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Volumn 2014, Issue , 2014, Pages

Early methanogenic colonisation in the faeces of Meishan and Yorkshire piglets as determined by pyrosequencing analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL DNA; METHANE; RIBOSOME DNA; RNA 16S;

EID: 84893161822     PISSN: 14723646     EISSN: None     Source Type: Journal    
DOI: 10.1155/2014/547908     Document Type: Article
Times cited : (37)

References (44)
  • 1
    • 0029769377 scopus 로고    scopus 로고
    • Fecal methanogens and vertebrate evolution
    • 2-s2.0-0029769377
    • Hackstein J. H. P., van Alen T. A., Fecal methanogens and vertebrate evolution. Evolution 1996 50 2 559 572 2-s2.0-0029769377
    • (1996) Evolution , vol.50 , Issue.2 , pp. 559-572
    • Hackstein, J.H.P.1    Van Alen, T.A.2
  • 2
    • 0029670915 scopus 로고    scopus 로고
    • 2-utilizing acetogenic and sulfate-reducing bacteria and methanogenic Archaea from digestive tract of different mammals
    • 2-s2.0-0029670915
    • 2-utilizing acetogenic and sulfate-reducing bacteria and methanogenic Archaea from digestive tract of different mammals. Current Microbiology 1996 32 3 129 133 2-s2.0-0029670915
    • (1996) Current Microbiology , vol.32 , Issue.3 , pp. 129-133
    • Morvan, B.1    Bonnemoy, F.2    Fonty, G.3    Gouet, P.4
  • 3
    • 0031923090 scopus 로고    scopus 로고
    • Phylogenetic analysis of Methanobrevibacter isolated from feces of humans and other animals
    • DOI 10.1007/s002030050589
    • Lin C., Miller T. L., Phylogenetic analysis of Methanobrevibacter isolated from feces of humans and other animals. Archives of Microbiology 1998 169 5 397 403 2-s2.0-0031923090 10.1007/s002030050589 (Pubitemid 28204281)
    • (1998) Archives of Microbiology , vol.169 , Issue.5 , pp. 397-403
    • Lin, C.1    Miller, T.L.2
  • 4
    • 0029349473 scopus 로고
    • Methane emissions from cattle
    • 2-s2.0-0029349473
    • Johnson K. A., Johnson D. E., Methane emissions from cattle. Journal of Animal Science 1995 73 8 2483 2492 2-s2.0-0029349473
    • (1995) Journal of Animal Science , vol.73 , Issue.8 , pp. 2483-2492
    • Johnson, K.A.1    Johnson, D.E.2
  • 7
    • 79954423226 scopus 로고    scopus 로고
    • Phylogenetic analysis of methanogens in the pig feces
    • 2-s2.0-79954423226 10.1007/s00284-011-9873-9
    • Mao S.-Y., Yang C.-F., Zhu W.-Y., Phylogenetic analysis of methanogens in the pig feces. Current Microbiology 2011 62 5 1386 1389 2-s2.0-79954423226 10.1007/s00284-011-9873-9
    • (2011) Current Microbiology , vol.62 , Issue.5 , pp. 1386-1389
    • Mao, S.-Y.1    Yang, C.-F.2    Zhu, W.-Y.3
  • 8
    • 84864995364 scopus 로고    scopus 로고
    • Lean breed Landrace pigs harbor fecal methanogens at higher diversity and density than obese breed Erhualian pigs
    • 10.1155/2012/605289 605289
    • Luo Y. H., Su Y., Wright A. D. G., Zhang L. L., Smidt H., Zhu W. Y., Lean breed Landrace pigs harbor fecal methanogens at higher diversity and density than obese breed Erhualian pigs. Archaea 2012 2012 9 10.1155/2012/605289 605289
    • (2012) Archaea , vol.2012 , pp. 9
    • Luo, Y.H.1    Su, Y.2    Wright, A.D.G.3    Zhang, L.L.4    Smidt, H.5    Zhu, W.Y.6
  • 9
    • 85046982618 scopus 로고    scopus 로고
    • Microbial ecology and host-microbiota interactions during early life stages
    • Collado M. C., Cernada M., Bauerl C., Vento M., Perez-Martinez G., Microbial ecology and host-microbiota interactions during early life stages. Gut Microbes 2012 3 352 365
