Erratum: Transcriptome analysis identifies genes involved in adventitious branches formation of Gracilaria lichenoides in vitro (Scientific Reports (2015) 5:17099 doi: 10.1038/srep17099);Transcriptome analysis identifies genes involved in adventitious branches formation of Gracilaria lichenoides in vitro

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Wang, Wenlei ^a   Li, Huanqin ^a   Lin, Xiangzhi ^b   Yang, Shanjun ^b   Wang, Zhaokai ^b   Fang, Baishan ^a  

^a XIAMEN UNIVERSITY   (China)

^b SOA Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources Key Laboratory of Marine Genetic   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA; TRANSCRIPTOME;

BIOLOGY; DNA SEQUENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE ONTOLOGY; GENETIC ASSOCIATION STUDY; GENETICS; GRACILARIA; HIGH THROUGHPUT SEQUENCING; MOLECULAR GENETICS; PHENOTYPE; PLANT GENE; PROCEDURES; QUANTITATIVE TRAIT; TISSUE CULTURE TECHNIQUE;

COMPUTATIONAL BIOLOGY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENE ONTOLOGY; GENES, PLANT; GENETIC ASSOCIATION STUDIES; GRACILARIA; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE ANNOTATION; PHENOTYPE; QUANTITATIVE TRAIT, HERITABLE; SEQUENCE ANALYSIS, DNA; TISSUE CULTURE TECHNIQUES; TRANSCRIPTOME;

EID: 84949681142     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep20457     Document Type: Erratum

References (126)

1. Gao, S. et al. A Strategy for the Proliferation of Ulva prolifera, MainCausative Species of Green Tides, with Formation of Sporangia by Fragmentation. PloS One, 5, e8571 (2010).
2. Gao, S., Shen, S. D., Wang, G. C., Niu, J. F., Lin, A. P. & Pan, G. H. PSI-Driven Cyclic Electron Flow Allows Intertidal Macro-Algae Ulva sp. (Chlorophyta) to Survive in Desiccated Conditions. Plant Cell Physiol. 52, 885-893 (2011).
3. Yang, R. L., Zhou, W., Shen, S. D., Wang, G. C., He, L. W. & Pan, G. H. Morphological and photosynthetic variations in the process of spermatia formation from vegetative cells in Porphyra yezoensis Ueda (Bangiales, Rhodophyta) and their responses to desiccation. Planta, 235, 885-893 (2012).
4. Gao, S. et al. The physiological links of the increased photosystem II activityin moderately desiccated Porphyra haitanensis (Bangiales, Rhodophyta) to the cyclic electron flow during desiccation and re-hydration. Photosynth. Res. 116, 45-54 (2013).
5. Wang, W. L. et al. Exploring valid internal-control genes in Porphyra yezoensis (Bangiaceae) during stress response conditions. Chinese Journal of Oceanology and Limnology 32, 783-791 (2014).
6. Schramm, W. Cultivation of unattached seaweeds. Seaweed resources in Europe, uses and potential (ed. Guiry, M. D. & Blunden, G.) 379-408 (Wiley, New York, 1991).
7. Armisen, R. World-wide use and importance of Gracilaria. J. Appl. Phycol. 7, 231-243 (1995).
8. Bixler, H. J. & Porse, H. A decade of change in the seaweed hydrocolloids industry. J. Appl. Phycol. 23, 321-335 (2011).
9. Xu, Y. J., Fang, J. G. & Wei, W. Application of Gracilaria lichenoides (Rhodophyta) for alleviating excess nutrients in aquaculture. J. Appl. Phycol. 20, 199-203 (2008).
10. Roberts, D. A., Paul, N. A., Dworjanyn, S. A., Bird, M. I. & Nys, R. D. Biochar from commercially cultivated seaweed for soil amelioration. Sci. Rep. 5, 9665 (2015).
11. Stevens, D. R. & Purton, S. Genetic engineering of eucaryotic algae: progress and prospects. J. Phycol. 33, 713-722 (1997).
12. Yokoya, N. S. & Yoneshigue-Valentin, Y. Micropropagation as a tool for sustainable utilization and conservation of populations of Rhodophyta. Braz. J. Pharmacogn. 21, 334-339 (2011).
13. Gusev, M. V., Tambiev, A. H., Kirikova, N. N., Shelyastina, N. N. & Aslanyan, R. R. Callus formation in seven species of agarophyte marine algae. Mar. Biol. 95, 593-597 (1987).
