Erratum: Collagen Sequence Analysis of the Extinct Giant Ground Sloths Lestodon and Megatherium (PLoS ONE (2015) 10:11 (e0139611) DOI: 10.1371/journal.pone.0139611);Collagen sequence analysis of the extinct giant ground sloths lestodon and megatherium

PLoS ONE

Volumn 10, Issue 11, 2015, Pages

  Buckley, Michael ^a   Farina, Richard A ^b   Lawless, Craig ^a   Tambusso, P Sebastian ^b   Varela, Luciano ^b   Carlini, Alfredo A ^c   Powell, Jaime E ^d   Martinez, Jorge G ^e  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b UNIVERSIDAD DE LA REPÚBLICA   (Uruguay)

^c Departamento Científico   (Argentina)

^d UNIVERSIDAD NACIONAL DE TUCUMÁN   (Argentina)

^e Instituto Superior de Estudios Sociales CONICET Instituto de Arqueología y Museo UNT   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

COLLAGEN;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; FOSSIL; LESTODON ARMATUS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MEGATHERIUM AMERICANUM; MOLECULAR PHYLOGENY; NONHUMAN; PROTEIN ANALYSIS; PROTEOMICS; SLOTH; TENREC; ANIMAL; DNA SEQUENCE; GENETICS; PHYLOGENY; SPECIES EXTINCTION;

ANIMALS; COLLAGEN; EXTINCTION, BIOLOGICAL; FOSSILS; PHYLOGENY; PROTEOMICS; SEQUENCE ANALYSIS, DNA; SLOTHS;

EID: 84951310090     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0144793     Document Type: Erratum

References (51)