    • (2012) Gut Microbes , vol.3 , pp. 352-365
    • Collado, M.C.1    Cernada, M.2    Bauerl, C.3    Vento, M.4    Perez-Martinez, G.5
  • 11
    • 84867964564 scopus 로고    scopus 로고
    • Early development of intestinal microbiota: Implications for future health
    • Saavedra J. M., Dattilo A. M., Early development of intestinal microbiota: implications for future health. Gastroenterology Clinic of North America 2012 41 717 731
    • (2012) Gastroenterology Clinic of North America , vol.41 , pp. 717-731
    • Saavedra, J.M.1    Dattilo, A.M.2
  • 14
    • 34547129847 scopus 로고    scopus 로고
    • Development of the human infant intestinal microbiota
    • DOI 10.1371/journal.pbio.0050177
    • Palmer C., Bik E. M., DiGiulio D. B., Relman D. A., Brown P. O., Development of the human infant intestinal microbiota. PLoS Biology 2007 5 7, article e177 2-s2.0-34547624404 10.1371/journal.pbio.0050177 (Pubitemid 47105346)
    • (2007) PLoS Biology , vol.5 , Issue.7 , pp. 1556-1573
    • Palmer, C.1    Bik, E.M.2    DiGiulio, D.B.3    Relman, D.A.4    Brown, P.O.5
  • 16
    • 46749145764 scopus 로고    scopus 로고
    • The immediate environment during postnatal development has long-term impact on gut community structure in pigs
    • DOI 10.1038/ismej.2008.29, PII ISMEJ200829
    • Thompson C. L., Wang B., Holmes A. J., The immediate environment during postnatal development has long-term impact on gut community structure in pigs. ISME Journal 2008 2 7 739 748 2-s2.0-46749145764 10.1038/ismej.2008.29 (Pubitemid 351951564)
    • (2008) ISME Journal , vol.2 , Issue.7 , pp. 739-748
    • Thompson, C.L.1    Wang, B.2    Holmes, A.J.3
  • 17
    • 68049116870 scopus 로고    scopus 로고
    • The long-term health effects of neonatal microbial flora
    • 2-s2.0-68049116870 10.1097/ACI.0b013e32832b3f1d
    • Conroy M. E., Shi H. N., Walker W. A., The long-term health effects of neonatal microbial flora. Current Opinion in Allergy and Clinical Immunology 2009 9 3 197 201 2-s2.0-68049116870 10.1097/ACI.0b013e32832b3f1d
    • (2009) Current Opinion in Allergy and Clinical Immunology , vol.9 , Issue.3 , pp. 197-201
    • Conroy, M.E.1    Shi, H.N.2    Walker, W.A.3
  • 18
    • 50849127827 scopus 로고    scopus 로고
    • Real-time PCR quantification of the predominant bacterial divisions in the distal gut of Meishan and Landrace pigs
    • 2-s2.0-50849127827 10.1016/j.anaerobe.2008.04.001
    • Guo X., Xia X., Tang R., Wang K., Real-time PCR quantification of the predominant bacterial divisions in the distal gut of Meishan and Landrace pigs. Anaerobe 2008 14 4 224 228 2-s2.0-50849127827 10.1016/j.anaerobe.2008.04.001
    • (2008) Anaerobe , vol.14 , Issue.4 , pp. 224-228
    • Guo, X.1    Xia, X.2    Tang, R.3    Wang, K.4
  • 19
    • 0035984122 scopus 로고    scopus 로고
    • Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern
    • DOI 10.1046/j.1462-2920.2002.00297.x
    • Casamayor E. O., Massana R., Benlloch S., Øvreås L., Díez B., Goddard V. J., Gasol J. M., Joint I., Rodríguez-Valera F., Pedrós-Alió C., Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environmental Microbiology 2002 4 6 338 348 2-s2.0-0035984122 10.1046/j.1462-2920.2002.00297.x (Pubitemid 34788806)
    • (2002) Environmental Microbiology , vol.4 , Issue.6 , pp. 338-348
    • Casamayor, E.O.1    Massana, R.2    Benlloch, S.3    Ovreas, L.4    Diez, B.5    Goddard, V.J.6    Gasol, J.M.7    Joint, I.8    Rodriguez-Valera, F.9    Pedros-Alio, C.10
