Ig Superfamily Ligand and Receptor Pairs Expressed in Synaptic Partners in Drosophila

Cell

Volumn 163, Issue 7, 2015, Pages 1756-1769

  Tan, Liming ^a   Zhang, Kelvin Xi ^a   Pecot, Matthew Y ^a   Nagarkar Jaiswal, Sonal ^b   Lee, Pei Tseng ^b   Takemura, Shin Ya ^c   McEwen, Jason M ^a   Nern, Aljoscha ^c   Xu, Shuwa ^a   Tadros, Wael ^a   Chen, Zhenqing ^d,g   Zinn, Kai ^e   Bellen, Hugo J ^b   Morey, Marta ^f   Zipursky, S Lawrence ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b BAYLOR COLLEGE OF MEDICINE   (United States)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^d NEW YORK UNIVERSITY   (United States)

^e California Institute of Technology   (United States)

^f UNIVERSITY OF BARCELONA   (Spain)

^g UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

DIP; Dpr; Drosophila; synaptic specificity; visual system

Indexed keywords

DPR INTERACTING PROTEIN; EPIDERMAL GROWTH FACTOR; IMMUNOGLOBULIN; MESSENGER RNA; PROTEIN; UNCLASSIFIED DRUG; DPR1 PROTEIN, DROSOPHILA; DROSOPHILA PROTEIN; IMMUNOGLOBULIN RECEPTOR;

ANIMAL CELL; ARTICLE; CELL INTERACTION; CELL POPULATION; CELL SURFACE; CONTROLLED STUDY; DROSOPHILA; FLUORESCENCE ACTIVATED CELL SORTING; NERVE CELL; NERVE CELL NETWORK; NEUROPIL; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN TAGGING; RNA SEQUENCE; SYNAPSE; ANIMAL; FLOW CYTOMETRY; METABOLISM; SEQUENCE ANALYSIS; VISION;

ANIMALS; DROSOPHILA; DROSOPHILA PROTEINS; FLOW CYTOMETRY; IMMUNOGLOBULINS; NEURONS; RECEPTORS, IMMUNOLOGIC; SEQUENCE ANALYSIS, RNA; SYNAPSES; VISION, OCULAR;

EID: 84950275141     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2015.11.021     Document Type: Article

References (60)

