메뉴 건너뛰기




Volumn 173, Issue , 2016, Pages 346-354

A novel features ranking metric with application to scalable visual and bioinformatics data classification

Author keywords

Dimensionality reduction; Feature ranking; Image classification; Protein protein interaction

Indexed keywords

BIG DATA; BIOINFORMATICS; COMPUTER AIDED DIAGNOSIS; IMAGE CLASSIFICATION; INFORMATION FILTERING; PROTEINS;

EID: 84948719605     PISSN: 09252312     EISSN: 18728286     Source Type: Journal    
DOI: 10.1016/j.neucom.2014.12.123     Document Type: Article
Times cited : (385)

References (47)
  • 2
    • 33745561205 scopus 로고    scopus 로고
    • An introduction to variable and feature selection
    • Guyon I., Elisseeff A. An introduction to variable and feature selection. J. Mach. Learn. Res. 2003, 3:1157-1182.
    • (2003) J. Mach. Learn. Res. , vol.3 , pp. 1157-1182
    • Guyon, I.1    Elisseeff, A.2
  • 3
    • 35748932917 scopus 로고    scopus 로고
    • A review of feature selection techniques in bioinformatics
    • Saeys Y. A review of feature selection techniques in bioinformatics. Bioinformatics 2007, 23(19):2507-2517.
    • (2007) Bioinformatics , vol.23 , Issue.19 , pp. 2507-2517
    • Saeys, Y.1
  • 4
    • 84870391329 scopus 로고    scopus 로고
    • Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions
    • Ding C., Yuan L.F., Guo S.H., Lin H., Chen W. Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions. J. Proteom. 2007, 77:321-328.
    • (2007) J. Proteom. , vol.77 , pp. 321-328
    • Ding, C.1    Yuan, L.F.2    Guo, S.H.3    Lin, H.4    Chen, W.5
  • 5
    • 84876241526 scopus 로고    scopus 로고
    • Predicting subchloroplast locations of proteins based on the general form of Chou's pseudo amino acid composition: approached from optimal tripeptide composition
    • H. Lin, C. Ding, L.F. Yuan, W. Chen, H. Ding, Z.Q. Li, F.B. Guo, J. Huang, N.N. Rao, Predicting subchloroplast locations of proteins based on the general form of Chou's pseudo amino acid composition: approached from optimal tripeptide composition, Int. J. Biomath. 6 (2) (2013), 1350003.
    • (2013) Int. J. Biomath. , vol.6 , Issue.2
    • Lin, H.1    Ding, C.2    Yuan, L.F.3    Chen, W.4    Ding, H.5    Li, Z.Q.6    Guo, F.B.7    Huang, J.8    Rao, N.N.9
  • 6
    • 84885112194 scopus 로고    scopus 로고
    • AcalPred. a sequence-based tool for discriminating between acidic and alkaline enzymes
    • Lin H., Chen W., Ding H. AcalPred. a sequence-based tool for discriminating between acidic and alkaline enzymes. PloS One 2013, 8(10):e75726.
    • (2013) PloS One , vol.8 , Issue.10
    • Lin, H.1    Chen, W.2    Ding, H.3
  • 7
    • 79959196463 scopus 로고    scopus 로고
    • Methods of forward feature selection based on the aggregation of classifiers generated by single attribute
    • Kai Luo Lin, Jun Ye Lin, Xiang Luo Mei, Feng Huang Deng, Hong Peng, Fan Yang Methods of forward feature selection based on the aggregation of classifiers generated by single attribute. Comput. Biol. Med. 2011, 41(7):435-441.
    • (2011) Comput. Biol. Med. , vol.41 , Issue.7 , pp. 435-441
    • Kai, L.L.1    Jun, Y.L.2    Xiang, L.M.3    Feng, H.D.4    Hong, P.5    Fan, Y.6
  • 8
    • 77955512184 scopus 로고    scopus 로고
    • Neural-network-based adaptive leader-following control for multi-agent systems with uncertainties
    • Cheng L., Hou Z.-G., Tan M., Lin Y., Zhang W.J. Neural-network-based adaptive leader-following control for multi-agent systems with uncertainties. IEEE Trans. Neural Netw. 2010, 21(8):1351-1358.
    • (2010) IEEE Trans. Neural Netw. , vol.21 , Issue.8 , pp. 1351-1358
    • Cheng, L.1    Hou, Z.-G.2    Tan, M.3    Lin, Y.4    Zhang, W.J.5