  • 20
    • 4444222910 scopus 로고    scopus 로고
    • Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: Response of methanogens and methanotrophs to environmental change
    • DOI 10.1016/j.orggeochem.2004.06.009, PII S0146638004001573
    • Coolen M. J. L., Hopmans E. C., Rijpstra W. I. C., Muyzer G., Schouten S., Volkman J. K., Sinninghe Damsté J. S., Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: response of methanogens and methanotrophs to environmental change. Organic Geochemistry 2004 35 10 1151 1167 2-s2.0-4444222910 10.1016/j.orggeochem.2004.06.009 (Pubitemid 39204619)
    • (2004) Organic Geochemistry , vol.35 , Issue.10 , pp. 1151-1167
    • Coolen, M.J.L.1    Hopmans, E.C.2    Rijpstra, W.I.C.3    Muyzer, G.4    Schouten, S.5    Volkman, J.K.6    Sinninghe Damste, J.S.7
  • 21
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E., Goebel B. M., Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Bacteriology 1994 44 4 846 849 2-s2.0-0028028182 (Pubitemid 24315169)
    • (1994) International Journal of Systematic Bacteriology , vol.44 , Issue.4 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 22
    • 80052606131 scopus 로고    scopus 로고
    • WebMGA: A customizable web server for fast metagenomic sequence analysis
    • 2-s2.0-80052606131 10.1186/1471-2164-12-444
    • Wu S., Zhu Z., Fu L., Niu B., Li W., WebMGA: a customizable web server for fast metagenomic sequence analysis. BMC Genomics 2011 12, article 444 2-s2.0-80052606131 10.1186/1471-2164-12-444
    • (2011) BMC Genomics , vol.12
    • Wu, S.1    Zhu, Z.2    Fu, L.3    Niu, B.4    Li, W.5
  • 23
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good J., The population frequencies of species and the estimation of population parameters. Biometrika 1953 40 237 264
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, J.1
  • 25
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • DOI 10.1128/AEM.71.12.8228-8235.2005
    • Lozupone C., Knight R., UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 2005 71 12 8228 8235 2-s2.0-29144464937 10.1128/AEM.71.12.8228-8235.2005 (Pubitemid 41803949)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.12 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J. D., Higgins D. G., Gibson T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994 22 22 4673 4680 2-s2.0-0027968068 (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • 2-s2.0-0023375195
    • Saitou N., Nei M., The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 1987 4 4 406 425 2-s2.0-0023375195
    • (1987) Molecular Biology and Evolution , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 28
    • 0033766069 scopus 로고    scopus 로고
    • Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes
    • 2-s2.0-0033766069 10.1128/AEM.66.11.5066-5072.2000
    • Takai K., Horikoshi K., Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Applied and Environmental Microbiology 2000 66 11 5066 5072 2-s2.0-0033766069 10.1128/AEM.66.11.5066-5072.2000
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.11 , pp. 5066-5072
    • Takai, K.1    Horikoshi, K.2
  • 30
    • 33745610880 scopus 로고    scopus 로고
    • A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism
    • DOI 10.1073/pnas.0602187103
