메뉴 건너뛰기




Volumn 15, Issue , 2015, Pages

Modeling evolution of spatially distributed bacterial communities: A simulation with the haploid evolutionary constructor

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; CHEMOTAXONOMY; ECOLOGICAL MODELING; ENVIRONMENTAL FACTOR; EVOLUTIONARY BIOLOGY; GENETIC STRUCTURE; MICROBIAL COMMUNITY; POPULATION DYNAMICS; SELECTION; SPATIAL DISTRIBUTION; SPECIES DIVERSITY;

EID: 84948992860     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-15-S1-S3     Document Type: Article
Times cited : (8)

References (49)
  • 1
    • 84948971798 scopus 로고    scopus 로고
    • Microbial cycles
    • 1 edition. Academic Press; Jørgensen SE
    • Zavarzin G: Microbial Cycles. In Glob Ecol. 1 edition. Academic Press; Jørgensen SE 2010:183-190.
    • (2010) Glob Ecol , pp. 183-190
    • Zavarzin, G.1
  • 5
    • 84870727772 scopus 로고    scopus 로고
    • Physics of bacterial near-surface motility using flagella and type IV pili: Implications for biofilm formation
    • Conrad JC: Physics of bacterial near-surface motility using flagella and type IV pili: implications for biofilm formation. Res Microbiol 2012, 163:619-29.
    • (2012) Res Microbiol , vol.163 , pp. 619-629
    • Conrad, J.C.1
  • 6
    • 0347994993 scopus 로고    scopus 로고
    • Bacterial biofilms: Prokaryotic adventures in multicellularity
    • Webb JS, Givskov M, Kjelleberg S: Bacterial biofilms: prokaryotic adventures in multicellularity. Curr Opin Microbiol 2003, 6:578-585.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 578-585
    • Webb, J.S.1    Givskov, M.2    Kjelleberg, S.3
  • 8
    • 0001956639 scopus 로고    scopus 로고
    • Inferences from Spatial Population Genetics
    • Chichester: John Wiley & Sons, Ltd;Balding DJ, Bishop M, Cannings C
    • Rousset F: Inferences from Spatial Population Genetics. In Handb Stat Genet Third Ed. Chichester: John Wiley & Sons, Ltd;Balding DJ, Bishop M, Cannings C 2004:.
    • (2004) Handb Stat Genet Third Ed
    • Rousset, F.1
  • 9
    • 0037376204 scopus 로고    scopus 로고
    • Landscape genetics: Combining landscape ecology and population genetics
    • Manel S, Schwartz MK, Luikart G, Taberlet P: Landscape genetics: combining landscape ecology and population genetics. Trends Ecol Evol 2003, 18:189-197.
    • (2003) Trends Ecol Evol , vol.18 , pp. 189-197
    • Manel, S.1    Schwartz, M.K.2    Luikart, G.3    Taberlet, P.4
  • 10
    • 77955759973 scopus 로고    scopus 로고
    • Spatially explicit Bayesian clustering models in population genetics
    • François O, Durand E: Spatially explicit Bayesian clustering models in population genetics. Mol Ecol Resour 2010, 10:773-84.
    • (2010) Mol Ecol Resour , vol.10 , pp. 773-784
    • François, O.1    Durand, E.2
  • 12
    • 4444233112 scopus 로고    scopus 로고
    • Biofilms promote altruism
    • Kreft J-U: Biofilms promote altruism. Microbiology 2004, 150(Pt 8):2751-60.
    • (2004) Microbiology , vol.150 , pp. 2751-2760
    • Kreft, J.-U.1
  • 13
    • 33846485152 scopus 로고    scopus 로고
    • Cooperation and conflict in microbial biofilms
    • Xavier JB, Foster KR: Cooperation and conflict in microbial biofilms. Proc Natl Acad Sci USA 2007, 104:876-81.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 876-881
    • Xavier, J.B.1    Foster, K.R.2
  • 16
    • 0032474853 scopus 로고    scopus 로고
    • Adaptive radiation in a heterogeneous environment
    • Rainey PB, Travisano M: Adaptive radiation in a heterogeneous environment. Nature 1998, 394:69-72.
