Tissue-specific circadian clocks in plants

Current Opinion in Plant Biology

Volumn 29, Issue , 2016, Pages 44-49

  Endo, Motomu ^a,b  

^a KYOTO UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY SPECIFICITY; CIRCADIAN RHYTHM; PLANT PHYSIOLOGY;

CIRCADIAN CLOCKS; ORGAN SPECIFICITY; PLANT PHYSIOLOGICAL PHENOMENA;

EID: 84951201391     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbi.2015.11.003     Document Type: Review

References (43)

1. Doherty C.J., Kay S.A. Circadian control of global gene expression patterns. Annu Rev Genet 2010, 44:419-444.
2. Jolma I.W., Laerum O.D., Lillo C., Ruoff P. Circadian oscillators in eukaryotes. Wiley Interdiscip Rev Syst Biol Med 2010, 2:533-549.
3. Barclay J.L., Tsang A.H., Oster H. Interaction of central and peripheral clocks in physiological regulation. Prog Brain Res 2012, 199:163-181.
4. Hennessey T.L., Field C.B. Evidence of multiple circadian oscillators in bean plants. J Biol Rhythms 1992, 7:105-113.
5. 2+ fluxes and Lhcb gene expression. Proc Natl Acad Sci U S A 1999, 96:11659-11663.
6. Wood N.T., Haley A., Viry-Moussaid M., Johnson C.H., van der Luit A.H., Trewavas A.J. The calcium rhythms of different cell types oscillate with different circadian phases. Plant Physiol 2001, 125:787-796.
7. 2+ oscillations and rhythmic CHLOROPHYLL A/B BINDING PROTEIN2 promoter activity in Arabidopsis. Plant Cell 2007, 19:3474-3490.
8. Thain S.C., Murtas G., Lynn J.R., McGrath R.B., Millar A.J. The circadian clock that controls gene expression in Arabidopsis is tissue specific. Plant Physiol 2002, 130:102-110.
9. Hall A., Kozma-Bognar L., Bastow R.M., Nagy F., Millar A.J. Distinct regulation of CAB and PHYB gene expression by similar circadian clocks. Plant J 2002, 32:529-537.
10. Michael T.P., Salome P.A., McClung C.R. Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity. Proc Natl Acad Sci U S A 2003, 100:6878-6883.
11. Yakir E., Hassidim M., Melamed-Book N., Hilman D., Kron I., Green R.M. Cell autonomous and cell-type specific circadian rhythms in Arabidopsis. Plant J 2011, 68:520-531.
12. Fukuda H., Nakamichi N., Hisatsune M., Murase H., Mizuno T. Synchronization of plant circadian oscillators with a phase delay effect of the vein network. Phys Rev Lett 2007, 99:098102.
13. Endo M., Shimizu H., Nohales M.A., Araki T., Kay S.A. Tissue-specific clocks in Arabidopsis show asymmetric coupling. Nature 2014, 515:419-422.
14. Shimizu H., Araki T., Endo M. Photoperiod sensitivity of the Arabidopsis circadian clock is tissue-specific. Plant Signal Behav 2015, 10:e1010933.
15. Fukuda H., Ukai K., Oyama T. Self-arrangement of cellular circadian rhythms through phase-resetting in plant roots. Phys Rev E Stat Nonlin Soft Matter Phys 2012, 86:041917.
16. Para A., Farré E.M., Imaizumi T., Pruneda-Paz J.L., Harmon F.G., Kay S.A. PRR3 is a vascular regulator of TOC1 stability in the Arabidopsis circadian clock. Plant Cell 2007, 19:3462-3473.
17. Pruneda-Paz J.L., Breton G., Para A., Kay S.A. A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science 2009, 323:1481-1485.
18. Chow B.Y., Sanchez S.E., Breton G., Pruneda-Paz J.L., Krogan N.T., Kay S.A. Transcriptional regulation of LUX by CBF1 mediates cold input to the circadian clock in Arabidopsis. Curr Biol 2014, 24:1518-1524.
19. Xie Q., Wang P., Liu X., Yuan L., Wang L., Zhang C., Li Y., Xing H., Zhi L., Yue Z., et al. LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator. Plant Cell 2014, 26:2843-2857.
20. Edwards J., Martin A.P., Andriunas F., Offler C.E., Patrick J.W., McCurdy D.W. GIGANTEA is a component of a regulatory pathway determining wall ingrowth deposition in phloem parenchyma transfer cells of Arabidopsis thaliana. Plant J 2010, 63:651-661.
21. Fujiwara S., Wang L., Han L., Suh S.S., Salomé P.A., McClung C.R., Somers D.E. Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo-response regulator proteins. J Biol Chem 2008, 283:23073-23083.
