메뉴 건너뛰기




Volumn 362, Issue 13, 2015, Pages

A comparison of faecal microbial populations of South African Windsnyer-type indigenous pigs (SAWIPs) and Large White × Landrace (LW × LR) crosses fed diets containing ensiled maize cobs

Author keywords

Agriculture; Fermentation; Genomics; Intestinal microbiology; Metagenomics

Indexed keywords

AKKERMANSIA; ANIMAL EXPERIMENT; ARTICLE; BACTERIUM; BACTERIUM DETECTION; BACTEROIDES; BREED DIFFERENCE; BUTRIVIBRIO; CLOSTRIDIA; COMPARATIVE STUDY; CONTROLLED STUDY; DESULFOVIBRIO; FAECALIBACTERIUM; HIGH THROUGHPUT SEQUENCING; LANDRACE PIG; MICROBIAL COMMUNITY; NATIVE SPECIES; NONHUMAN; PEPTOCOCCUS; PIG BREED; PRIORITY JOURNAL; SUCCINICLASTICUM; YORKSHIRE PIG; ANIMAL; ANIMAL FOOD; CLASSIFICATION; CLOSTRIDIUM; DIET; DIETARY FIBER; FECES; FERMENTATION; GENETICS; INTESTINE; ISOLATION AND PURIFICATION; MAIZE; METABOLISM; METAGENOMICS; MICROBIAL CONSORTIUM; MICROBIOLOGY; PHYSIOLOGY; PIG; SOUTH AFRICA; STANDARDS; VETERINARY;

EID: 84948967898     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1093/femsle/fnv100     Document Type: Article
Times cited : (12)

References (43)
  • 1
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010;7:335-6.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 2
    • 5444248493 scopus 로고    scopus 로고
    • Akkermansia muciniphila gen nov., sp. nov., a human intestinal mucin-degrading bacterium.
    • Derrien M, Vaughan EE, Plugge CM, et al. Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. Int J Syst Evol Microbiol 2004;54:1469-76.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1469-1476
    • Derrien, M.1    Vaughan, E.E.2    Plugge, C.M.3
  • 3
    • 0025743732 scopus 로고
    • Touchdown PCR to circumvent spurious priming during gene amplification
    • Don RH, Cox PT, Wainwright BJ, et al. Touchdown PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res 1991;19:4008.
    • (1991) Nucleic Acids Res , vol.19 , pp. 4008
    • Don, R.H.1    Cox, P.T.2    Wainwright, B.J.3
  • 4
    • 36849030274 scopus 로고    scopus 로고
    • Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
    • Dunfield PF, Yuryev A, Senin P, et al. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 2007;450:879-82.
    • (2007) Nature , vol.450 , pp. 879-882
    • Dunfield, P.F.1    Yuryev, A.2    Senin, P.3
  • 5
    • 38349102157 scopus 로고    scopus 로고
    • Methane oxidation at 55?C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum
    • Islam T, Jensen S, Reigstad LJ, et al. Methane oxidation at 55?C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum. Proc Natl Acad Sci USA 2008;105: 300-4.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 300-304
    • Islam, T.1    Jensen, S.2    Reigstad, L.J.3
  • 6
    • 84861362934 scopus 로고    scopus 로고
    • The critters within: your gut microflora might be aiding and abetting diabetes
    • Gravitz L. The critters within: your gut microflora might be aiding and abetting diabetes. Nature 2012;485:S12-3.
    • (2012) Nature , vol.485 , pp. S12-S13
    • Gravitz, L.1
  • 7
    • 13544258663 scopus 로고    scopus 로고
    • Comparison of ileum microflora of pigs fed corn-, wheat-, or barley-based diets by chaperonin-60 sequencing and quantitative PCR
    • Hill JE, Hemmingsen SM, Goldade BG, et al. Comparison of ileum microflora of pigs fed corn-, wheat-, or barley-based diets by chaperonin-60 sequencing and quantitative PCR. Appl Environ Microbiol 2005;71:867-75.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 867-875
    • Hill, J.E.1    Hemmingsen, S.M.2    Goldade, B.G.3
  • 8
    • 84863537082 scopus 로고    scopus 로고
    • 454 Pyrosequencing reveals a shift in fecal microbiota of healthy adult men consuming polydextrose or soluble corn fiber
    • Hooda S, Boler BMV, Serao MCR, et al. 454 Pyrosequencing reveals a shift in fecal microbiota of healthy adult men consuming polydextrose or soluble corn fiber. J Nutr 2012;142: 1259-65.
