Erratum: Expression of Concern: Noncontiguous finished genome sequence and description of Kallipyga gabonensis sp. Nov (Noncontiguous finished genome sequence and description of Kallipyga gabonensis sp. nov. (2016) 9 (15–23), (S2052297515001018), (10.1016/j.nmni.2015.11.007));Noncontiguous finished genome sequence and description of Kallipyga gabonensis sp. nov.

New Microbes and New Infections

Volumn 9, Issue , 2016, Pages 15-23

  Mourembou, G ^a,b   Rathored, J ^a   Lekana Douki, J B ^c,d   Ndjoyi Mbiguino, A ^d   Fenollar, F ^a   Michelle, C ^a   Fournier, P E ^a   Raoult, D ^a,e   Lagier, J C ^a  

^a AIX MARSEILLE UNIVERSITÉ   (France)

^b Ecole Doctorale Régionale d'Afrique Centrale en Infectiologie Tropicale   (Gabon)

^c CENTRE INTERNATIONAL DE RECHERCHES MÉDICALES DE FRANCEVILLE   (Gabon)

^d UNIVERSITÉ DES SCIENCES DE LA SANTÉ   (Gabon)

^e KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

Author keywords

Culturomics; Gabon; Genome; Kallipyga gabonensissp. nov.; Taxonogenomics

Indexed keywords

AMIKACIN; AMOXICILLIN; AMOXICILLIN PLUS CLAVULANIC ACID; CILASTATIN PLUS IMIPENEM; CIPROFLOXACIN; CLINDAMYCIN; COTRIMOXAZOLE; DOXYCYCLINE; ERYTHROMYCIN; GENTAMICIN; METRONIDAZOLE; NITROFURANTOIN; OXACILLIN; RIFAMPICIN; RNA 16S; TOBRAMYCIN; VANCOMYCIN;

ADOLESCENT; ANAEROBIC BACTERIUM; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; CELL MOTILITY; DNA BASE COMPOSITION; FECES ANALYSIS; GABONESE; GENE SEQUENCE; KALLIPYGA GABONENSIS; MALE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SPOROGENESIS; TRANSMISSION ELECTRON MICROSCOPY;

EID: 84949782097     PISSN: 20522975     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.nmni.2024.101360     Document Type: Erratum

References (29)

1. Reddy E.A., Shaw A.V., Crump J.A. Community-acquired bloodstream infections in Africa: a systematic review and meta-analysis. Lancet Infect Dis 2010, 10:417-432.
2. Wilairatana P., Meddings J.B., Ho M., Vannaphan S., Looareesuwan S. Increased gastrointestinal permeability in patients with Plasmodium falciparum malaria. Clin Infect Dis 1997, 24:430-435.
3. Raoult D., Henrissat B. Are stool samples suitable for studying the link between gut microbiota and obesity?. Eur J Epidemiol 2014, 29:307-309.
4. Lagier J.C., Armougom F., Million M., Hugon P., Pagnier I., Robert C., et al. Microbial culturomics: paradigm shift in the human gut microbiome study. Clin Microbiol Infect 2012, 18:1185-1193.
5. Lagier J.C., El Karkouri K., Nguyen T.T., Armougom F., Raoult D., Fournier P.E. Non-contiguous-finished genome sequence and description of Anaerococcus senegalensis sp. nov. Stand Genomic Sci 2012, 6:116-125.
6. Lagier J.C., Armougom F., Mishra A.K., Nguyen T.T., Raoult D., Fournier P.E. Non-contiguous-finished genome sequence and description of Alistipes timonensis sp. nov. Stand Genomic Sci 2012, 6:315-324.
7. Mishra A.K., Lagier J.C., Robert C., Raoult D., Fournier P.E. Non-contiguous-finished genome sequence and description of Clostridium senegalense sp. nov. Stand Genomic Sci 2012, 6:386-395.
8. Michra A.K., Lagier J.C., Robert C., Raoult D., Fournier P.E. Non-contiguous-finished genome sequence and description of Peptinophilus timonensis sp. nov. Stand Genomic Sci 2012, 7:1-11.
9. Stackebrandt E., Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006, 33:152-155.
10. Nkamga V.D., Huynh H.T., Aboudharam G., Ruimy R., Drancourt M. Diversity of human-associated Methanobrevibacter smithii isolates revealed by multispacer sequence typing. Curr Microbiol 2015, 70:810-815.
11. Benson D.A., Karsch-Mizrachi I., Clark K., Lipman D.J., Ostell J., Sayers E.W. GenBank. Nucl Acids Res 2012, 40:D48-D53.
12. Lowe T.M., Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucl Acids Res 1997, 25:955-964.
13. Lagesen K., Hallin P., Rodland E.A., Staerfeldt H.H., Rognes T., Ussery D.W. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucl Acids Res 2007, 35:3100-3108.
14. Bendtsen J.D., Nielsen H., von Heijne G., Brunak S. Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 2004, 340:783-795.
15. Krogh A., Larsson B., von Heijne G., Sonnhammer E.L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001, 305:567-580.
16. Zhou Y., Liang Y., Lynch K.H., Dennis J.J., Wishart D.S. PHAST: a fast phage search tool. Nucl Acids Res 2011, 39:W347-W352.
17. Aziz R.K., Bartels D., Best A.A., DeJongh M., Disz T., Edwards R.A., et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics 2008, 9:75.
18. Rutherford K., Parkhill J., Crook J., Horsnell T., Rice P., Rajandream M.A., et al. Artemis: sequence visualization and annotation. Bioinformatics 2000, 16:944-945.
19. Carver T., Thomson N., Bleasby A., Berriman M., Parkhill J. DNAPlotter: circular and linear interactive genome visualization. Bioinformatics 2009, 25:119-120.
20. Darling A.C., Mau B., Blattner F.R., Perna N.T. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 2004, 14:1394-1403.
21. Ramasamy D., Mishra A.K., Lagier J.C., Padhmanabhan R., Rossi M., Sentausa E., et al. A polyphasic strategy incorporating genomic data for the taxonomic description of new bacterial species. Int J Syst Evol Microbiol 2014, 64:384-391.
22. Lechner M., Findeiss S., Steiner L., Marz M., Stadler P.F., Prohaska S.J. Proteinortho: detection of (co)orthologs in large-scale analysis. BMC Bioinformatics 2011, 12:124.
23. Gouret P, Paganini J, Dainat J, Louati D, Darbo E, Pontarotti P, et al. Integration of evolutionary biology concepts for functional annotation and automation of complex research in evolution: the multi-agent software system DAGOBAH. New York: Springer; p. 71-87.
24. Gouret P., Vitiello V., Balandraud N., Gilles A., Pontarotti P., Danchin E.G. FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform. BMC Bioinformatics 2005, 6:198.
25. Ludwig W., Schleifer K.H., Whitman W.B. Revised road map to the phylum Firmicutes. Bergey's manual of systematic bacteriology 2009, Springer-Verlag, New York, p. 3:1-13. 2nd ed. P. De Vos, G. Garrity (Eds.).
26. Hugon P., Ramasamy D., Robert C., Couderc C., Raoult D., Fournier P.E. Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI. Stand Genomic Sci 2013, 8:500-515.
27. Auch A.F., Von Jan M., Klenk H.P., Göker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2010, 2:117-134.
28. Meier-Kolthoff J.P., Auch A.F., Klenk H.P., Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013, 14:60.
29. Pagnier I., Croce O., Robert C., Raoult D., La Scola B. Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium. Stand Genomic Sci 2014, 9:704-717.