1. A. Borst Fly visual course control: behaviour, algorithms and circuits Nat. Rev. Neurosci. 15 2014 590 599
2. J. Cang, and D.A. Feldheim Developmental mechanisms of topographic map formation and alignment Annu. Rev. Neurosci. 36 2013 51 77
3. R.A. Carrillo, E. Özkan, K.P. Menon, S. Nagarkar-Jaiswal, P.-T. Lee, M. Jeon, M.E. Birnbaum, H.J. Bellen, K.C. Garcia, and K. Zinn Control of Synaptic Connectivity by a Network of Drosophila IgSF Cell Surface Proteins Cell 163 2015 1770 1782 this issue
4. Y. Chen, O. Akin, A. Nern, C.Y.K. Tsui, M.Y. Pecot, and S.L. Zipursky Cell-type-specific labeling of synapses in vivo through synaptic tagging with recombination Neuron 81 2014 280 293
5. J. de Wit, W. Hong, L. Luo, and A. Ghosh Role of leucine-rich repeat proteins in the development and function of neural circuits Annu. Rev. Cell Dev. Biol. 27 2011 697 729
6. X. Duan, A. Krishnaswamy, I. De la Huerta, and J.R. Sanes Type II cadherins guide assembly of a direction-selective retinal circuit Cell 158 2014 793 807
7. K.-F. Fischbach, and A.P.M. Dittrich The optic lobe of Drosophila melanogaster. I: A. Golgi analysis of wild-type structure Cell Tissue Res. 258 1989 441 475
8. K.-F. Fischbach, G.A. Linneweber, T.F.M. Andlauer, A. Hertenstein, B. Bonengel, and K. Chaudhary The irre cell recognition module (IRM) proteins J. Neurogenet. 23 2009 48 67
9. Fisher, B., Weiszmann, R., Frise, E., Hammonds, A., Tomancak, P., Beaton, A., Berman, B., Quan, E., Shu, S., Lewis, S., et al. (2012). BDGP insitu homepage. http://insitu.fruitfly.org/cgi-bin/ex/insitu.pl.
10. L.G. Fradkin, J.T. Kamphorst, A. DiAntonio, C.S. Goodman, and J.N. Noordermeer Genomewide analysis of the Drosophila tetraspanins reveals a subset with similar function in the formation of the embryonic synapse Proc. Natl. Acad. Sci. USA 99 2002 13663 13668
11. D. Hadjieconomou, K. Timofeev, and I. Salecker A step-by-step guide to visual circuit assembly in Drosophila Curr. Opin. Neurobiol. 21 2011 76 84
12. W. Hong, T.J. Mosca, and L. Luo Teneurins instruct synaptic partner matching in an olfactory map Nature 484 2012 201 207
13. A. Jenett, G.M. Rubin, T.T.B. Ngo, D. Shepherd, C. Murphy, H. Dionne, B.D. Pfeiffer, A. Cavallaro, D. Hall, J. Jeter, and et al. A GAL4-driver line resource for Drosophila neurobiology Cell Rep. 2 2012 991 1001
14. K.G. Johnson, A.P. Tenney, A. Ghose, A.M. Duckworth, M.E. Higashi, K. Parfitt, O. Marcu, T.R. Heslip, J.L. Marsh, T.L. Schwarz, and et al. The HSPGs Syndecan and Dallylike bind the receptor phosphatase LAR and exert distinct effects on synaptic development Neuron 49 2006 517 531
15. D. Kenzelmann, R. Chiquet-Ehrismann, and R.P. Tucker Teneurins, a transmembrane protein family involved in cell communication during neuronal development Cell. Mol. Life Sci. 64 2007 1452 1456
16. N. Kohmura, K. Senzaki, S. Hamada, N. Kai, R. Yasuda, M. Watanabe, H. Ishii, M. Yasuda, M. Mishina, and T. Yagi Diversity revealed by a novel family of cadherins expressed in neurons at a synaptic complex Neuron 20 1998 1137 1151
17. C.C. Kopczynski, G.W. Davis, and C.S. Goodman A neural tetraspanin, encoded by late bloomer, that facilitates synapse formation Science 271 1996 1867 1870
18. A. Krishnaswamy, M. Yamagata, X. Duan, Y.K. Hong, and J.R. Sanes Sidekick 2 directs formation of a retinal circuit that detects differential motion Nature 524 2015 466 470
19. M. Kurusu, A. Cording, M. Taniguchi, K. Menon, E. Suzuki, and K. Zinn A screen of cell-surface molecules identifies leucine-rich repeat proteins as key mediators of synaptic target selection Neuron 59 2008 972 985