    • (2012) J Nutr , vol.142 , pp. 1259-1265
    • Hooda, S.1    Boler, B.M.V.2    Serao, M.C.R.3
  • 9
    • 0031662188 scopus 로고    scopus 로고
    • Impact of cultureindependent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR. Impact of cultureindependent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 1998;180:4765-74.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 10
    • 0031793221 scopus 로고    scopus 로고
    • Pathway of glucose catabolism by strain VeGlc2, an anaerobe belonging to the Verrucomicrobiales lineage of bacterial decent
    • Janssen PH. Pathway of glucose catabolism by strain VeGlc2, an anaerobe belonging to the Verrucomicrobiales lineage of bacterial decent. Appl Environ Microbiol 1998;64:4830-3.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4830-4833
    • Janssen, P.H.1
  • 11
    • 0029349473 scopus 로고
    • Methane emissions from cattle
    • Johnson KA, Johnson DE. Methane emissions from cattle. J Anim Sci 1995;73:2483-92.
    • (1995) J Anim Sci , vol.73 , pp. 2483-2492
    • Johnson, K.A.1    Johnson, D.E.2
  • 12
    • 84919359383 scopus 로고    scopus 로고
    • Feed preference, nutrient digestibility and colon volatile fatty acid production in growing South African Windsnyer-type indigenous pigs and Large White × Landrace crosses fed diets containing ensiled maize cobs
    • Kanengoni AT, Chimonyo M, Ndimba BK, et al. Feed preference, nutrient digestibility and colon volatile fatty acid production in growing South African Windsnyer-type indigenous pigs and Large White × Landrace crosses fed diets containing ensiled maize cobs. Livestock Sci 2015;171:28-35.
    • (2015) Livestock Sci , vol.171 , pp. 28-35
    • Kanengoni, A.T.1    Chimonyo, M.2    Ndimba, B.K.3
  • 13
    • 84946190421 scopus 로고    scopus 로고
    • Growth performance, blood metabolic responses, and carcass characteristics of grower and finisher South African Windsnyer-type indigenous and Large White × Landrace crossbred pigs fed diets containing ensiled corncobs
    • Kanengoni AT, Chimonyo M, Erlwanger KH, et al. Growth performance, blood metabolic responses, and carcass characteristics of grower and finisher South African Windsnyer-type indigenous and Large White × Landrace crossbred pigs fed diets containing ensiled corncobs. J Anim Sci 2014;92:5739- 48.
    • (2014) J Anim Sci , vol.92 , pp. 5739-5748
    • Kanengoni, A.T.1    Chimonyo, M.2    Erlwanger, K.H.3
  • 14
    • 1242277757 scopus 로고    scopus 로고
    • Growth performance and carcass traits of Large White, Mukota and their F1 crosses fed on graded levels of maize cobs
    • Kanengoni AT, Dzama K, Chimonyo M, et al. Growth performance and carcass traits of Large White, Mukota and their F1 crosses fed on graded levels of maize cobs. Anim Sci 2004;78:61-6.
    • (2004) Anim Sci , vol.78 , pp. 61-66
    • Kanengoni, A.T.1    Dzama, K.2    Chimonyo, M.3
  • 15
    • 79959201412 scopus 로고    scopus 로고
    • Human nutrition, the gut microbiome and the immune system
    • Kau AL, Ahern PP, Griffin NW, et al. Human nutrition, the gut microbiome and the immune system. Nature 2011;474: 327-36.
    • (2011) Nature , vol.474 , pp. 327-336
    • Kau, A.L.1    Ahern, P.P.2    Griffin, N.W.3
  • 16
    • 84863989287 scopus 로고    scopus 로고
    • The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases
    • Khan MT, Duncan SH, Stams AJM, et al. The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases. ISME J 2012;6: 1578-85.