    • (1998) Nature , vol.394 , pp. 69-72
    • Rainey, P.B.1    Travisano, M.2
  • 17
    • 0042410586 scopus 로고    scopus 로고
    • Evolution of cooperation and conflict in experimental bacterial populations
    • Rainey PB, Rainey K: Evolution of cooperation and conflict in experimental bacterial populations. Nature 2003, 425:72-4.
    • (2003) Nature , vol.425 , pp. 72-74
    • Rainey, P.B.1    Rainey, K.2
  • 18
    • 78649677586 scopus 로고    scopus 로고
    • Environments that induce synthetic microbial ecosystems
    • Klitgord N, Segrè D: Environments that induce synthetic microbial ecosystems. PLoS Comput Biol 2010, 6:e1001002.
    • (2010) PLoS Comput Biol , vol.6
    • Klitgord, N.1    Segrè, D.2
  • 20
    • 84888586768 scopus 로고    scopus 로고
    • The genotypic view of social interactions in microbial communities
    • Mitri S, Foster KR: The genotypic view of social interactions in microbial communities. Annu Rev Genet 2013, 47:247-73.
    • (2013) Annu Rev Genet , vol.47 , pp. 247-273
    • Mitri, S.1    Foster, K.R.2
  • 21
    • 40949151137 scopus 로고    scopus 로고
    • The effect of spatial structure on adaptation in Escherichia coli
    • Perfeito L, Pereira MI, Campos PRA, Gordo I: The effect of spatial structure on adaptation in Escherichia coli. Biol Lett 2008, 4:57-9.
    • (2008) Biol Lett , vol.4 , pp. 57-59
    • Perfeito, L.1    Pereira, M.I.2    Campos, P.R.A.3    Gordo, I.4
  • 22
    • 3343015930 scopus 로고    scopus 로고
    • Evaluating trends in biofilm density using the UMCCA model
    • Laspidou CS, Rittmann BE: Evaluating trends in biofilm density using the UMCCA model. Water Res 2004, 38:3362-72.
    • (2004) Water Res , vol.38 , pp. 3362-3372
    • Laspidou, C.S.1    Rittmann, B.E.2
  • 25
    • 0036350001 scopus 로고    scopus 로고
    • INDISIM, an individual-based discrete simulation model to study bacterial cultures
    • Ginovart M, López D, Valls J: INDISIM, an individual-based discrete simulation model to study bacterial cultures. J Theor Biol 2002, 214:305-19.
    • (2002) J Theor Biol , vol.214 , pp. 305-319
    • Ginovart, M.1    López, D.2    Valls, J.3
  • 26
    • 22744458324 scopus 로고    scopus 로고
    • A framework for multidimensional modelling of activity and structure of multispecies biofilms
    • Xavier JB, Picioreanu C, van Loosdrecht MCM: A framework for multidimensional modelling of activity and structure of multispecies biofilms. Environ Microbiol 2005, 7:1085-103.
    • (2005) Environ Microbiol , vol.7 , pp. 1085-1103
    • Xavier, J.B.1    Picioreanu, C.2    Van Loosdrecht MCM3
  • 27
    • 55349091996 scopus 로고    scopus 로고
    • Individual-based modelling: An essential tool for microbiology
    • Ferrer J, Prats C, López D: Individual-based modelling: an essential tool for microbiology. J Biol Phys 2008, 34:19-37.
    • (2008) J Biol Phys , vol.34 , pp. 19-37
    • Ferrer, J.1    Prats, C.2    López, D.3
  • 28
    • 80051752059 scopus 로고    scopus 로고
    • A Simulation Model of Biofilms with Autonomous Cells, 2 - Explicit Representation of the Extracellular Polymeric Substance
    • Tao Y, Slater GW: A Simulation Model of Biofilms with Autonomous Cells, 2 - Explicit Representation of the Extracellular Polymeric Substance. Macromol Theory Simulations 2011, 20:571-583.
