-
4
-
-
0028947257
-
-
J. D. Bryngelson, J. N. Onuchic, N. D. Socci, and P. G. Wolynes, Proteins: Struct., Funct., Bioinf. 21, 167 (1995). 10.1002/prot.340210302
-
(1995)
Proteins: Struct., Funct., Bioinf.
, vol.21
, pp. 167
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
7
-
-
0033056708
-
-
C.-J. Tsai, S. Kumar, B. Ma, and R. Nussinov, Protein Sci. 8, 1181 (1999). 10.1110/ps.8.6.1181
-
(1999)
Protein Sci.
, vol.8
, pp. 1181
-
-
Tsai, C.-J.1
Kumar, S.2
Ma, B.3
Nussinov, R.4
-
12
-
-
31544472338
-
-
M. Kouza, M. S. Li, E. P. O'Brien, C.-K. Hu, and D. Thirumalai, J. Phys. Chem. A 110, 671 (2006). 10.1021/jp053770b
-
(2006)
J. Phys. Chem. A
, vol.110
, pp. 671
-
-
Kouza, M.1
Li, M.S.2
O'Brien, E.P.3
Hu, C.-K.4
Thirumalai, D.5
-
14
-
-
48749113763
-
-
S. Gosavi, P. C. Whitford, P. A. Jennings, and J. N. Onuchic, Proc. Natl. Acad. Sci. U. S. A. 105, 10384 (2008). 10.1073/pnas.0801343105
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 10384
-
-
Gosavi, S.1
Whitford, P.C.2
Jennings, P.A.3
Onuchic, J.N.4
-
16
-
-
63449135082
-
-
P. C. Whitford, J. K. Noel, S. Gosavi, A. Schug, K. Sanbonmatsu, and J. N. Onuchic, Proteins: Struct., Funct., Bioinf. 75, 430 (2009). 10.1002/prot.22253
-
(2009)
Proteins: Struct., Funct., Bioinf.
, vol.75
, pp. 430
-
-
Whitford, P.C.1
Noel, J.K.2
Gosavi, S.3
Schug, A.4
Sanbonmatsu, K.5
Onuchic, J.N.6
-
19
-
-
14044275168
-
-
Y. Levy, S. S. Cho, T. Shen, J. N. Onuchic, and P. G. Wolynes, Proc. Natl. Acad. Sci. U. S. A. 102, 2373 (2005). 10.1073/pnas.0409572102
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 2373
-
-
Levy, Y.1
Cho, S.S.2
Shen, T.3
Onuchic, J.N.4
Wolynes, P.G.5
-
20
-
-
36749023459
-
-
A. Schug, P. C. Whitford, Y. Levy, and J. N. Onuchic, Proc. Natl. Acad. Sci. U. S. A. 104, 17674 (2007). 10.1073/pnas.0706077104
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 17674
-
-
Schug, A.1
Whitford, P.C.2
Levy, Y.3
Onuchic, J.N.4
-
22
-
-
77952717308
-
-
P. C. Whitford, P. Geggier, R. B. Altman, S. C. Blanchard, J. N. Onuchic, and K. Y. Sanbonmatsu, RNA 16, 1196 (2010). 10.1261/rna.2035410
-
(2010)
RNA
, vol.16
, pp. 1196
-
-
Whitford, P.C.1
Geggier, P.2
Altman, R.B.3
Blanchard, S.C.4
Onuchic, J.N.5
Sanbonmatsu, K.Y.6
-
23
-
-
79952291930
-
-
R. Nechushtai, H. Lammert, D. Michaeli, Y. Eisenberg-Domovich, J. A. Zuris, M. A. Luca, D. T. Capraro, A. Fish, O. Shimshon, M. Roy, A. Schug, P. C. Whitford, O. Livnah, J. N. Onuchic, and P. A. Jennings, Proc. Natl. Acad. Sci. U. S. A. 108, 2240 (2011). 10.1073/pnas.1019502108
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 2240
-
-
Nechushtai, R.1
Lammert, H.2
Michaeli, D.3
Eisenberg-Domovich, Y.4
Zuris, J.A.5