    • (2012) ISME J , vol.6 , pp. 1578-1585
    • Khan, M.T.1    Duncan, S.H.2    Stams, A.J.M.3
  • 17
    • 71549119880 scopus 로고    scopus 로고
    • Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil
    • Kielak A, Rodrigues JLM, Kuramae EE, et al. Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil. FEMS Microbiol Ecol 2010;71: 23-33.
    • (2010) FEMS Microbiol Ecol , vol.71 , pp. 23-33
    • Kielak, A.1    Rodrigues, J.L.M.2    Kuramae, E.E.3
  • 18
    • 84871808499 scopus 로고    scopus 로고
    • Evaluation of general 16S ribosomal RNA gene PCR primers for classical and nextgeneration sequencing-based diversity studies
    • Klindworth A, Pruesse E, Schweer T, et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and nextgeneration sequencing-based diversity studies. Nucleic Acids Res 2013;41:1.
    • (2013) Nucleic Acids Res , vol.41 , pp. 1
    • Klindworth, A.1    Pruesse, E.2    Schweer, T.3
  • 19
    • 61949150134 scopus 로고    scopus 로고
    • Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes
    • Lee K-C, Webb RI, Janssen PH, et al. Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. BMC Microbiol 2009;9:5.
    • (2009) BMC Microbiol , vol.9 , pp. 5
    • Lee, K-C.1    Webb, R.I.2    Janssen, P.H.3
  • 20
    • 79955794476 scopus 로고    scopus 로고
    • Comparative fecal metagenomics unveils unique functional capacity of the swine gut
    • Lamendella R, Santo Domingo JW, Ghosh S, et al. Comparative fecal metagenomics unveils unique functional capacity of the swine gut. BMC Microbiol 2011;11:103.
    • (2011) BMC Microbiol , vol.11 , pp. 103
    • Lamendella, R.1    Santo Domingo, J.W.2    Ghosh, S.3
  • 21
    • 0036154330 scopus 로고    scopus 로고
    • Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited
    • Leser TD, Amenuvor JZ, Jensen TK, et al. Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl Environ Microbiol 2002;68:673-90.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 673-690
    • Leser, T.D.1    Amenuvor, J.Z.2    Jensen, T.K.3
  • 22
    • 33846407246 scopus 로고    scopus 로고
    • The anaerobe Desulfovibrio desulfuricans ATCC 27774 grows at nearly atmospheric oxygen levels
    • Lobo SAL, Melo AMP, Carita JN, et al. The anaerobe Desulfovibrio desulfuricans ATCC 27774 grows at nearly atmospheric oxygen levels. FEBS Lett 2007;581:433-6.
    • (2007) FEBS Lett , vol.581 , pp. 433-436
    • Lobo, S.A.L.1    Melo, A.M.P.2    Carita, J.N.3
  • 23
    • 0027377552 scopus 로고
    • Adaptation to the digestion of non-starch polysaccharide in growing pigs fed on cereal or semi-purified basal diets
    • Longland AC, Low AG, Quelch DB, et al. Adaptation to the digestion of non-starch polysaccharide in growing pigs fed on cereal or semi-purified basal diets. Br J Nutr 1993;70:557-66.
    • (1993) Br J Nutr , vol.70 , pp. 557-566
    • Longland, A.C.1    Low, A.G.2    Quelch, D.B.3
  • 24
    • 84864995364 scopus 로고    scopus 로고
    • Lean breed Landrace pigs harbor fecal methanogens at higher diversity and density than obese breed Erhualian pigs
    • Luo YH, Su Y, Wright ADG, et al. Lean breed Landrace pigs harbor fecal methanogens at higher diversity and density than obese breed Erhualian pigs. Archaea 2012;2012:605289.
