouille, C., Pappin, D., Freemont, P., and Kondo, H. (2002) J. Cell Biol. 159, 855-866
35. Matveeva, E. A., He, P., and Whiteheart, S. W. (1997) J. Biol. Chem. 272, 26413-26418
36. Lenzen, C. U., Steinmann, D., Whiteheart, S. W., and Weis, W. I. (1998) Cell 94, 525-536
37. Yu, R. C., Hanson, P. I., Jahn, R., and Brunger, A. T. (1998) Nat. Struct. Biol. 5, 803-811
38. Sumida, M., Hong, R. M., and Tagaya, M. (1994) J. Biol. Chem. 269, 20636-20641
39. Whiteheart, S. W., Rossnagel, K., Buhrow, S. A., Brunner, M., Jaenicke, R., and Rothman, J. E. (1994) J. Cell Biol. 126, 945-954
40. Hattendorf, D. A., and Lindquist, S. L. (2002) EMBO J. 21, 12-21
41. Doyle, S. M., Shorter, J., Zolkiewski, M., Hoskins, J. R., Lindquist, S., and Wickner, S. (2007) Nat. Struct. Mol. Biol. 14, 114-122