    • Samuel B. S., Gordon J. I., A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proceedings of the National Academy of Sciences of the United States of America 2006 103 26 10011 10016 2-s2.0-33745610880 10.1073/pnas.0602187103 (Pubitemid 43993614)
    • (2006) Proceedings of the National Academy of Sciences of the United States of America , vol.103 , Issue.26 , pp. 10011-10016
    • Samuel, B.S.1    Gordon, J.I.2
  • 31
    • 35948938623 scopus 로고    scopus 로고
    • Quantitation and diversity analysis of ruminal methanogenic populations in response to the antimethanogenic compound bromochloromethane
    • DOI 10.1111/j.1574-6941.2007.00394.x
    • Denman S. E., Tomkins N. W., McSweeney C. S., Quantitation and diversity analysis of ruminal methanogenic populations in response to the antimethanogenic compound bromochloromethane. FEMS Microbiology Ecology 2007 62 3 313 322 2-s2.0-35948938623 10.1111/j.1574-6941.2007.00394.x (Pubitemid 350076062)
    • (2007) FEMS Microbiology Ecology , vol.62 , Issue.3 , pp. 313-322
    • Denman, S.E.1    Tomkins, N.W.2    McSweeney, C.S.3
  • 32
    • 34447511716 scopus 로고    scopus 로고
    • Molecular diversity of methanogens in feedlot cattle from Ontario and Prince Edward Island, Canada
    • DOI 10.1128/AEM.00103-07
    • Wright A.-D. G., Auckland C. H., Lynn D. H., Molecular diversity of methanogens in feedlot cattle from Ontario and Prince Edward Island, Canada. Applied and Environmental Microbiology 2007 73 13 4206 4210 2-s2.0-34447511716 10.1128/AEM.00103-07 (Pubitemid 47068159)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.13 , pp. 4206-4210
    • Wright, A.-D.G.1    Auckland, C.H.2    Lynn, D.H.3
  • 33
    • 70349408423 scopus 로고    scopus 로고
    • High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol
    • 2-s2.0-70349408423 10.1371/journal.pone.0007063 e7063
    • Dridi B., Henry M., El Khéchine A., Raoult D., Drancourt M., High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol. PLoS ONE 2009 4 9 2-s2.0-70349408423 10.1371/journal.pone.0007063 e7063
    • (2009) PLoS ONE , vol.4 , Issue.9
    • Dridi, B.1    Henry, M.2    El Khéchine, A.3    Raoult, D.4    Drancourt, M.5
  • 34
    • 70349631208 scopus 로고    scopus 로고
    • Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients
    • 2-s2.0-70349631208 10.1371/journal.pone.0007125 e7125
    • Armougom F., Henry M., Vialettes B., Raccah D., Raoult D., Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients. PLoS ONE 2009 4 9 2-s2.0-70349631208 10.1371/journal.pone.0007125 e7125
    • (2009) PLoS ONE , vol.4 , Issue.9
    • Armougom, F.1    Henry, M.2    Vialettes, B.3    Raccah, D.4    Raoult, D.5
  • 35
    • 84862230115 scopus 로고    scopus 로고
    • Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii
    • 2-s2.0-79961115325 10.1038/ijo.2011.153
    • Million M., Maraninchi M., Henry M., Armougom F., Richet H., Carrieri P., Valero R., Raccah D., Vialettes B., Raoult D., Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii. International Journal of Obesity 2012 36 817 825 2-s2.0-79961115325 10.1038/ijo.2011.153
    • (2012) International Journal of Obesity , vol.36 , pp. 817-825
    • Million, M.1    Maraninchi, M.2    Henry, M.3    Armougom, F.4    Richet, H.5    Carrieri, P.6    Valero, R.7    Raccah, D.8    Vialettes, B.9    Raoult, D.10
  • 36
    • 0035037452 scopus 로고    scopus 로고
    • Time course of spontaneous bacterial translocation from gastrointestinal tract and its relationship to intestinal microflora in conventionally reared infant rats
    • DOI 10.1023/A:1010734717218