    • (2012) Archaea , vol.2012
    • Luo, Y.H.1    Su, Y.2    Wright, A.D.G.3
  • 25
    • 0242657434 scopus 로고    scopus 로고
    • Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches
    • Mackie RI, Aminov RI, Hu W, et al. Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Appl Environ Microbiol 2003;69:6808-15.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6808-6815
    • Mackie, R.I.1    Aminov, R.I.2    Hu, W.3
  • 26
    • 0021962644 scopus 로고
    • Location and characteristics of enzymes involved in the breakdown of polygalacturonic acid by Bacteroides thetaiotaomicron
    • McCarthy RE, Kotarski SF, Salyers AA. Location and characteristics of enzymes involved in the breakdown of polygalacturonic acid by Bacteroides thetaiotaomicron. J Bacteriol 1985;161:493-9.
    • (1985) J Bacteriol , vol.161 , pp. 493-499
    • McCarthy, R.E.1    Kotarski, S.F.2    Salyers, A.A.3
  • 27
    • 84865625352 scopus 로고    scopus 로고
    • Comparative effects of level of dietary fiber and sanitary conditions on the growth and health of weanling pigs
    • Montagne L, le Floc'h N, Arturo-Schaan M, et al. Comparative effects of level of dietary fiber and sanitary conditions on the growth and health of weanling pigs. J Anim Sci 2012;90: 2556-69.
    • (2012) J Anim Sci , vol.90 , pp. 2556-2569
    • Montagne, L.1    le Floc'h, N.2    Arturo-Schaan, M.3
  • 28
    • 0035658747 scopus 로고    scopus 로고
    • Interactions and coupling between emissions of methane and nitrous oxide from animal husbandry
    • Monteny GJ, Groenestein CM, HilhorstMA. Interactions and coupling between emissions of methane and nitrous oxide from animal husbandry. Nutr Cycl Agroecosyst 2001;60:123-32.
    • (2001) Nutr Cycl Agroecosyst , vol.60 , pp. 123-132
    • Monteny, G.J.1    Groenestein, C.M.2    Hilhorst, M.A.3
  • 29
    • 31944447236 scopus 로고    scopus 로고
    • Effect of feeding level, live weight and genotype on the apparent faecal digestibility of energy and organic matter in the growing pig
    • Morel PCH, Lee TS, Moughan PJ. Effect of feeding level, live weight and genotype on the apparent faecal digestibility of energy and organic matter in the growing pig. Anim Feed Sci Technol 2006;126:63-74.
    • (2006) Anim Feed Sci Technol , vol.126 , pp. 63-74
    • Morel, P.C.H.1    Lee, T.S.2    Moughan, P.J.3
  • 30
    • 0003498646 scopus 로고    scopus 로고
    • 10th ed. Washington, DC: National Academy Press
    • NRC. Nutrient Requirements of Swine, 10th ed. Washington, DC: National Academy Press, 1998.
    • (1998) Nutrient Requirements of Swine
  • 31
    • 75349100425 scopus 로고    scopus 로고
    • The role and potential of probiotic bacteria in the gut, and the communication between gut microflora and gut/host
    • O'Flaherty S, Klaenhammer TR. The role and potential of probiotic bacteria in the gut, and the communication between gut microflora and gut/host. Int Dairy J 2010;20:262-8.
    • (2010) Int Dairy J , vol.20 , pp. 262-268
    • O'Flaherty, S.1    Klaenhammer, T.R.2
  • 32
    • 84923005663 scopus 로고    scopus 로고
    • Characterization of the fecal microbial communities of Duroc pigs using 16S rRNA gene pyrosequencing
    • Pajarillo EAB, Chae J-P, Balolong MP, et al. Characterization of the fecal microbial communities of Duroc pigs using 16S rRNA gene pyrosequencing. Asian Australas J Anim Sci 2015;4: 584-91.
    • (2015) Asian Australas J Anim Sci , vol.4 , pp. 584-591
    • Pajarillo, E.A.B.1    Chae, J.-P.2    Balolong, M.P.3
  • 33
    • 84905701221 scopus 로고    scopus 로고
    • Pyrosequencing-based analysis of fecal microbial communities in three purebred pig lines
    • Pajarillo EAB, Chae J-P, BalolongMP, et al. Pyrosequencing-based analysis of fecal microbial communities in three purebred pig lines. J Microbiol 2014;52:646-51.