20. E.Z. Kvon, T. Kazmar, G. Stampfel, J.O. Yáñez-Cuna, M. Pagani, K. Schernhuber, B.J. Dickson, and A. Stark Genome-scale functional characterization of Drosophila developmental enhancers in vivo Nature 512 2014 91 95
21. P. Langfelder, and S. Horvath WGCNA: an R package for weighted correlation network analysis BMC Bioinformatics 9 2008 559
22. J.N. Langley Note on Regeneration of Prae-Ganglionic Fibres of the Sympathetic J. Physiol. 18 1895 280 284
23. T. Lee, and L. Luo Mosaic analysis with a repressible cell marker for studies of gene function in neuronal morphogenesis Neuron 22 1999 451 461
24. C.H. Lee, T. Herman, T.R. Clandinin, R. Lee, and S.L. Zipursky N-cadherin regulates target specificity in the Drosophila visual system Neuron 30 2001 437 450
25. J.L. Lefebvre, D. Kostadinov, W.V. Chen, T. Maniatis, and J.R. Sanes Protocadherins mediate dendritic self-avoidance in the mammalian nervous system Nature 488 2012 517 521
26. K. Linnemannstöns, C. Ripp, M. Honemann-Capito, K. Brechtel-Curth, M. Hedderich, and A. Wodarz The PTK7-related transmembrane proteins off-track and off-track 2 are co-receptors for Drosophila Wnt2 required for male fertility PLoS Genet. 10 2014 e1004443
27. R.L. Matsuoka, K.T. Nguyen-Ba-Charvet, A. Parray, T.C. Badea, A. Chédotal, and A.L. Kolodkin Transmembrane semaphorin signalling controls laminar stratification in the mammalian retina Nature 470 2011 259 263
28. S.K. Miura, A. Martins, K.X. Zhang, B.R. Graveley, and S.L. Zipursky Probabilistic splicing of Dscam1 establishes identity at the level of single neurons Cell 155 2013 1166 1177
29. J. Morante, and C. Desplan The color-vision circuit in the medulla of Drosophila Curr. Biol. 18 2008 553 565
30. S. Nagarkar-Jaiswal, P.-T. Lee, M.E. Campbell, K. Chen, S. Anguiano-Zarate, M.C. Gutierrez, T. Busby, W.-W. Lin, Y. He, K.L. Schulze, and et al. A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila eLife 4 2015 1 28
31. M. Nakamura, D. Baldwin, S. Hannaford, J. Palka, and C. Montell Defective proboscis extension response (DPR), a member of the Ig superfamily required for the gustatory response to salt J. Neurosci. 22 2002 3463 3472
32. A. Nern, Y. Zhu, and S.L. Zipursky Local N-cadherin interactions mediate distinct steps in the targeting of lamina neurons Neuron 58 2008 34 41
33. A. Nern, B.D. Pfeiffer, and G.M. Rubin Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system Proc. Natl. Acad. Sci. USA 112 2015 E2967 E2976
34. M. O'Donnell, R.K. Chance, and G.J. Bashaw Axon growth and guidance: receptor regulation and signal transduction Annu. Rev. Neurosci. 32 2009 383 412
35. E. Özkan, R.A. Carrillo, C.L. Eastman, R. Weiszmann, D. Waghray, K.G. Johnson, K. Zinn, S.E. Celniker, and K.C. Garcia An extracellular interactome of immunoglobulin and LRR proteins reveals receptor-ligand networks Cell 154 2013 228 239
36. M.Y. Pecot, W. Tadros, A. Nern, M. Bader, Y. Chen, and S.L. Zipursky Multiple interactions control synaptic layer specificity in the Drosophila visual system Neuron 77 2013 299 310
37. M.Y. Pecot, Y. Chen, O. Akin, Z. Chen, C.Y.K. Tsui, and S.L. Zipursky Sequential axon-derived signals couple target survival and layer specificity in the Drosophila visual system Neuron 82 2014 320 333
38. G.C. Pipes, Q. Lin, S.E. Riley, and C.S. Goodman The Beat generation: a multigene family encoding IgSF proteins related to the Beat axon guidance molecule in Drosophila Development 128 2001 4545 4552
39. A.M. Schmitt, J. Shi, A.M. Wolf, C.-C. Lu, L.A. King, and Y. Zou Wnt-Ryk signalling mediates medial-lateral retinotectal topographic mapping Nature 439 2006 31 37