14. Kaczyna, F. & Megne,t W. H. The effects of glycerol and plant growth regulators on Gracilaria verrucosa (Gigartinales, Rhodophyceae). Hydrobiologia 268, 57-64. (1993).
15. Huang, W. & Fujita, Y. Callus induction and thallus regeneration in some species of red algae. Phycol. Res. 45, 105-111 (1997).
16. Yokoya, N. S., Kakita, H., Obika, H. & Kitamura, T. Effects of environmental factors and plant growth regulators on growth of the red alga Gracilaria vermiculophylla from Shikoku Island, Japan. Hydrobiologia 398/399, 339-347 (1999).
17. Yokoya, N. S. Apical callus formation and plant regeneration controlled by plant growth regulators on axenic culture of red alga Gracilariopsis tenuifrons (Gracilariales, Rhodophyta). Phycol. Res. 48, 133-142 (2000).
18. Collantes, G., Melo, C. & Candia, A. Micropropagation by explants of Gracilaria chilensis Bird, McLachlan and Oliveira Gloria. J. Appl. Phycol. 16, 203-213 (2004).
19. Yokoya, N. S., West, J. A. & Luchi, A. E. Effects of plant growth regulators on callus formation, growth and regeneration in axenic tissue cultures of Gracilaria tenuistipitata and Gracilaria perplexa (Gracilariales, Rhodophyta). Phycol. Res. 52, 244-254 (2004).
20. Kumar, G. R., Reddy, C. R. K. & Jha, B. Callus induction and thallus regeneration from callus of phycocolloid yielding seaweeds from the Indian coast. J. Appl. Phycol. 19, 15-25 (2007).
21. Ramlov, F., Plastino, E. M. & Yokoya, N. S. Growth, callus formation and plant regeneration in color morphs of Gracilaria domingensis (Gracilariales, Rhodophyta) cultured under different irradiance and plant growth regulators. Phycologia 52(6), 508-516 (2013).
22. Chen, C. S., Zhang, J. R. & Lin, A. F. Tissue culture for five species of Gracilariales in vitro (in Chinese). J. Fujian Fisheries 2, 19-24 (1987).
23. Tan, E. L. Tissue culture and protoplast isolation of Gracilaria changii (Rhodophyta). Master's thesis, University of Malaya, Kuala Lumpur (1999).
24. Xie, X. J., Wang, G. C., Pan, G. H., Gao, S., Xu, P. & Zhu, J. Y. Variations in morphology and PSII photosynthetic capabilities during the early development of tetraspores of Gracilaria vermiculophylla (Ohmi) Papenfuss (Gracilariales, Rhodophyta). BMC Developmental Biol. 10, 43 (2010).
25. Yeong, H. Y., Phang, S. M., Reddy, C. R. K. & Khalid, N. Production of clonal planting materials from Gracilaria changii and Kappaphycus alvarezii through tissue culture and culture of G. changii explants in airlift photobioreactors. J. Appl. Phycol. 26, 729-746 (2014).
26. Reddy, C. R. K., Jha, B., Fujita, Y. & Ohno, M. Seaweed micropropagation techniques and their potentials: an overview. J. Appl. Phycol. 20, 619-632 (2008b).
27. Baweja, P., Sahoo, D., García-Jiménez, P. & Robaina, R. R. Seaweed tissue culture as applied to biotechnology: Problems, achievements and prospects. Phycol. Res. 57, 45-58 (2009).
28. Reddy, C. R. K., Gupta, V. & Jha, B. Developments in biotechnology of red algae. Red algae in genomic age (ed. Chapman, D. J. & Seckbach, J.) 307-341 (Springer Sci. Business Media, New York, 2010).
29. Trewavas, A. J. Growth substance sensitivity: the limiting factor in plant development. Plant Physiol. 55, 60-72 (1982).
30. Lipperheide, M. A., Francisco, J., Rodríyuez, E. & Evans, L. V. Facts, problems, and needs in seaweed tissue culture: an appraisal. J. Phycol. 31, 677-688 (1995).
31. Yokoya, N. S. et al. Endogenous cytokinins, auxins and abscisic acid in red algae from Brazil. J. Phycol. 46, 1198-1205 (2010).
32. Ying, H. et al. Auxin-induced WUS expression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis. Plant J. 59, 448-460 (2009).
33. Su, Y. H. et al. Auxin-induced WUS expression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis. Plant J. 59, 448-460 (2009).