    • (2011) Macromol Theory Simulations , vol.20 , pp. 571-583
    • Tao, Y.1    Slater, G.W.2
  • 29
    • 84864377231 scopus 로고    scopus 로고
    • Modeling microbial dynamics in heterogeneous environments: Growth on soil carbon sources
    • Resat H, Bailey V, McCue LA, Konopka A: Modeling microbial dynamics in heterogeneous environments: growth on soil carbon sources. Microb Ecol 2012, 63:883-97.
    • (2012) Microb Ecol , vol.63 , pp. 883-897
    • Resat, H.1    Bailey, V.2    McCue, L.A.3    Konopka, A.4
  • 30
    • 56349159055 scopus 로고    scopus 로고
    • A bunch of tiny individuals-Individual-based modeling for microbes
    • Hellweger FL, Bucci V: A bunch of tiny individuals-Individual-based modeling for microbes. Ecol Modell 2009, 220:8-22.
    • (2009) Ecol Modell , vol.220 , pp. 8-22
    • Hellweger, F.L.1    Bucci, V.2
  • 31
    • 77953501871 scopus 로고    scopus 로고
    • Scaling laws in bacterial genomes: A side-effect of selection of mutational robustness?
    • Beslon G, Parsons DP, Sanchez-Dehesa Y, Peña J-M, Knibbe C: Scaling laws in bacterial genomes: a side-effect of selection of mutational robustness? Biosystems 2010, 102:32-40.
    • (2010) Biosystems , vol.102 , pp. 32-40
    • Beslon, G.1    Parsons, D.P.2    Sanchez-Dehesa, Y.3    Peña, J.-M.4    Knibbe, C.5
  • 33
    • 0035687225 scopus 로고    scopus 로고
    • Mathematical modelling of quorum sensing in bacteria
    • Ward JP: Mathematical modelling of quorum sensing in bacteria. Math Med Biol 2001, 18:263-292.
    • (2001) Math Med Biol , vol.18 , pp. 263-292
    • Ward, J.P.1
  • 34
    • 84862216405 scopus 로고    scopus 로고
    • Modeling Adaptive Mutation of Enteric Bacteria in Surface Water Using Agent-Based Methods
    • Bucci V, Hoover S, Hellweger FL: Modeling Adaptive Mutation of Enteric Bacteria in Surface Water Using Agent-Based Methods. Water, Air, Soil Pollut 2011, 223:2035-2049.
    • (2011) Water Air Soil Pollut , vol.223 , pp. 2035-2049
    • Bucci, V.1    Hoover, S.2    Hellweger, F.L.3
  • 35
    • 84864594512 scopus 로고    scopus 로고
    • A theoretical reassessment of microbial maintenance and implications for microbial ecology modeling
    • Wang G, Post WM: A theoretical reassessment of microbial maintenance and implications for microbial ecology modeling. FEMS Microbiol Ecol 2012, 81:610-7.
    • (2012) FEMS Microbiol Ecol , vol.81 , pp. 610-617
    • Wang, G.1    Post, W.M.2
  • 36
    • 84866880082 scopus 로고    scopus 로고
    • Haploid evolutionary constructor: New features and further challenges
    • Lashin SA, Matushkin YG: Haploid evolutionary constructor: new features and further challenges. In Silico Biol 2012, 11:125-35.
    • (2012) Silico Biol , vol.11 , pp. 125-135
    • Lashin, S.A.1    Matushkin, Y.G.2
  • 37
    • 38949089993 scopus 로고    scopus 로고
    • Simulation of coevolution in community by using the "evolutionary Constructor" program
    • Lashin SA, Suslov VV, Kolchanov NA, Matushkin YG: Simulation of coevolution in community by using the "Evolutionary Constructor" program. In Silico Biol 2007, 7:261-75.