Luca, M.A.6
Capraro, D.T.7
Fish, A.8
Shimshon, O.9
Roy, M.10
Schug, A.11
Whitford, P.C.12
Livnah, O.13
Onuchic, J.N.14
Jennings, P.A.15
-
25
-
-
84906328200
-
-
X. Lin, N. Eddy, J. K. Noel, P. C. Whitford, Q. Wang, J. Ma, and J. N. Onuchic, Proc. Natl. Acad. Sci. U. S. A. 111, 12049 (2014). 10.1073/pnas.1412849111
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 12049
-
-
Lin, X.1
Eddy, N.2
Noel, J.K.3
Whitford, P.C.4
Wang, Q.5
Ma, J.6
Onuchic, J.N.7
-
26
-
-
0033548553
-
-
N. Ferguson, A. P. Capaldi, R. James, C. Kleanthous, and S. E. Radford, J. Mol. Biol. 286, 1597 (1999). 10.1006/jmbi.1998.2548
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1597
-
-
Ferguson, N.1
Capaldi, A.P.2
James, R.3
Kleanthous, C.4
Radford, S.E.5
-
27
-
-
38049140954
-
-
L. Sutto, J. Lätzer, J. A. Hegler, D. Ferreiro, and P. G. Wolynes, Proc. Natl. Acad. Sci. U. S. A. 104, 19825 (2007). 10.1073/pnas.0709922104
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 19825
-
-
Sutto, L.1
Lätzer, J.2
Hegler, J.A.3
Ferreiro, D.4
Wolynes, P.G.5
-
28
-
-
76249117417
-
-
B. G. Wensley, S. Batey, F. A. C. Bone, Z. M. Chan, N. R. Tumelty, A. Steward, L. G. Kwa, A. Borgia, and J. Clarke, Nature 463, 685 (2010). 10.1038/nature08743
-
(2010)
Nature
, vol.463
, pp. 685
-
-
Wensley, B.G.1
Batey, S.2
Bone, F.A.C.3
Chan, Z.M.4
Tumelty, N.R.5
Steward, A.6
Kwa, L.G.7
Borgia, A.8
Clarke, J.9
-
30
-
-
84862301192
-
-
J. K. Noel, A. Schug, W. Verma, A. Wenzel, A. E. Garcia, and J. N. Onuchic, J. Phys. Chem. B 116, 6880 (2012). 10.1021/jp212623d
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 6880
-
-
Noel, J.K.1
Schug, A.2
Verma, W.3
Wenzel, A.4
Garcia, A.E.5
Onuchic, J.N.6
-
35
-
-
0028203301
-
-
M. Lindahl, L. A. Svensson, A. Liljas, S. E. Sedelnikova, I. A. Eliseikina, N. P. Fomenkova, N. Nevskaya, S. V. Nikonov, M. B. Garber, T. A. Muranova, A. I. Rykonova, and R. Amons, EMBO J. 13, 1249 (1994).
-
(1994)
EMBO J.
, vol.13
, pp. 1249
-
-
Lindahl, M.1
Svensson, L.A.2
Liljas, A.3
Sedelnikova, S.E.4
Eliseikina, I.A.5
Fomenkova, N.P.6
Nevskaya, N.7
Nikonov, S.V.8
Garber, M.B.9
Muranova, T.A.10
Rykonova, A.I.11
Amons, R.12
-
38
-
-
33746652529
-
-
R. B. Best, K. Linddorf-Larsen, M. A. DePristo, and M. Vendruscolo, Proc. Natl. Acad. Sci. U. S. A. 103, 10901 (2006). 10.1073/pnas.0511156103
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 10901
-
-
Best, R.B.1
Linddorf-Larsen, K.2
DePristo, M.A.3
Vendruscolo, M.4
-
40
-
-
84940214914
-
-
A. Perez, A. Roy, K. Kasavajhala, A. Wagaman, K. A. Dill, and J. L. MacCallum, Proteins: Struct., Funct., Bioinf. 82, 2671 (2014). 10.1002/prot.24633
-
(2014)
Proteins: Struct., Funct., Bioinf.