34. Henrichs, S. et al. Regulation of ABCB1/PGP1-catalysed auxin transport by linker phosphorylation. EMBOI J. 31, 2965-2980 (2012).
35. Ozsolak, F. & Milos, P. M. RNA sequencing: advances, challenges and opportunities. Nat. Rev. Genet. 12, 87-98 (2011)
36. Van Verk, M. C., Hickman, R., Pieterse, C. M. J. & Van Wees, S. C. M. RNA-Seq: revelation of the messengers. Trends Plant Sci. 18, 175-179 (2013).
37. Xu, J. Y. et al. Comparative analysis of four essential Gracilariaceae species in China based on whole transcriptomic sequencing. Acta Oceanol. Sin. 33, 54-62 (2014).
38. Guillard, R. R. L. Culture of phytoplankton for feeding marine invertebrates. Culture of marine invertebrate animals (ed. Smith, W. L. & Chanley, M. H.) 29-60 (Plenum, New York, 1975).
39. Shen, S. D., Wu, X. J., Yan, B. L. & He, L. H. Tissue culture of three species of Laurencia complex. Chin. J. Oceanol. Limnol. 28, 514-520 (2010).
40. Chan, C. X., Teo, S. S., Ho, C. L., Othman, R. Y. & Phang, S. M. Optimisation of RNA extraction from Gracilaria changii (Gracilariales, Rhodophyta). J. Appl. Phycol. 16, 297-301 (2004).
41. Brent, Ewing. & Phil, Green. Base-Calling of Automated Sequencer TracesUsingPhred. II. Error Probabilities. Genome Res. 8, 186-194 (1998).
42. Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29, 644-652 (2011).
43. Ali, M., Williams, A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628 (2008).
44. Iseli, C., Jongeneel, C. V. & Bucher P. ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proceeding of the Seventh International Conference on Intelligent Systems for Molecular Biology (ed. Lengauer, T., Schneider, R., Bork, P., Brutlag, D., Glasgow, J., Mewes, H. W. & Zimmer, R.) 138-148 (AAAI, CA, 1999).
45. Conesa, A. et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676 (2005).
46. Ye, J. et al. WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 34, W293-W297 (2006).
47. Kanehisa, M. et al. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36, D480-D484 (2006).
48. Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C. & Kanehisa, M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35, W182-W185 (2007).
49. Audic, S. & Claverie, J. M. The significance of digital gene expression profiles. Genome. Res. 7, 986-995 (1997).
50. Thiel, T., Michalek, W. & Varshney, R. K. Graner Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgareL.) Theor. Appl. Genet. 106, 411-422 (2003).
51. Hagen, G. The control of gene expression by auxin. Plant Hormones-Physiology, Biochemistry and Molecular Biology (ed. Davies, P. J.) 228-245 (Kluwer Academic Publishers, Dordrecht, 1995).
52. Grossman, A. R. Paths towards algal genomics. Plant Physiol. 137, 410-427 (2005).
53. Walker, T. L., Collet, C. & Purton, S. Algal transgenic in the genomic era. J. Phycol. 41, 1077-1093 (2005).
54. Flintoft, L. Transcriptomics: Measuring gene expression in non-model organisms. Nat. Rev. Genet. 12, 742 (2011).
55. Muers, M. Gene expression: Transcriptome to proteome and back to genome. Nat. Rev. Genet. 12, 518 (2011).
56. Mravec, J. et al. Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development. Development 135, 3345-3354 (2008).
57. Bail, A. L. et al. Auxin Metabolism and Function in the Multicellular Brown Alga Ectocarpus siliculosus. Plant Physiol. 153, 128-144 (2010).
58. Murphy, A. S., Hoogner, K. R., Peer, W. A. & Taiz, L. Identification, purification, and molecular cloning of N-1-naphthylphthalmic acid-binding plasma membrane-associated aminopeptidases from Arabidopsis. Plant Physiol. 128, 935-950 (2002).
59. Geisler, M. et al. Cellular efflux of auxin catalyzed by the Arabidopsis MDR/PGP transporter AtPGP1. Plant J. 44, 179-194 (2005).
60. Rojas-Pierce, M. et al. Arabidopsis P-Glycoprotein19 Participates in the Inhibition of Gravitropism by Gravacin. Chem. Biol. 14, 1366-1376 (2007).