  • 9
    • 77954761552 scopus 로고    scopus 로고
    • Multi-criteria optimization for coordination of redundant robots using a dual neural network
    • Hou Z.-G., Cheng L., Tan M. Multi-criteria optimization for coordination of redundant robots using a dual neural network. IEEE Trans. Syst. Man Cybern. Part B: Cybern. 2010, 40(4):1075-1087.
    • (2010) IEEE Trans. Syst. Man Cybern. Part B: Cybern. , vol.40 , Issue.4 , pp. 1075-1087
    • Hou, Z.-G.1    Cheng, L.2    Tan, M.3
  • 10
    • 50549089953 scopus 로고    scopus 로고
    • A neutral-type delayed projection neural network for solving nonlinear variational inequalities
    • Cheng L., Hou Z.-G., Tan M. A neutral-type delayed projection neural network for solving nonlinear variational inequalities. IEEE Trans. Circuits Syst. II: Exp. Briefs 2008, 55(8):806-810.
    • (2008) IEEE Trans. Circuits Syst. II: Exp. Briefs , vol.55 , Issue.8 , pp. 806-810
    • Cheng, L.1    Hou, Z.-G.2    Tan, M.3
  • 11
    • 84863500698 scopus 로고    scopus 로고
    • Margin based Pruning method for random forest
    • Yang Fan, Weihang Lu, Kai Luo Lin, Tao Li Margin based Pruning method for random forest. Neurocomputing 2012, 94:54-63.
    • (2012) Neurocomputing , vol.94 , pp. 54-63
    • Yang, F.1    Weihang, L.2    Kai, L.L.3    Tao, L.4
  • 12
    • 58149345703 scopus 로고    scopus 로고
    • A discriminative method for protein remote homology detection and fold recognition combining top-n-grams and latent semantic analysis
    • B. Liu, X. Wang, L. Lin, Q. Dong, X. Wang, A discriminative method for protein remote homology detection and fold recognition combining top-n-grams and latent semantic analysis, BMC Bioinf. 9 (2008), 510.
    • (2008) BMC Bioinf. , vol.9 , pp. 510
    • Liu, B.1    Wang, X.2    Lin, L.3    Dong, Q.4    Wang, X.5
  • 13
    • 84871399352 scopus 로고    scopus 로고
    • Learning to distribute vocabulary indexing for scalable visual search
    • Rongrong Ji, Duan Ling-Yu, Chen Jie, Yao Hongxun, Gao Wen Learning to distribute vocabulary indexing for scalable visual search. IEEE Trans. Multimed. 2013, 15(1):153-166.
    • (2013) IEEE Trans. Multimed. , vol.15 , Issue.1 , pp. 153-166
    • Rongrong, J.1    Duan, L.-Y.2    Chen, J.3    Yao, H.4    Gao, W.5
  • 15
    • 78649330520 scopus 로고    scopus 로고
    • Actor-independent action search using spatiotemporal vocabulary with appearance hashing
    • Rongrong Ji, Hongxun Yao, Xiaoshuai Sun Actor-independent action search using spatiotemporal vocabulary with appearance hashing. Pattern Recognit. 2011, 44(3):624-638.
    • (2011) Pattern Recognit. , vol.44 , Issue.3 , pp. 624-638
    • Rongrong, J.1    Hongxun, Y.2    Xiaoshuai, S.3
  • 19
    • 79955864876 scopus 로고    scopus 로고
    • Recurrent neural network for non-smooth convex optimization problems with application to the identification of genetic regulatory networks
    • Cheng L., Hou Z.-G., Lin Y., Tan M., Zhang W.J., Wu F.-X. Recurrent neural network for non-smooth convex optimization problems with application to the identification of genetic regulatory networks. IEEE Trans. Neural Netw. 2011, vol. 21(no. 5):714-726.
    • (2011) IEEE Trans. Neural Netw. , vol.21 , Issue.5 , pp. 714-726
    • Cheng, L.1    Hou, Z.-G.2    Lin, Y.3    Tan, M.4    Zhang, W.J.5    Wu, F.-X.6
  • 20
    • 84904761433 scopus 로고    scopus 로고
    • Review of protein subcellular localization prediction
    • Wang Zhen, Zou Quan, Jiang Yi, Ying Ju, Xiangxiang Zeng Review of protein subcellular localization prediction. Curr. Bioinf. 2014, 9(3):331-342.
    • (2014) Curr. Bioinf. , vol.9 , Issue.3 , pp. 331-342
    • Wang, Z.1    Zou, Q.2    Jiang, Y.3    Ying, J.4    Xiangxiang, Z.5