, vol.82
, pp. 2671
-
-
Perez, A.1
Roy, A.2
Kasavajhala, K.3
Wagaman, A.4
Dill, K.A.5
MacCallum, J.L.6
-
41
-
-
34249945151
-
-
L.-W. Yang, E. Eyal, C. Chennubhotla, J. Jee, A. M. Groneborn, and I. Bahar, Structure 15, 741 (2007). 10.1016/j.str.2007.04.014
-
(2007)
Structure
, vol.15
, pp. 741
-
-
Yang, L.-W.1
Eyal, E.2
Chennubhotla, C.3
Jee, J.4
Groneborn, A.M.5
Bahar, I.6
-
46
-
-
33744829290
-
-
I. A. Hubner, M. Lindberg, E. Haglund, M. Oliveberg, and E. I. Shakhnovich, J. Mol. Biol. 359, 1075 (2006). 10.1016/j.jmb.2006.04.015
-
(2006)
J. Mol. Biol.
, vol.359
, pp. 1075
-
-
Hubner, I.A.1
Lindberg, M.2
Haglund, E.3
Oliveberg, M.4
Shakhnovich, E.I.5
-
47
-
-
33947721090
-
-
L. Wu, J. Zhang, J. Wang, W. F. Li, and W. Wang, Phys. Rev. E 75, 031914 (2007). 10.1103/PhysRevE.75.031914
-
(2007)
Phys. Rev. e
, vol.75
-
-
Wu, L.1
Zhang, J.2
Wang, J.3
Li, W.F.4
Wang, W.5
-
49
-
-
84856068609
-
-
E. Haglund, J. Danielsson, S. Kadhirvel, M. O. Lindberg, D. T. Logan, and M. Oliveberg, J. Biol. Chem. 287, 2731 (2012). 10.1074/jbc.M111.312447
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 2731
-
-
Haglund, E.1
Danielsson, J.2
Kadhirvel, S.3
Lindberg, M.O.4
Logan, D.T.5
Oliveberg, M.6
-
54
-
-
77954276842
-
-
J. K. Noel, P. C. Whitford, K. Y. Sanbonmatsu, and J. N. Onuchic, Nucleic Acids Res. 38, W657 (2010). 10.1093/nar/gkq498
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W657
-
-
Noel, J.K.1
Whitford, P.C.2
Sanbonmatsu, K.Y.3
Onuchic, J.N.4
-
56
-
-
84950110007
-
-
See supplementary material at http://dx.doi.org/10.1063/1.4936881 E-JCPSA6-143-035598 for a comparison of simulated and experimental φ -values.
-
-
-
-
59
-
-
0028674385
-
-
W. F. van Gunsteren, R. M. Brunne, P. Gros, R. C. van Schaik, C. A. Schiffer, and A. E. Torda, Methods Enzymol. 239, 619 (1994). 10.1016/S0076-6879(94)39024-X
-
(1994)
Methods Enzymol.
, vol.239
, pp. 619
-
-
Van Gunsteren, W.F.1
Brunne, R.M.2
Gros, P.3
Van Schaik, R.C.4
Schiffer, C.A.5
Torda, A.E.6
-
60
-
-
45849131354
-
-
O. F. Lange, N. A. Lakomek, C. Fares, G. Schröder, K. F. A. Walter, S. Becker, J. Meiler, H. Grubmüller, C. Griesinger, and B. L. de Groot, Science 320, 1471 (2008). 10.1126/science.1157092
-
(2008)
Science
, vol.320
, pp. 1471
-
-
Lange, O.F.1
Lakomek, N.A.2
Fares, C.3
Schröder, G.4
Walter, K.F.A.5
Becker, S.6
Meiler, J.7
Grubmüller, H.8
Griesinger, C.9
De Groot, B.L.10
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