22. Koo J., Kim Y., Kim J., Yeom M., Lee I.C., Nam H.G. A GUS/luciferase fusion reporter for plant gene trapping and for assay of promoter activity with luciferin-dependent control of the reporter protein stability. Plant Cell Physiol 2007, 48:1121-1131.
23. Sheldon C.C., Hills M.J., Lister C., Dean C., Dennis E.S., Peacock W.J. Resetting of FLOWERING LOCUS C expression after epigenetic repression by vernalization. Proc Natl Acad Sci U S A 2008, 105:2214-2229.
24. Marrocco K., Thomann A., Parmentier Y., Genschik P., Criqui M.C. The APC/C E3 ligase remains active in most post-mitotic Arabidopsis cells and is required for proper vasculature development and organization. Development 2009, 136:1475-1485.
25. Doyle M.R., Davis S.J., Bastow R.M., McWatters H.G., Kozma-Bognár L., Nagy F., Millar A.J., Amasino R.M. The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. Nature 2002, 419:74-77.
26. Endo M., Mochizuki N., Suzuki T., Nagatani A. CRYPTOCHROME2 in vascular bundles regulates flowering in Arabidopsis. Plant Cell 2007, 19:84-93.
27. Ranjan A., Fiene G., Fackendahl P., Hoecker U. The Arabidopsis repressor of light signaling SPA1 acts in the phloem to regulate seedling de-etiolation, leaf expansion and flowering time. Development 2011, 138:1851-1862.
28. Jang S., Marchal V., Panigrahi K.C., Wenkel S., Soppe W., Deng X.W., Valverde F., Coupland G. Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response. EMBO J 2008, 27:1277-1288.
29. Wang H., Wang H. Multifaceted roles of FHY3 and FAR1 in light signaling and beyond. Trends Plant Sci 2015, 20:453-461.
30. Wang P.H., Hsu C.R. Do Clocks in Different Arabidopsis Tissues Communicate with Each Other? 2013, http://proj1.sinica.edu.tw/~hispj/news/paper/101/9902399038.pdf.
31. James A.B., Monreal J.A., Nimmo G.A., Kelly C.L., Herzyk P., Jenkins G.I., Nimmo H.G. The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science 2008, 322:1832-1835.
32. Takahashi N., Hirata Y., Aihara K., Mas P. A hierarchical multi-oscillator network orchestrates the Arabidopsis circadian system. Cell 2015, 163:148-159.
33. Baran P. On Distributed Communications: I. Introduction to Distributed Communications Networks 2008, http://www.rand.org/publications/RM/baran.list.html, RM-3420-PR.
34. Tahara Y., Shibata S. Chronobiology and nutrition. Neuroscience 2013, 253:78-88.
35. Thain S.C., Hall A., Millar A.J. Functional independence of circadian clocks that regulate plant gene expression. Curr Biol 2000, 10:951-956.
36. Wenden B., Toner D.L., Hodge S.K., Grima R., Millar A.J. Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf. Proc Natl Acad Sci U S A 2012, 109:6757-6762.
37. Haydon M.J., Mielczarek O., Robertson F.C., Hubbard K.E., Webb A.A. Photosynthetic entrainment of the Arabidopsis thaliana circadian clock. Nature 2013, 502:689-692.
38. Sevilem I., Miyashima S., Helariutta Y. Cell-to-cell communication via plasmodesmata in vascular plants. Cell Adh Migr 2013, 7:27-32.
39. Pant B.D., Buhtz A., Kehr J., Scheible W.R. MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J 2008, 53:731-738.
40. Breakfield N.W., Corcoran D.L., Petricka J.J., Shen J., Sae-Seaw J., Rubio-Somoza I., Weigel D., Ohler U., Benfey P.N. High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Res 2012, 22:163-176.
41. Mehta N., Cheng H.Y. Micro-managing the circadian clock: the role of microRNAs in biological timekeeping. J Mol Biol 2013, 425:3609-3624.
42. Bendix C., Marshall C.M., Harmon F.G. Circadian clock genes universally control key agricultural traits. Mol Plant 2015, pii: S1674-2052(15)00171-9.
43. Meireles-Filho A.C., Bardet A.F., Yáñez-Cuna J.O., Stampfel G., Stark A. cis-regulatory requirements for tissue-specific programs of the circadian clock. Curr Biol 2014, 24:1-10.