61. Nagashima, A., Uehara, Y. & Sakai, T. The ABC Subfamily B Auxin Transporter AtABCB19 is Involved in the Inhibitory Effects of N-1-Naphthyphthalamic Acid on the Phototropic and Gravitropic Responses of Arabidopsis Hypocotyls. Plant Cell Physiol. 49(8), 1250-1255 (2008).
62. Kim, J. Y. et al. Identification of an ABCB/P-glycoprotein-specific inhibitor of auxin transport by chemical genomics. J. Biol. Chem. 285, 23309-23317 (2010).
63. Bailly, A. et al. Modulation of P-glycoproteins by auxin transport inhibitors is mediated by interaction with immunophilins. J. Biol. Chem. 283, 21817-21826 (2008).
64. Lomax, T. L., Muday, G. K. & Rubery, P. H. Auxin transport. Plant Hormones: Physiology, Biochemistry and Molecular Biology (ed. Davies, P. J.) 509-530 (Kluwer Academic Publishers, Dordrecht, 1995).
65. Luschnig, C. Auxin transport: why plants like to think BIG. Curr. Biol. 11, R831-R833 (2001).
66. Guilfoyle, T. J. & Hagen, G. Auxin response factors. Curr. Opin. Plant Biol. 10, 453-460 (2007).
67. Gray, W. M., Kepinski, S., Rouse, D., Leyser, O. & Estelle, M. Auxin regulates SCF TIR1-dependent degradation of Aux/IAA proteins. Nature 414, 271-276 (2001).
68. Tiwari, S. B., Hagen, G. & Guilfoyle, T. The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 15, 533-543 (2003).
69. Villalobos, C. et al. A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin. Nat. Chem. Biol. 18, 477-485 (2012).
70. Santner, A. & Estelle, M. Recent advances and emerging trends in plant hormone signaling. Nature 459, 1071-1078 (2009).
71. Lau, S., Shao, N., Bock, R., Jürgens, G. & Smet, I. D. Auxin signaling in algal lineages: fact or myth? Trends Plant Sci. 14, 182-188 (2009).
72. Stirk, W. A. et al. Cytokinins in macroalgae. Plant Growth Regul. 41, 13-24 (2003).
73. Kerstetter, R. A. & Hake, S. Shoot meristem formation in vegetative development. Plant Cell 9, 1001-1010 (1997).
74. Leibfried, A. et al. WUSCHEL controls meristem function by direct Regulation of cytokinin-inducible response regulators. Nature 438, 1172-1175 (2005).
75. Cheng, Z. J. et al. Pattern of Auxin and Cytokinin Responses for Shoot Meristem Induction Results from the Regulation of Cytokinin Biosynthesis by AUXIN RESPONSE FACTOR. 3 Plant Physiol. 161, 240-251 (2013).
76. Hilhorst, H. W. M. & Karssen, C. M. Seed dormancy and germination: the role of abscisic acid and gibberellins and the importance of hormone mutants. Plant Growth Regul. 11, 225-238 (1992).
77. Rohde, A., Kurup, S. & Holdsworth, M. ABI3 emerges from the seed. Trends Plant Sci. 5, 418-419 (2000b).
78. Xiong, L. M. & Zhu, J. K. Regulation of Abscisic Acid Biosynthesis. Plant Physiol. 133, 29-36 (2003).
79. Mondal, T. K., Bhattacharya, A., Sood, A. & Ahuja, P. S. Factors affecting germination and conversion frequency of somatic embryos of Tea [Camellia sinensis (L.) O. Kuntze]. J. Plant Physiol. 159, 1317-1321 (2002).
80. Sharma, P., Pandey, S., Bhattacharya, A., Nagar, P. K. & Ahuja, P. S. ABA associated biochemical changes during somatic embryo development in Camellia sinensis (L.) O. Kuntze. J. Plant Physiol. 161, 1269-1276 (2004).
81. Hauser, F., Waadt, R. & Schroeder, J. I. Evolution of Abscisic Acid Synthesis and Signaling Mechanisms. Curr. Biol. 21, R346-R355 (2011).
82. Umezawa, T. et al. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc. Natl. Acad. Sci. USA 106, 17588-17593 (2009).
83. Vlad, F. et al. Protein Phosphatases 2C Regulate the Activation of the Snf1-Related Kinase OST1 by Abscisic Acid in Arabidopsis. Plant Cell 21, 3170-3184 (2009).