1. Fariña RA, Vizcaíno SF, De Iuliis G. 2013 Megafauna: giant beasts of Pleistocene South America: Indiana University Press, Bloomington, Indiana.
2. Vizcaíno SF, LoughryW(2008). Biology of the Xenarthra. University Press of Florida, Florida, pp 1-10.
3. Gaudin TJ (2003). Phylogeny of the Xenarthra (Mammalia). Senckenbergiana biologica 83(1):27-40.
4. Van Dijk MA, Paradis E, Catzeflis F, De JongWW(1999). The virtues of gaps: Xenarthran (Edentate) monophyly supported by a unique deletion in ?A-crystallin. Systematic biology 48(1):94-106. PMID: 12078648
5. Engelmann GF (1985). The phylogeny of the Xenarthra. The evolution and ecology of armadillos, sloths, and vermilinguas. Smithsonian Institution Press, Washington, DC, pp 51-64.
6. Webb SD (2006). The great American biotic interchange: patterns and processes. Annals of the Missouri Botanical Garden 93(2): 245-57.
7. Woodburne MO (2010). The Great American Biotic Interchange: dispersals, tectonics, climate, sea level and holding pens. Journal of Mammalian Evolution 17(4):245-64. PMID: 21125025
8. Lessa EP, Fariña RA (1996). Reassessment of extinction patterns among the late Pleistocene mammals of South America. Palaeontology 39(3):651-62.
9. O'Leary MA, Bloch JI, Flynn JJ, Gaudin TJ, Giallombardo A, Giannini NP, et al. (2013). The placental mammal ancestor and the post-K-Pg radiation of placentals. Science 339(6120):662-7. doi: 10.1126/science.1229237 PMID: 23393258
10. Hallström BM, Kullberg M, Nilsson MA, Janke A (2007). Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups. Molecular biology and evolution 24(9):2059-68. PMID: 17630282
11. Springer MS, Murphy WJ, Eizirik E, O'Brien SJ (2003). Placental mammal diversification and the Cretaceous- Tertiary boundary. Proceedings of the National Academy of Sciences 100(3):1056-61.
12. Delsuc F, Vizcaíno SF, Douzery EJ (2004). Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans. BMC Evolutionary Biology 4(1):11.
13. Fariña R, Vizcaíno S (2003). Slow moving or browsers? A note on nomenclature. Senckenbergiana Biologica 83(1):3-4.
14. Delsuc F, Stanhope MJ, Douzery EJ (2003). Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes. Molecular phylogenetics and evolution 28(2):261-75. PMID: 12878463
15. Gaudin T, McDonald H (2008). Morphology-based investigations of the phylogenetic relationships among extant and fossil xenarthrans. In The Biology of the Xenarthra (Vizcaíno SF & Loughry WJ, eds.) University Press of Florida, Gainesville. pp 24-36.
16. Delsuc F, Ctzeflis FM, Stanhope MJ, Douzery EJ (2001). The evolution of armadillos, anteaters and sloths depicted by nuclear and mitochondrial phylogenies: implications for the status of the enigmatic fossil Eurotamandua. Proceedings of the Royal Society of London Series B: Biological Sciences 268 (1476):1605-15. PMID: 11487408
17. Poinar HN, Hofreiter M, Spaulding WG, Martin PS, Stankiewicz BA, Bland H, et al. (1998). Molecular coproscopy: Dung and diet of the extinct ground sloth Nothrotheriops shastensis. Science 281 (5375):402-6. PMID: 9665881
18. Greenwood AD, Castresana J, Feldmaier-Fuchs G, Paabo S (2001). A molecular phylogeny of two extinct sloths. Molecular Phylogenetics and Evolution 18(1):94-103. PMID: 11161746
19. Höss M, Dilling A, Currant A, Pääbo S (1996). Molecular phylogeny of the extinct ground sloth Mylodon darwinii. Proceedings of the National Academy of Sciences 93(1):181-5.
20. Hofreiter M, Poinar HN, Spaulding WG, Bauer K, Martin PS, Possnert G, et al. (2000). A molecular analysis of ground sloth diet through the last glaciation. Molecular Ecology. 9(12):1975-84. PMID: 11123610
21. Buckley M, Walker A, Ho SY, Yang Y, Smith C, Ashton P, et al. (2008). Comment on "Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry". Science 4 (319):33c.
22. Buckley M (2013). A Molecular Phylogeny of Plesiorycteropus Reassigns the Extinct Mammalian Order 'Bibymalagasia'. Plos One 8(3):e59614. doi: 10.1371/journal.pone.0059614 PMID: 23555726
23. Nielsen-Marsh C (2002). Biomolecules in fossil remains. The Biochemist 12-4.
24. Shoshani J, Lowenstein JM, Walz DA, Goodman M (1985). Proboscidean origins of mastodont and woolly mammoth demonstrated immunologically. Paleobiology 11:429-37.
25. Lowenstein JM, Sarich VM, Richardson BJ (1981). Albumin systematics of the extinct mammoth and Tasmanian wolf. Nature 291:1409-411.
26. Jiang X, Ye M, Jiang X, Liu G, Feng S, Cui L, et al. (2007). Method development of efficient protein extraction in bone tissue for proteome analysis. Journal of Proteome Research. 6(6):2287-94. PMID: 17488005
27. Wadsworth C, Buckley M (2014). Proteome degradation in fossils: investigating the longevity of protein survival in ancient bone. Rapid Commun Mass Spectrom 28(6):605-15. doi: 10.1002/rcm.6821 PMID: 24519823