  • 21
    • 84881519843 scopus 로고    scopus 로고
    • BinMemPredict. a web server and software for predicting membrane protein types
    • Quan Zou Xubin, Li Yi, Jiang Yuming, Zhao Guohua Wang BinMemPredict. a web server and software for predicting membrane protein types. Curr. Proteom. 2013, 10(1):2-9.
    • (2013) Curr. Proteom. , vol.10 , Issue.1 , pp. 2-9
    • Quan Zou, X.1    Li, Y.2    Jiang, Y.3    Zhao, G.W.4
  • 22
    • 84874240374 scopus 로고    scopus 로고
    • Hierarchical classification of protein folds using a novel ensemble classifier
    • Chen Lin, Zou Ying, Qin Ji, Xiangrong Liu, Jiang Yi, Caihuan Ke, Quan Zou Hierarchical classification of protein folds using a novel ensemble classifier. PLoS One 2013, 8(2):e56499.
    • (2013) PLoS One , vol.8 , Issue.2
    • Chen, L.1    Zou, Y.2    Qin, J.3    Xiangrong, L.4    Jiang, Y.5    Caihuan, K.6    Quan, Z.7
  • 23
    • 84874229261 scopus 로고    scopus 로고
    • Identifying multi-functional enzyme with hierarchical multi-label classifier
    • Quan Zou, Weicheng Chen, Huang Yong, Xiangrong Liu, Jiang Yi Identifying multi-functional enzyme with hierarchical multi-label classifier. J. Comput. Theor. Nanosci. 2013, 10(4):1038-1043.
    • (2013) J. Comput. Theor. Nanosci. , vol.10 , Issue.4 , pp. 1038-1043
    • Quan, Z.1    Weicheng, C.2    Huang, Y.3    Xiangrong, L.4    Jiang, Y.5
  • 24
    • 84904606183 scopus 로고    scopus 로고
    • Identifying the subfamilies of voltage-gated potassium channels using feature selection technique
    • Liu W.X., Deng E.Z., Chen W., Lin H. Identifying the subfamilies of voltage-gated potassium channels using feature selection technique. Int. J. Mol. Sci. 2014, 15:12940-12951.
    • (2014) Int. J. Mol. Sci. , vol.15 , pp. 12940-12951
    • Liu, W.X.1    Deng, E.Z.2    Chen, W.3    Lin, H.4
  • 25
    • 84903784979 scopus 로고    scopus 로고
    • Identification of bacteriophage virion proteins with the ANOVA feature selection and analysis
    • Ding H., Feng P.M., Chen W., Lin H. Identification of bacteriophage virion proteins with the ANOVA feature selection and analysis. Mol. Biosyst. 2014, 10:2229-2235.
    • (2014) Mol. Biosyst. , vol.10 , pp. 2229-2235
    • Ding, H.1    Feng, P.M.2    Chen, W.3    Lin, H.4
  • 26
    • 84903592187 scopus 로고    scopus 로고
    • iCTX-Type: a sequence-based predictor for identifying the types of conotoxins in targeting ion channels
    • H. Ding, E.Z. Deng, L.F. Yuan, L. Liu, H. Lin, W. Chen, K.C. Chou, iCTX-Type: a sequence-based predictor for identifying the types of conotoxins in targeting ion channels, BioMed Res. Int. (2014), ID 286419.
    • (2014) BioMed Res. Int.
    • Ding, H.1    Deng, E.Z.2    Yuan, L.F.3    Liu, L.4    Lin, H.5    Chen, W.6    Chou, K.C.7
  • 28
    • 84878789801 scopus 로고    scopus 로고
    • Using over-represented tetrapeptides to predict protein submitochondrial locations
    • Lin H., Chen W., Yuan L.F., Li Z.Q., Ding H. Using over-represented tetrapeptides to predict protein submitochondrial locations. Acta Biotheor. 2013, 61(2):259-268.
    • (2013) Acta Biotheor. , vol.61 , Issue.2 , pp. 259-268
    • Lin, H.1    Chen, W.2    Yuan, L.F.3    Li, Z.Q.4    Ding, H.5
  • 30
    • 84892972298 scopus 로고    scopus 로고
    • Protein remote homology detection by combining Chou's pseudo amino acid composition and profile-based protein representation
    • Liu B., Wang X., Zou Q., Dong Q., Chen Q. Protein remote homology detection by combining Chou's pseudo amino acid composition and profile-based protein representation. Mol. Inf. 2013, 32:775-782.
    • (2013) Mol. Inf. , vol.32 , pp. 775-782