84. Cutler, S. R., Rodriguez, P. L., Finkelstein, R. R. & Abrams, S. R. Abscisic acid: emergence of a core signaling network. Annu. Rev. Plant. Biol. 61, 651-679 (2010).
85. Singh, A., Jani, k., Sagervanshi, A. & Agrawal, P. K. High-Frequency Regeneration by Abscisic Acid (ABA) from Petiole Callus of Jatropha curcas. In Vitro Cell Dev. Biol. Plant 50, 638-645 (2014).
86. Hatanaka, T., Sawabe, E., Azuma, T., Uchida, N. & Yasuda, T. The role of ethylene in somatic embryogenesis from leaf discs of Coffea canephora. Plant Sci. 107, 199-204 (1995).
87. Huang, Y., Li, H., Hutchison, C. E., Laskey, J. & Kieber, J. J. Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis. Plant J. 33, 221-233 (2003).
88. Mantiri, F. R. et al. The transcription factor MtSERF1 of the ERF subfamily identified by transcriptional profiling is required for somatic embryogenesis induced by auxin plus cytokinin in Medicago truncatula. Plant Physiol. 146, 1622-1636 (2008).
89. Ruzicka, K. et al. Ethylene regulates root growth through effects on auxin biosynthesis and transport-dependent auxin distribution. Plant cell 19, 2197-2212 (2007).
90. Muday, G. K., Rahman, A. & Binder, B. M. Auxin and ethylene: collaborators or competitors? Trends Plant Sci. 17, 181-195 (2012).
91. Topping, J. F., May, V. J., Muskett, P. R. & Lindsey, K. Mutations in the HYDRA1 gene of Arabidopsis perturb cell shape and disrupt embryonic and seedling morphogenesis. Development 124, 4415-4424 (1997).
92. Diener, A. C. et al. Sterol methyltransferase 1 controls the level of cholesterol in plants. Plant Cell 12, 853-870 (2000).
93. Khripach, V., Zhabinskii, V. & de Groot, A. Twenty years of brassinosteroids: steroidal plant hormones warrant better crops for the XXI century. Ann. Bot. 86, 441-447 (2000).
94. Nemhauser, J., Mockler, T. C. & Chory, J. Interdependency of brassinosteroid and auxin signaling in Arabidopsis. PloS Biol. 2, e258 (2004).
95. Clouse, S. D. & Sasse, J. M. BRASSINOSTEROIDS: essential regulators of plant growth and development. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49, 427-451 (1998).
96. Hardtke, C. S., Dorcey, E., Osmont, K. S. & Sibout, R. Phytohormone collaboration: zooming in on auxin-brassinosteroid interactions. Trends Cell Biol. 17, 485-492 (2007).
97. Khan, W., Prithiviraj, B. & Smith, D. L. Photosynthetic responses of corn and soybean to foliar application of salicylates. J. Plant Physiol. 160, 485-492 (2003).
98. Zhang, Y., Fan, W., Kinkema, M., Li, X. & Dong, X. Interaction of NPR1 with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR1gene. Proc. Natl. Acad. Sci. USA 96, 6523-6528 (1999).
99. Kinkema, M., Fan, W. & Dong, X. Nuclear localization of NPR1 is required for activation of PR gene expression. Plant Cell 12, 2339-2350 (2000).
100. Zander, M., Camera, S. L., Lamotte, O., Metraux, J. P. & Gatz, C. Arabidopsis thaliana class-II TGA Transcription factors are essential activators of jasmonic acid/ethylene-induced defense responses. Plant J. 61, 200-210 (2010).
101. Pius, J., George, L., Eapen, S. & Rao, P. S. Enhanced plant regeneration in pearl millet (Pennisetum americanum) by ethylene inhibitors and cefotaxime. Plant Cell Tiss. Org. 32, 91-96 (1993).
102. Luo, J. P., Jiang, S. T. & Pan, L. J. Enhanced somatic embryogenesis by salicylic acid of Astragalus adsurgens Pall: relationship with H2O2 production and H2O2-metabolizing enzyme activities. Plant Sci. 161, 125-132 (2001).
103. Sugiyama, M. Organogenesis in vitro. Curr. Opin. Plant Biol. 2, 61-64 (1999).
104. Zhang, Y. F., Zhou, J. H., Wu, T. & Cao, J. S. Shoot regeneration and the relationship between organogenic capacity and endogenous hormonal contents in pumpkin. Plant Cell Tiss. Org. 93, 323-331 (2008).
