High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED

PLoS Computational Biology

Volumn 11, Issue 12, 2015, Pages

  Kaminski, James ^a   Gibson, Molly K ^b   Franzosa, Eric A ^a,c   Segata, Nicola ^d   Dantas, Gautam ^b,e   Huttenhower, Curtis ^a,c  

^a HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c BROAD INSTITUTE OF MIT AND HARVARD   (United States)

^d UNIVERSITY OF TRENTO   (Italy)

^e WASHINGTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTICS; PHYLOGENETIC; PROTEINS;

ANTIBIOTICS RESISTANCE; COMMUNITY FUNCTION; HIGH SPECIFICITY; LONGEST RUN; METAGENOMICS; MICROBIAL COMMUNITIES; MICROBIOME; PROTEIN DATABASE; PROTEIN FAMILY; RUNTIMES;

MICROORGANISMS;

ACCURACY; AMINO ACID SEQUENCE; ANTIBIOTIC RESISTANCE; ARTICLE; COMPUTER PREDICTION; GENETIC DATABASE; GENETIC MARKER; HUMAN; INTERMETHOD COMPARISON; INTESTINE FLORA; METAGENOMICS; MICROBIAL COMMUNITY; MOLECULAR PHYLOGENY; NONHUMAN; PROTEIN DATABASE; SPECIES COMPOSITION; ALGORITHM; CLASSIFICATION; GENETICS; HIGH THROUGHPUT SEQUENCING; MICROFLORA; OPEN READING FRAME; PROCEDURES; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SOFTWARE;

BACTERIAL PROTEIN; GENETIC MARKER;

ALGORITHMS; BACTERIAL PROTEINS; GENETIC MARKERS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MICROBIOTA; OPEN READING FRAMES; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SOFTWARE;

EID: 84953212097     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1004557     Document Type: Article

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