    • (2007) In Silico Biol , vol.7 , pp. 261-275
    • Lashin, S.A.1    Suslov, V.V.2    Kolchanov, N.A.3    Matushkin, Y.G.4
  • 38
    • 77953664594 scopus 로고    scopus 로고
    • Comparative modeling of coevolution in communities of unicellular organisms: Adaptability and biodiversity
    • Lashin SA, Suslov VV, Matushkin YG: Comparative modeling of coevolution in communities of unicellular organisms: adaptability and biodiversity. J Bioinform Comput Biol 2010, 08:627-643.
    • (2010) J Bioinform Comput Biol , vol.8 , pp. 627-643
    • Lashin, S.A.1    Suslov, V.V.2    Matushkin, Y.G.3
  • 39
    • 0345863934 scopus 로고    scopus 로고
    • The CyberCell Database (CCDB): A comprehensive, selfupdating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
    • Database
    • Sundararaj S, Guo A, Habibi-Nazhad B, Rouani M, Stothard P, Ellison M, Wishart DS: The CyberCell Database (CCDB): a comprehensive, selfupdating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Res 2004, 32 Database: D293-5.
    • (2004) Nucleic Acids Res , vol.32 , pp. D293-D295
    • Sundararaj, S.1    Guo, A.2    Habibi-Nazhad, B.3    Rouani, M.4    Stothard, P.5    Ellison, M.6    Wishart, D.S.7
  • 40
    • 0001119103 scopus 로고
    • Notice sur la loi que population suit dans son accroissement
    • Verhulst JH: Notice sur la loi que population suit dans son accroissement. Corresp mathématique Phys 1838, 10:113-121.
    • (1838) Corresp Mathématique Phys , vol.10 , pp. 113-121
    • Verhulst, J.H.1
  • 41
    • 0002222865 scopus 로고
    • Average excess and average effect of a gene substitution
    • Fisher RA: Average excess and average effect of a gene substitution. Ann Eugen 1941, 11:53-63.
    • (1941) Ann Eugen , vol.11 , pp. 53-63
    • Fisher, R.A.1
  • 42
    • 84966190363 scopus 로고
    • Phenotypic evolution under Fisher's Fundamental Theorem of Natural Selection
    • Charnov EL: Phenotypic evolution under Fisher's Fundamental Theorem of Natural Selection. Heredity (Edinb) 1989, 62:113-116.
    • (1989) Heredity (Edinb) , vol.62 , pp. 113-116
    • Charnov, E.L.1
  • 43
  • 44
    • 0037062936 scopus 로고    scopus 로고
    • Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors
    • Kerr B, Riley MA, Feldman MW, Bohannan BJM: Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 2002, 418:171-4.
    • (2002) Nature , vol.418 , pp. 171-174
    • Kerr, B.1    Riley, M.A.2    Feldman, M.W.3    Bohannan, B.J.M.4
  • 45
    • 74749098075 scopus 로고
    • The Replaceability of Ecological Factors and the Law of the Minimum
    • Rubel E: The Replaceability of Ecological Factors and the Law of the Minimum. Ecology 1935, 16:336.
    • (1935) Ecology , vol.16 , pp. 336
    • Rubel, E.1
  • 46
    • 0003221208 scopus 로고
    • Development and changes of the Cretaceous and Cenozoic faunal assemblages (Tracheata and Chelicerata)
    • Zherikhin VV: Development and changes of the Cretaceous and Cenozoic faunal assemblages (Tracheata and Chelicerata). Tr Paleontol Inst Akad Nauk SSSR 1978, 165:1-200.
    • (1978) Tr Paleontol Inst Akad Nauk SSSR , vol.165 , pp. 1-200
    • Zherikhin, V.V.1
  • 49
    • 33749605422 scopus 로고    scopus 로고
    • Out of the tropics: Evolutionary dynamics of the latitudinal diversity gradient
    • Jablonski D, Roy K, Valentine JW: Out of the tropics: evolutionary dynamics of the latitudinal diversity gradient. Science 2006, 314:102-6.
    • (2006) Science , vol.314 , pp. 102-106
    • Jablonski, D.1    Roy, K.2    Valentine, J.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.