    • (2014) J Microbiol , vol.52 , pp. 646-651
    • Pajarillo, E.A.B.1    Chae, J.-P.2    Balolong, M.P.3
  • 34
    • 78149283854 scopus 로고    scopus 로고
    • Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria
    • Png CW, Linden SK, Gilshenan KS, et al. Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria. Am J Gastroenterol 2010;105:2420-8.
    • (2010) Am J Gastroenterol , vol.105 , pp. 2420-2428
    • Png, C.W.1    Linden, S.K.2    Gilshenan, K.S.3
  • 35
    • 84893161822 scopus 로고    scopus 로고
    • Early methanogenic colonisation in the faeces of Meishan and Yorkshire piglets as determined by pyrosequencing analysis
    • Su Y, Bian G, Zhu Z, et al. Early methanogenic colonisation in the faeces of Meishan and Yorkshire piglets as determined by pyrosequencing analysis. Archaea 2014;2014: 547908.
    • (2014) Archaea , vol.2014
    • Su, Y.1    Bian, G.2    Zhu, Z.3
  • 36
    • 78651254481 scopus 로고    scopus 로고
    • Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum/necrophorum
    • Swidsinski A, Dorffel Y, Loening-Baucke V, et al. Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum/necrophorum. Gut 2011;60: 34-40.
    • (2011) Gut , vol.60 , pp. 34-40
    • Swidsinski, A.1    Dorffel, Y.2    Loening-Baucke, V.3
  • 37
    • 84885141191 scopus 로고    scopus 로고
    • The effect of dietary supplementation with spent cider yeast on the swine distal gut microbiome
    • Upadrasta A, O'Sullivan L, O'Sullivan O, et al. The effect of dietary supplementation with spent cider yeast on the swine distal gut microbiome. PLoS One 2013;8:e75714.
    • (2013) PLoS One , vol.8
    • Upadrasta, A.1    O'Sullivan, L.2    O'Sullivan, O.3
  • 38
    • 84857256772 scopus 로고    scopus 로고
    • Comparative digestibility of energy and nutrients in fibrous feed ingredients fed to Meishan and Yorkshire pigs
    • Urriola PE, Stein HH. Comparative digestibility of energy and nutrients in fibrous feed ingredients fed to Meishan and Yorkshire pigs. J Anim Sci 2012;90:802-12.
    • (2012) J Anim Sci , vol.90 , pp. 802-812
    • Urriola, P.E.1    Stein, H.H.2
  • 39
    • 0028902897 scopus 로고
    • Succiniclasticum ruminis gen Nov., sp. Nov., a ruminal bacterium converting succinate to propionate as the sole energy-yielding mechanism.
    • Van Gylswyk NO. Succiniclasticum ruminis gen. Nov., sp. Nov., a ruminal bacterium converting succinate to propionate as the sole energy-yielding mechanism. Int J Syst Bacteriol 1995;45:297-300.
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 297-300
    • Van Gylswyk, N.O.1
  • 41
    • 0023969196 scopus 로고
    • Effects of dietary fiber of young adult genetically lean, obese and contemporary pigs: rate of passage, digestibility and microbiological data
    • Varel VH, Jung HG, Pond WG. Effects of dietary fiber of young adult genetically lean, obese and contemporary pigs: rate of passage, digestibility and microbiological data. J Anim Sci 1988;66:707-12.
    • (1988) J Anim Sci , vol.66 , pp. 707-712
    • Varel, V.H.1    Jung, H.G.2    Pond, W.G.3
  • 42
    • 0021984051 scopus 로고
    • Enumeration and activity of cellulolytic bacteria from gestating swine fed various levels of dietary fiber
    • Varel VH, Pond WG. Enumeration and activity of cellulolytic bacteria from gestating swine fed various levels of dietary fiber. Appl Environ Microbiol 1985;49:858-62.
    • (1985) Appl Environ Microbiol , vol.49 , pp. 858-862
    • Varel, V.H.1    Pond, W.G.2
  • 43
    • 77955067191 scopus 로고    scopus 로고
    • Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
    • Wu GD, Lewis JD, Hoffmann C, et al. Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiol. 2010;10:206.
    • (2010) BMC Microbiol. , vol.10 , pp. 206
    • Wu, G.D.1    Lewis, J.D.2    Hoffmann, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.