28. Buckley M, Walker A, Ho SYW, Yang Y, Smith C, Ashton P, et al. (2008). Comment on "protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry". Science 319 (5859).
29. Rybczynski N, Gosse JC, Harington CR, Wogelius RA, Hidy AJ, Buckley M (2013). Mid-Pliocene warm-period deposits in the High Arctic yield insight into camel evolution. Nature communications 4:1550. doi: 10.1038/ncomms2516 PMID: 23462993
30. Buckley M, Melton ND, Montgomery J (2013). Proteomics analysis of ancient food vessel stitching reveals 4000-year-old milk protein. Rapid Commun Mass Spectrom 27(4):531-8. doi: 10.1002/rcm. 6481 PMID: 23322659
31. Cappellini E, Jensen LJ, Szklarczyk D, Ginolhac A, da Fonseca RA, Stafford TW Jr., et al. (2011). Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins. Journal of proteome research 11(2):917-26. doi: 10.1021/pr200721u PMID: 22103443
32. Buckley M (2015). Ancient collagen reveals evolutionary history of the endemic South American 'ungulates'. Proceedings of the Royal Society B: Biological Sciences 282 (1806).
33. Cuvier G (1796). Notice sur de squelette d'une trés grande espéce de quadrupéde inconnue jusqu'á présent, trouvé au Paraguay, et déposé au Cabinet dHistoire Naturelle de Madrid. Magasin encyclopédique, ou Journal des Sciences, des lettres et des Arts (2: )303-10.
34. Gervais P. 1855 Recherches sur les mammiféres fossiles de l'Amérique méridionale. Paris: P. Bertrand.
35. Fariña RA, Tambusso PS, Varela L, Czerwonogora A, Di Giacomo M, Musso M, et al. (2014). Arroyo del Vizcaíno, Uruguay: a fossil-rich 30-ka-old megafaunal locality with cut-marked bones. Proceedings of the Royal Society of London B: Biological Sciences 281(1774):20132211.
36. Martínez J, Aschero C (2005). Investigaciones en el sitio Peñas de las Trampas 1.1: entre megafauna y contextos funerarios (Antofagasta de la Sierra, Catamarca). Serie Monogr Did FCN e IML, UNT. 45:25.
37. Guindon S, Gascuel O (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic biology 52(5):696-704. PMID: 14530136
38. Lanfear R, Calcott B, Ho SY, Guindon S (2012). PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular biology and evolution 29 (6):1695-701. doi: 10.1093/molbev/mss020 PMID: 22319168
39. Huelsenbeck JP, Ronquist F (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17(8):754-5. PMID: 11524383
40. Buckley M, Larkin N, Collins M (2011). Mammoth and Mastodon collagen sequences; survival and utility. Geochim Cosmochim Acta 75(7):2007-16.
41. Pujos F, De Iuliis G (2007). Late Oligocene Megatherioidea fauna (Mammalia: Xenarthra) from Salla-Luribay (Bolivia): new data on basal sloth radiation and Cingulata-Tardigrada split. J Vertebr Paleontol 27(1):132-44.
42. McDonald H, De Iuliis G (2008). Fossil history of sloths. In Biology of the Xenarthra (eds. Vicaíno SF and Loughry WJ). University Press of Florida, Florida, pp 39-55.
43. Buckley M, Collins M, Thomas-Oates J, Wilson JC (2009). Species identification by analysis of bone collagen using matrix-Assisted laser desorption/ionisation time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 23(23):3843-54. doi: 10.1002/rcm.4316 PMID: 19899187
44. Sarich VM (1985). Xenarthran systematics: albumin immunological evidence. In The Evolution and Ecology of Armadillos, Sloths and Vermilingues (ed. Montgomery G. G.). Washington, Smithsonian Institution, pp 77-81.
45. Greenwood AD, Castresana J, Feldmaier-Fuchs G, Pääbo S (2001). A molecular phylogeny of two extinct sloths. Molecular phylogenetics and evolution 18(1):94-103. PMID: 11161746
46. Barros MC, Sampaio I, Schneider H (2003). Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters. Genetics and molecular biology 26(1):5-11.
47. Gaudin TJ (2004). Phylogenetic relationships among sloths (Mammalia, Xenarthra, Tardigrada): the craniodental evidence. Zoological Journal of the Linnean Society. 140(2):255-305.
48. Hofreiter M, Betancourt JL, Sbriller AP, Markgraf V, McDonald HG (2003). Phylogeny, diet, and habitat of an extinct ground sloth from Cuchillo Cura, Neuquen Province, southwest Argentina. Quaternary Res 59(3):364-78.
49. Clack AA, MacPhee RD, Poinar HN. (2012). Case study: ancient sloth DNA recovered from hairs preserved in paleofeces. Methods Mol Biol 840: 51-6. doi: 10.1007/978-1-61779-516-9-7 PMID: 22237521
50. Pujos F, De Iuliis G, Argot C, Werdelin L (2007). A peculiar climbing Megalonychidae from the Pleistocene of Peru and its implication for sloth history. Zoological Journal of the Linnean Society 149(2):179-235.
51. Buckley M, Wadsworth C (2014). Proteome degradation in ancient bone: diagenesis and phylogenetic potential. Palaeogeography, Palaeoclimatology, Palaeoecology 416:69-79.