105. Karami, O. & Saidi, A. The molecular basis for stress-induced acquisition of somatic embryogenesis. Mol. Biol. Rep. 37, 2493-2507 (2010).
106. Jin, F. Y. et al. Comparative transcriptome analysis between somatic embryos (SEs) and zygotic embryos in cotton: evidence for stress response functions in SE development. Plant Biotechnol. J. 12, 161-173 (2014).
107. Kanamori, M., Mizuta, H. & Yasui, H. Effects of ambient calcium concentration on morphological form of callus-like cells in Saccharina japonica (Phaeophyceae) sporophyte. J. Appl. Phycol. 24, 701-706 (2012).
108. Overmyer, K., Brosché, M. & Kangasjärvi, J. Reactive oxygen species and hormonal control of cell death. Trends Plant Sci. 8, 335-342 (2003).
109. Blomster, T. et al. Apoplastic Reactive Oxygen Species Transiently Decrease Auxin Signaling and Cause Stress-Induced Morphogenic Response in Arabidopsis. Plant Physiol. 157, 1866-1883 (2011).
110. Salvo, S. A. G. D., Hirsch, C. N., Buell, C. R., Kaeppler, S. M. & Kaeppler, H. F. Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes. PloS One 9, e111407 (2014).
111. Feher, A., Pasternak, T. P. & Dudits, D. Transition of somatic plant cells to an embryogenic state. Plant Cell Tiss. Org. 74, 201-228 (2003).
112. Cui, K. R., Xing G. S., Liu X. M., Xing G. M. & Wang Y. F. Effect of hydrogen peroxide on somatic embryogenesis of Lycium barbarum L. Plant Sci. 146, 9-16 (1999).
113. Lin, Y. L. & Lai, Z. X. Superoxide dismutase multigene family in longan somatic embryos: a comparison of CuZn-SOD, Fe-SOD, and Mn-SOD gene structure, splicing, phylogeny, and expression. Mol. Breeding 32, 595-615 (2013).
114. Passardi, F., Penel, C. & Dunand, C. Perfoming the paradoxical: how plant peroxidases modify the cell wall. Trends Plant Sci. 9, 534-540 (2004).
115. Coelho, S. M. B., Brownlee, C. & Bothwell, J. H. F. A tip-high, Ca2+-interdependent, reactive oxygen species gradient is associated with polarized growth in Fucus serratus zygotes. Planta 227, 1037-1046 (2008).
116. Kobayashi, M. et al. Calcium-dependent protein kinase regulate the promotion of reactive oxygen species by potato NADPH oxidase. Plant Physiol. 19, 1065-1080 (2007).
117. Monshausen, G. B., Bibikova, T. N., Weisensee,l M. H. & Gilroy, S. Ca2+ regulates reactive oxygen species production and pH during mechanosensing in Arabidopsis roots. Plant Cell 21, 2341-2356 (2009).
118. Joo, J. H. et al. Auxin-induced reactive oxygen species production requires the activation of phosphatidylinositol 3-kinase. FEBS Lett. 579, 1243-1248 (2005).
119. Munnik, T., Irvine, R. F. & Musgrave, A. Phospholipid signaling in plants. Biochim. Biophys. Acta 1389, 222-72 (1998).
120. Berridge, M. J., Bootman, M. D. & Lipp, P. Calcium - A life and death signal. Nature 395, 645-648 (1998).
121. Carafoli, E. Calcium signaling: A tale for all seasons. Proc. Natl. Acad. Sci. USA 99, 1115-1122 (2002).
122. Lin, W. H., Ye, R., Ma, H., Xu, Z. H. & Xue, H. W. DNA chip-based expression profile analysis indicates involvement of the phosphatidylinositol signaling pathway in multiple plant responses to hormone and abiotic treatments. Cell Res. 14, 34-45 (2004).
123. Connett, R. J. A. & Hanke, D. E. Breakdown of phosphatidylinositol in soybean callus. Planta 169, 216-221 (1986).
124. Jain, P. & Rashid, A. Stimulation of shoot regeneration on Linum hypocotyls segments by thidiazuron and its response to light and calcium. Biol. Plantarum 44, 611-613 (2001).
125. Ettlinger, C. & Lehle, L. Auxin induces rapid changes in phosphatidylinositol metabolites. Nature 331, 176-178 (1988).
126. Moubayidin, L., Mambro, R. D. & Sabatini, S. Cytokinin-auxin crosstalk. Trends Plant Sci. 14, 557-562 (2009).