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Volumn 9783642314421, Issue , 2012, Pages 137-145

Maize (Zea Mays) as a model for studying the impact of gene and regulatory sequence loss following whole-genome duplication

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EID: 84949180358     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-642-31442-1_8     Document Type: Chapter
Times cited : (6)

References (34)
  • 1
    • 16344364319 scopus 로고    scopus 로고
    • Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae
    • Bomblies K, Doebley JF (2005) Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae). Mol Biol Evol 22:1082-1094
    • (2005) Mol Biol Evol , vol.22 , pp. 1082-1094
    • Bomblies, K.1    Doebley, J.F.2
  • 2
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers JE et al (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422:433-438
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1
  • 3
    • 85167502746 scopus 로고    scopus 로고
    • Utility of RNA sequencing for analysis of maize reproductive transcriptomes
    • Davidson RM et al (2011) Utility of RNA sequencing for analysis of maize reproductive transcriptomes. Plant Genome 4:191-203
    • (2011) Plant Genome , vol.4 , pp. 191-203
    • Davidson, R.M.1
  • 4
    • 77950931393 scopus 로고    scopus 로고
    • Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation
    • Flagel LE, Wendel JF (2010) Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. New Phytol 186:184-193
    • (2010) New Phytol , vol.186 , pp. 184-193
    • Flagel, L.E.1    Wendel, J.F.2
  • 5
    • 84859890589 scopus 로고    scopus 로고
    • Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants
    • Advance Online Publication
    • Freeling M et al (2012) Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants. Curr Opin Plant Biol, Advance Online Publication.
    • (2012) Curr Opin Plant Biol
    • Freeling, M.1
  • 6
    • 0030959648 scopus 로고    scopus 로고
    • DNA sequence evidence for the segmental allotetraploid origin of maize
    • Gaut BS, Doebley JF (1997) DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci USA 94:6809-6814
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 6809-6814
    • Gaut, B.S.1    Doebley, J.F.2
  • 7
    • 0001502739 scopus 로고
    • Linkage relationships of 19 enzyme Loci in maize
    • GoodmanMMet al (1980) Linkage relationships of 19 enzyme Loci in maize. Genetics 96:697-710
    • (1980) Genetics , vol.96 , pp. 697-710
    • Goodman, M.M.1
  • 8
    • 0001337941 scopus 로고
    • Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms
    • Helentjaris T et al (1988) Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms. Genetics 118:353-363
    • (1988) Genetics , vol.118 , pp. 353-363
    • Helentjaris, T.1
  • 9
    • 73649118150 scopus 로고    scopus 로고
    • Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs
    • Jia Y et al (2009) Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet 5:e1000737
    • (2009) PLoS Genet , vol.5 , pp. e1000737
    • Jia, Y.1
  • 10
    • 78049338441 scopus 로고    scopus 로고
    • Genome-wide patterns of genetic variation among elite maize inbred lines
    • Lai J et al (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet 42:1027-1030
    • (2010) Nat Genet , vol.42 , pp. 1027-1030
    • Lai, J.1
  • 11
    • 78649488563 scopus 로고    scopus 로고
    • The developmental dynamics of the maize leaf transcriptome
    • Li P et al (2010) The developmental dynamics of the maize leaf transcriptome. Nat Genet 42:1060-1067
    • (2010) Nat Genet , vol.42 , pp. 1060-1067
    • Li, P.1
  • 12
    • 57149089296 scopus 로고    scopus 로고
    • Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with Rosids
    • Lyons E et al (2008a) Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with Rosids. Plant Physiol 148:1772-1781
    • (2008) Plant Physiol , vol.148 , pp. 1772-1781
    • Lyons, E.1
  • 13
    • 57749096814 scopus 로고    scopus 로고
    • The value of non-model genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the Rosids
    • Lyons E et al (2008b) The value of non-model genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the Rosids. Trop Plant Biol 1:181-190
    • (2008) Trop Plant Biol , vol.1 , pp. 181-190
    • Lyons, E.1
  • 14
    • 0036241181 scopus 로고    scopus 로고
    • Phylogeny of Andropogoneae inferred from phytochrome B, GBSSI, and ndhF
    • Mathews S et al (2002) Phylogeny of Andropogoneae inferred from phytochrome B, GBSSI, and ndhF. Int J Plant Sci 163:441-450
    • (2002) Int J Plant Sci , vol.163 , pp. 441-450
    • Mathews, S.1
  • 15
    • 77952476959 scopus 로고    scopus 로고
    • Insights from the comparison of plant genome sequences
    • Paterson AH et al (2010) Insights from the comparison of plant genome sequences. Annu Rev Plant Biol 61:349-372
    • (2010) Annu Rev Plant Biol , vol.61 , pp. 349-372
    • Paterson, A.H.1
  • 16
    • 58449137410 scopus 로고    scopus 로고
    • The sorghum bicolor genome and the diversification of grasses
    • Paterson AH et al (2009) The sorghum bicolor genome and the diversification of grasses. Nature 457:551-556
    • (2009) Nature , vol.457 , pp. 551-556
    • Paterson, A.H.1
  • 17
