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Volumn 12, Issue 12, 2015, Pages 1191-1196

Continuously tunable nucleic acid hybridization probes

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA; NUCLEIC ACID; NUCLEIC ACID PROBE;

EID: 84949108742     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.3626     Document Type: Article
Times cited : (47)

References (29)
  • 1
    • 77449121614 scopus 로고    scopus 로고
    • Target-enrichment strategies for next-generation sequencing
    • Mamanova, L., et al. Target-enrichment strategies for next-generation sequencing. Nat. Methods 7, 111-118 (2010
    • (2010) Nat. Methods , vol.7 , pp. 111-118
    • Mamanova, L.1
  • 2
    • 0024605518 scopus 로고
    • Analysis of any point mutation in DNA the amplification refractory mutation system (ARMS)
    • Newton, C.R., et al. Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucleic Acids Res. 17, 2503-2516 (1989
    • (1989) Nucleic Acids Res , vol.17 , pp. 2503-2516
    • Newton, C.R.1
  • 3
    • 84874533657 scopus 로고    scopus 로고
    • Combining highly multiplexed PCR with semiconductor-based sequencing for rapid cancer genotyping
    • Beadling, C., et al. Combining highly multiplexed PCR with semiconductor-based sequencing for rapid cancer genotyping. J. Mol. Diagn. 15, 171-176 (2013
    • (2013) J. Mol. Diagn , vol.15 , pp. 171-176
    • Beadling, C.1
  • 4
    • 79951475133 scopus 로고    scopus 로고
    • A decade's perspective on DNA sequencing technology
    • Mardis, E.R. A decade's perspective on DNA sequencing technology. Nature 470, 198-203 (2011
    • (2011) Nature , vol.470 , pp. 198-203
    • Mardis, E.R.1
  • 5
    • 84869457261 scopus 로고    scopus 로고
    • The expanding scope of DNA sequencing
    • Shendure, J., & Aiden, E.L. The expanding scope of DNA sequencing. Nat. Biotechnol. 30, 1084-1094 (2012
    • (2012) Nat. Biotechnol , vol.30 , pp. 1084-1094
    • Shendure, J.1    Aiden, E.L.2
  • 6
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • 1000 Genomes Project Consortium., et al.
    • 1000 Genomes Project Consortium., et al. An integrated map of genetic variation from 1, 092 human genomes. Nature 491, 56-65 (2012
    • (2012) Nature , vol.491 , pp. 56-65
  • 7
    • 84863116178 scopus 로고    scopus 로고
    • Thermodynamic optimization of nucleic acid hybridization specificity
    • Zhang, D.Y., Chen, S.X., & Yin, P. Thermodynamic optimization of nucleic acid hybridization specificity. Nat. Chem. 4, 208-214 (2012
    • (2012) Nat. Chem , vol.4 , pp. 208-214
    • Zhang, D.Y.1    Chen, S.X.2    Yin, P.3
  • 8
    • 84932600780 scopus 로고    scopus 로고
    • Simulation-guided probe design for consistently ultraspecific hybridization
    • Wang, J.S., & Zhang, D.Y. Simulation-guided probe design for consistently ultraspecific hybridization. Nat. Chem. 7, 545-553 (2015
    • (2015) Nat. Chem , vol.7 , pp. 545-553
    • Wang, J.S.1    Zhang, D.Y.2
  • 9
    • 0033033430 scopus 로고    scopus 로고
    • Thermodynamic basis of the enhanced specificity of structured DNA probes
    • Bonnet, G., Tyagi, S., Libchaber, A., & Kramer, F.R. Thermodynamic basis of the enhanced specificity of structured DNA probes. Proc. Natl. Acad. Sci. USA 96, 6171-6176 (1999
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6171-6176
    • Bonnet, G.1    Tyagi, S.2    Libchaber, A.3    Kramer, F.R.4
  • 10
    • 43249095784 scopus 로고    scopus 로고
    • Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations
    • Owczarzy, R., Moreira, B.G., You, Y., Behlke, M.A., & Walder, J.A. Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations. Biochemistry 47, 5336-5353 (2008
    • (2008) Biochemistry , vol.47 , pp. 5336-5353
    • Owczarzy, R.1    Moreira, B.G.2    You, Y.3    Behlke, M.A.4    Walder, J.A.5
  • 11
    • 84865022311 scopus 로고    scopus 로고
    • Primer3-new capabilities and interfaces
    • Untergasser, A., et al. Primer3-new capabilities and interfaces. Nucleic Acids Res. 40, e115 (2012
    • (2012) Nucleic Acids Res , vol.40 , pp. e115
    • Untergasser, A.1
  • 12
    • 78649297854 scopus 로고    scopus 로고
    • Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing
    • Teer, J.K., et al. Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing. Genome Res. 20, 1420-1431 (2010
    • (2010) Genome Res , vol.20 , pp. 1420-1431
    • Teer, J.K.1
  • 13
    • 84925582188 scopus 로고    scopus 로고
    • Anchored multiplex PCR for targeted next-generation sequencing
    • Zheng, Z., et al. Anchored multiplex PCR for targeted next-generation sequencing. Nat. Med. 20, 1479-1484 (2014
    • (2014) Nat. Med , vol.20 , pp. 1479-1484