40. D. Schmucker, J.C. Clemens, H. Shu, C.A. Worby, J. Xiao, M. Muda, J.E. Dixon, and S.L. Zipursky Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity Cell 101 2000 671 684
41. T. Serafini, T.E. Kennedy, M.J. Galko, C. Mirzayan, T.M. Jessell, and M. Tessier-Lavigne The netrins define a family of axon outgrowth-promoting proteins homologous to C. elegans UNC-6 Cell 78 1994 409 424
42. K. Shen, and C.I. Bargmann The immunoglobulin superfamily protein SYG-1 determines the location of specific synapses in C. elegans Cell 112 2003 619 630
43. K. Shen, R.D. Fetter, and C.I. Bargmann Synaptic specificity is generated by the synaptic guidepost protein SYG-2 and its receptor, SYG-1 Cell 116 2004 869 881
44. H. Sink, E.J. Rehm, L. Richstone, Y.M. Bulls, and C.S. Goodman sidestep encodes a target-derived attractant essential for motor axon guidance in Drosophila Cell 105 2001 57 67
45. R.W. Sperry Chemoaffinity in the orderly growth of nerve fiber patterns and connections Proc. Natl. Acad. Sci. USA 50 1963 703 710
46. S.Y. Takemura, Z. Lu, and I.A. Meinertzhagen Synaptic circuits of the Drosophila optic lobe: the input terminals to the medulla J. Comp. Neurol. 509 2008 493 513
47. S.Y. Takemura, A. Bharioke, Z. Lu, A. Nern, S. Vitaladevuni, P.K. Rivlin, W.T. Katz, D.J. Olbris, S.M. Plaza, P. Winston, and et al. A visual motion detection circuit suggested by Drosophila connectomics Nature 500 2013 175 181
48. S. Takemura, C. Xu, Z. Lu, P. Rivlin, T. Parag, D. Olbris, S. Plaza, T. Zhao, W. Katz, L. Umayam, and et al. Synaptic circuits and their variations within different columns in the visual system of Drosophila Proc. Natl. Acad. Sci. USA 44 2015 13711 13716
49. K. Timofeev, W. Joly, D. Hadjieconomou, and I. Salecker Localized netrins act as positional cues to control layer-specific targeting of photoreceptor axons in Drosophila Neuron 75 2012 80 93
50. J.W. Triplett, and D.A. Feldheim Eph and ephrin signaling in the formation of topographic maps Semin. Cell Dev. Biol. 23 2012 7 15
51. K.J.T. Venken, and H.J. Bellen Chemical mutagens, transposons, and transgenes to interrogate gene function in Drosophila melanogaster Methods 68 2014 15 28
52. K.J.T. Venken, K.L. Schulze, N.A. Haelterman, H. Pan, Y. He, M. Evans-Holm, J.W. Carlson, R.W. Levis, A.C. Spradling, R.A. Hoskins, and H.J. Bellen MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes Nat. Methods 8 2011 737 743
53. A. Ward, W. Hong, V. Favaloro, and L. Luo Toll receptors instruct axon and dendrite targeting and participate in synaptic partner matching in a Drosophila olfactory circuit Neuron 85 2015 1013 1028
54. M.L. Winberg, L. Tamagnone, J. Bai, P.M. Comoglio, D. Montell, and C.S. Goodman The transmembrane protein Off-track associates with Plexins and functions downstream of Semaphorin signaling during axon guidance Neuron 32 2001 53 62
55. Q. Wu, and T. Maniatis A striking organization of a large family of human neural cadherin-like cell adhesion genes Cell 97 1999 779 790
56. M. Yamagata, and J.R. Sanes Dscam and Sidekick proteins direct lamina-specific synaptic connections in vertebrate retina Nature 451 2008 465 469
57. M. Yamagata, and J.R. Sanes Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins J. Neurosci. 32 2012 14402 14414
58. M. Yamagata, J.A. Weiner, and J.R. Sanes Sidekicks: synaptic adhesion molecules that promote lamina-specific connectivity in the retina Cell 110 2002 649 660
59. S.L. Zipursky, and W.B. Grueber The molecular basis of self-avoidance Annu. Rev. Neurosci. 36 2013 547 568
60. S.L. Zipursky, W.M. Wojtowicz, and D. Hattori Got diversity? Wiring the fly brain with Dscam Trends Biochem. Sci. 31 2006 581 588