    • 0000340016 scopus 로고
    • Duplicate genes in maize
    • Rhoades MM (1951) Duplicate genes in maize. Am Nat 85:105-110
    • (1951) Am Nat , vol.85 , pp. 105-110
    • Rhoades, M.M.1
  • 18
    • 77952302158 scopus 로고    scopus 로고
    • The collapse of gene complement following whole genome duplication
    • Sankoff D et al (2010) The collapse of gene complement following whole genome duplication. BMC Genomics 11:313
    • (2010) BMC Genomics , vol.11 , pp. 313
    • Sankoff, D.1
  • 19
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • Schnable JC et al (2011) Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc Natl Acad Sci USA 108:4069-4074
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 4069-4074
    • Schnable, J.C.1
  • 20
    • 84863210911 scopus 로고    scopus 로고
    • Genome-wide analysis of syntenic gene deletion in the grasses
    • Schnable JC et al (2012) Genome-wide analysis of syntenic gene deletion in the grasses. Genome Biol Evol 4:265-277
    • (2012) Genome Biol Evol , vol.4 , pp. 265-277
    • Schnable, J.C.1
  • 21
    • 79952495788 scopus 로고    scopus 로고
    • Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize
    • Schnable JC, Freeling M (2011) Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize. PLoS ONE 6:e17855
    • (2011) PLoS ONE , vol.6 , pp. e17855
    • Schnable, J.C.1    Freeling, M.2
  • 22
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable PS et al (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326:1112-1115
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 23
    • 73649121258 scopus 로고    scopus 로고
    • Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
    • Springer NM et al (2009) Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet 5:e1000734
    • (2009) PLoS Genet , vol.5 , pp. e1000734
    • Springer, N.M.1
  • 24
    • 78549273825 scopus 로고    scopus 로고
    • Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
    • Swanson-Wagner RA et al (2010) Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res 20:1689-1699
    • (2010) Genome Res , vol.20 , pp. 1689-1699
    • Swanson-Wagner, R.A.1
  • 25
    • 5144234363 scopus 로고    scopus 로고
    • Close split of sorghum and maize genome progenitors
    • Swigonová Z et al (2004) Close split of sorghum and maize genome progenitors. Genome Res 14:1916-1923
    • (2004) Genome Res , vol.14 , pp. 1916-1923
    • Swigonová, Z.1
  • 26
    • 79955111350 scopus 로고    scopus 로고
    • Screening synteny blocks in pairwise genome comparisons through integer programming
    • Tang H et al (2011) Screening synteny blocks in pairwise genome comparisons through integer programming. BMC Bioinf 12:102
    • (2011) BMC Bioinf , vol.12 , pp. 102
    • Tang, H.1
  • 27
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • The International Brachypodium Initiative
    • The International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463:763-768
    • (2010) Nature , vol.463 , pp. 763-768
  • 28
    • 33745617700 scopus 로고    scopus 로고
    • Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homologue leaving clusters enriched in dose-sensitive genes
    • Thomas BC et al (2006) Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homologue leaving clusters enriched in dose-sensitive genes. Genome Res 16:934-946
    • (2006) Genome Res , vol.16 , pp. 934-946
    • Thomas, B.C.1
  • 29
    • 66149176899 scopus 로고    scopus 로고
    • Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize
    • Wang X et al (2009) Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell 21:1053-1069
    • (2009) Plant Cell , vol.21 , pp. 1053-1069
    • Wang, X.1
  • 30
    • 84863393179 scopus 로고    scopus 로고
    • Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm
    • Waters AJ et al (2011) Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. Plant Cell 23:4221-4233
    • (2011) Plant Cell , vol.23 , pp. 4221-4233
    • Waters, A.J.1
  • 31
    • 85056016479 scopus 로고    scopus 로고
    • Physical and genetic structure of the maize genome reflects its complex evolutionary history
    • Wei F et al (2007) Physical and genetic structure of the maize genome reflects its complex evolutionary history. PLoS Genet 3:e123
    • (2007) PLoS Genet , vol.3 , pp. e123
    • Wei, F.1
  • 32
    • 0001528696 scopus 로고
    • Duplicated chromosome segments in maize (Zea mays L.): Further evidence from hexokinase isozymes
    • Wendel JF et al (1986) Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes. Theoret Appl Genet 72:178-185
    • (1986) Theoret Appl Genet , vol.72 , pp. 178-185
    • Wendel, J.F.1
  • 33
    • 77954741256 scopus 로고    scopus 로고
    • Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs
    • Woodhouse MR et al (2010) Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs. PLoS Biol 8:e1000409
    • (2010) PLoS Biol , vol.8 , pp. e1000409
    • Woodhouse, M.R.1
  • 34
    • 85044703144 scopus 로고    scopus 로고
    • The Genomes of Oryza sativa: A history of duplications
    • Yu J et al (2005) The Genomes of Oryza sativa: a history of duplications. PLoS Biol 3:e38
    • (2005) PLoS Biol , vol.3 , pp. e38
    • Yu, J.1


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