    • Zheng, Z.1
  • 16
    • 0031462334 scopus 로고    scopus 로고
    • Measuring the thermodynamics of RNA secondary structure formation
    • SantaLucia, J., & Turner, D.H. Measuring the thermodynamics of RNA secondary structure formation. Biopolymers 44, 309-319 (1997
    • (1997) Biopolymers , vol.44 , pp. 309-319
    • SantaLucia, J.1    Turner, D.H.2
  • 17
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415 (2003
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 18
    • 78149355812 scopus 로고    scopus 로고
    • NUPACK: Analysis and design of nucleic acid systems
    • Zadeh, J.N., et al. NUPACK: analysis and design of nucleic acid systems. J. Comput. Chem. 32, 170-173 (2011
    • (2011) J. Comput. Chem , vol.32 , pp. 170-173
    • Zadeh, J.N.1
  • 19
    • 80054757012 scopus 로고    scopus 로고
    • Performance comparison of exome DNA sequencing technologies
    • Clark, M.J., et al. Performance comparison of exome DNA sequencing technologies. Nat. Biotechnol. 29, 908-914 (2011
    • (2011) Nat. Biotechnol , vol.29 , pp. 908-914
    • Clark, M.J.1
  • 20
    • 35348847064 scopus 로고    scopus 로고
    • SNP genotyping: Technologies and biomedical applications
    • Kim, S., & Misra, A. SNP genotyping: technologies and biomedical applications. Annu. Rev. Biomed. Eng. 9, 289-320 (2007
    • (2007) Annu. Rev. Biomed. Eng , vol.9 , pp. 289-320
    • Kim, S.1    Misra, A.2
  • 21
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridization
    • Tyagi, S., & Kramer, F.R. Molecular beacons: probes that fluoresce upon hybridization. Nat. Biotechnol. 14, 303-308 (1996
    • (1996) Nat. Biotechnol , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 22
    • 40449100030 scopus 로고    scopus 로고
    • Direct multiplexed measurement of gene expression with color-coded probe pairs
    • Geiss, G.K., et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat. Biotechnol. 26, 317-325 (2008
    • (2008) Nat. Biotechnol , vol.26 , pp. 317-325
    • Geiss, G.K.1
  • 23
    • 78651330430 scopus 로고    scopus 로고
    • COSMIC: Mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
    • Forbes, S.A., et al. COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res. 39, D945-D950 (2011
    • (2011) Nucleic Acids Res , vol.39 , pp. D945-D950
    • Forbes, S.A.1
  • 24
    • 84857567340 scopus 로고    scopus 로고
    • Nucleic acid hybridization: Robust sequence discrimination
    • Altan-Bonnet, G., & Kramer, F.R. Nucleic acid hybridization: robust sequence discrimination. Nat. Chem. 4, 155-157 (2012
    • (2012) Nat. Chem , vol.4 , pp. 155-157
    • Altan-Bonnet, G.1    Kramer, F.R.2
  • 25
    • 72249110882 scopus 로고    scopus 로고
    • Control of DNA strand displacement kinetics using toehold exchange
    • Zhang, D.Y., & Winfree, E. Control of DNA strand displacement kinetics using toehold exchange. J. Am. Chem. Soc. 131, 17303-17314 (2009
    • (2009) J. Am. Chem. Soc , vol.131 , pp. 17303-17314
    • Zhang, D.Y.1    Winfree, E.2
  • 26
    • 59849113821 scopus 로고    scopus 로고
    • Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
    • Gnirke, A., et al. Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat. Biotechnol. 27, 182-189 (2009
    • (2009) Nat. Biotechnol , vol.27 , pp. 182-189
    • Gnirke, A.1
  • 27
    • 33947116356 scopus 로고    scopus 로고
    • Multifunctional encoded particles for high-throughput biomolecule analysis
    • Pregibon, D.C., Toner, M., & Doyle, P.S. Multifunctional encoded particles for high-throughput biomolecule analysis. Science 315, 1393-1396 (2007
    • (2007) Science , vol.315 , pp. 1393-1396
    • Pregibon, D.C.1    Toner, M.2    Doyle, P.S.3
  • 28
    • 84932633736 scopus 로고    scopus 로고
    • An electrochemical clamp assay for direct, rapid analysis of circulating nucleic acids in serum
    • Das, J., et al. An electrochemical clamp assay for direct, rapid analysis of circulating nucleic acids in serum. Nat. Chem. 7, 569-575 (2015
    • (2015) Nat. Chem , vol.7 , pp. 569-575
    • Das, J.1
  • 29
    • 27544436206 scopus 로고    scopus 로고
    • Label-free detection of peptide nucleic acid-DNA hybridization using localized surface plasmon resonance based optical biosensor
    • Endo, T., Kerman, K., Nagatani, N., Takamura, Y., & Tamiya, E. Label-free detection of peptide nucleic acid-DNA hybridization using localized surface plasmon resonance based optical biosensor. Anal. Chem. 77, 6976-6984 (2005
    • (2005) Anal. Chem , vol.77 , pp. 6976-6984
    • Endo, T.1    Kerman, K.2    Nagatani, N.3    Takamura, Y.4    Tamiya, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.