    • Wenzl H. H., Schimpl G., Feierl G., Steinwender G., Time course of spontaneous bacterial translocation from gastrointestinal tract and its relationship to intestinal microflora in conventionally reared infant rats. Digestive Diseases and Sciences 2001 46 5 1120 1126 2-s2.0-0035037452 10.1023/A:1010734717218 (Pubitemid 32375046)
    • (2001) Digestive Diseases and Sciences , vol.46 , Issue.5 , pp. 1120-1126
    • Wenzl, H.H.1    Schimpl, G.2    Feierl, G.3    Steinwender, G.4
  • 38
    • 0141868955 scopus 로고    scopus 로고
    • Development of bacterial and bifidobacterial communities in feces of newborn babies
    • DOI 10.1016/j.anaerobe.2003.07.001
    • Favier C. F., de Vos W. M., Akkermans A. D. L., Development of bacterial and bifidobacterial communities in feces of newborn babies. Anaerobe 2003 9 5 219 229 2-s2.0-0141868955 10.1016/j.anaerobe.2003.07.001 (Pubitemid 37188669)
    • (2003) Anaerobe , vol.9 , Issue.5 , pp. 219-229
    • Favier, C.F.1    De Vos, W.M.2    Akkermans, A.D.L.3
  • 39
    • 77957979642 scopus 로고    scopus 로고
    • Comparative metagenomics and population dynamics of the gut microbiota in mother and infant
    • 2-s2.0-77957979642 10.1093/gbe/evp057
    • Vaishampayan P. A., Kuehl J. V., Froula J. L., Morgan J. L., Ochman H., Francino M. P., Comparative metagenomics and population dynamics of the gut microbiota in mother and infant. Genome Biology and Evolution 2010 2 1 53 66 2-s2.0-77957979642 10.1093/gbe/evp057
    • (2010) Genome Biology and Evolution , vol.2 , Issue.1 , pp. 53-66
    • Vaishampayan, P.A.1    Kuehl, J.V.2    Froula, J.L.3    Morgan, J.L.4    Ochman, H.5    Francino, M.P.6
  • 41
    • 0035989469 scopus 로고    scopus 로고
    • Description of Methanobrevibacter gottschalkii sp nov, Methanobrevibacter thaueri sp nov, Methanobrevibacter woesei sp nov and Methanobrevibacter wolinii sp nov
    • DOI 10.1099/ijs.0.02022-0
    • Miller T. L., Lin C., Description of Methanobrevibacter gottschalkii sp. nov., Methanobrevibacter thaueri sp. nov., Methanobrevibacter woesei sp. nov. and Methanobrevibacter wolinii sp. nov. International Journal of Systematic and Evolutionary Microbiology 2002 52 3 819 822 2-s2.0-0035989469 10.1099/ijs.0.02022-0 (Pubitemid 34591207)
    • (2002) International Journal of Systematic and Evolutionary Microbiology , vol.52 , Issue.3 , pp. 819-822
    • Miller, T.L.1    Lin, C.2
  • 43
    • 80054026277 scopus 로고    scopus 로고
    • Influence of mother's intestinal microbiota on gut colonization in the infant
    • 2-s2.0-80054026277
    • Grönlund M.-M., Grzeskowiak Ł., Isolauri E., Salminen S., Influence of mother's intestinal microbiota on gut colonization in the infant. Gut Microbes 2011 2 4 227 233 2-s2.0-80054026277
    • (2011) Gut Microbes , vol.2 , Issue.4 , pp. 227-233
    • Grönlund, M.-M.1    Grzeskowiak, Ł.2    Isolauri, E.3    Salminen, S.4
  • 44
    • 84893200623 scopus 로고    scopus 로고
    • Dynamic analyses of lactose and milk protein in Erhualian Sows and their comparisons with Yorkshire sows
    • Qin Y., Zou S., Xu Y., Wang P., Xu X., Dynamic analyses of lactose and milk protein in Erhualian Sows and their comparisons with Yorkshire sows Journal of Anhui Agricultural University 2000 27 167 170
    • (2000) Journal of Anhui Agricultural University , vol.27 , pp. 167-170
    • Qin, Y.1    Zou, S.2    Xu, Y.3    Wang, P.4    Xu, X.5


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