    • Liu, B.1    Wang, X.2    Zou, Q.3    Dong, Q.4    Chen, Q.5
  • 31
    • 84892954329 scopus 로고    scopus 로고
    • Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
    • Liu B., Zhang D., Xu R., Xu J., Wang X., Chen Q., Dong Q., Chou K.-C. Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. Bioinformatics 2014, 30(4):472-479.
    • (2014) Bioinformatics , vol.30 , Issue.4 , pp. 472-479
    • Liu, B.1    Zhang, D.2    Xu, R.3    Xu, J.4    Wang, X.5    Chen, Q.6    Dong, Q.7    Chou, K.-C.8
  • 32
    • 84867004398 scopus 로고    scopus 로고
    • Using amino acid physicochemical distance transformation for fast protein remote homology detection
    • Liu B., Wang X., Chen Q., Dong Q., Lan X. Using amino acid physicochemical distance transformation for fast protein remote homology detection. PLoS One 2012, 7(9):e46633.
    • (2012) PLoS One , vol.7 , Issue.9
    • Liu, B.1    Wang, X.2    Chen, Q.3    Dong, Q.4    Lan, X.5
  • 33
    • 84901288109 scopus 로고    scopus 로고
    • Using distances between top-n-gram and residue pairs for protein remote homology detection
    • Liu B., Xu J., Zou Q., Xu R., Wang X., Chen Q. Using distances between top-n-gram and residue pairs for protein remote homology detection. BMC Bioinf. 2014, 15(Suppl 2):S3.
    • (2014) BMC Bioinf. , vol.15 , pp. S3
    • Liu, B.1    Xu, J.2    Zou, Q.3    Xu, R.4    Wang, X.5    Chen, Q.6
  • 34
    • 84892466713 scopus 로고    scopus 로고
    • MiRClassify: an advanced web server for miRNA family classification and annotation
    • Quan Zou, Yaozong Mao, Lingling Hu, Yunfeng Wu, Zhiliang Ji miRClassify: an advanced web server for miRNA family classification and annotation. Comput. Biol. Med. 2014, 45:157-160.
    • (2014) Comput. Biol. Med. , vol.45 , pp. 157-160
    • Quan, Z.1    Yaozong, M.2    Lingling, H.3    Yunfeng, W.4    Zhiliang, J.5
  • 35
    • 84890098630 scopus 로고    scopus 로고
    • Briefing in family characteristics of MicroRNAs and their applications in cancer research
    • Qicong Wang, Leyi Wei, Xinjun Guan, Yunfeng Wu, Quan Zou, Zhiliang Ji, Briefing in family characteristics of MicroRNAs and their applications in cancer research, BBA-Proteins Proteom. 1844 (2014), 191-197.
    • (2014) BBA-Proteins Proteom. , vol.1844 , pp. 191-197
    • Wang, Q.1    Wei, L.2    Guan, X.3    Wu, Y.4    Zou, Q.5    Ji, Z.6
  • 36
    • 84888104685 scopus 로고    scopus 로고
    • Computational approaches in detecting non-coding RNA
    • Wang Chunyu, Leyi Wei, Maozu Guo, Quan Zou Computational approaches in detecting non-coding RNA. Curr. Genom. 2013, 14(6):371-377.
    • (2013) Curr. Genom. , vol.14 , Issue.6 , pp. 371-377
    • Wang, C.1    Leyi, W.2    Maozu, G.3    Quan, Z.4
  • 37
    • 84874899251 scopus 로고    scopus 로고
    • Computational analysis of miRNA target identification
    • Leyi Wei, Huang Yong, Yanyun Qu, Jiang Yi, Quan Zou Computational analysis of miRNA target identification. Curr. Bioinf. 2012, 7(4):512-525.
    • (2012) Curr. Bioinf. , vol.7 , Issue.4 , pp. 512-525
    • Leyi, W.1    Huang, Y.2    Yanyun, Q.3    Jiang, Y.4    Quan, Z.5
  • 38
    • 84861741791 scopus 로고    scopus 로고
    • PaGeFinder. quantitative identification of spatiotemporal pattern genes
    • Jiangbo Pan, Shichang Hu, Hao Wang, Quan Zou, Zhiliang Ji PaGeFinder. quantitative identification of spatiotemporal pattern genes. Bioinformatics 2012, 28(11):1544-1545.
    • (2012) Bioinformatics , vol.28 , Issue.11 , pp. 1544-1545
    • Jiangbo, P.1    Shichang, H.2    Hao, W.3    Quan, Z.4    Zhiliang, J.5
  • 39
    • 77952796368 scopus 로고    scopus 로고
    • TiSGeD. a database for tissue-specific genes
    • Shengjian Xiao, Zhang Chi, Quan Zou, Zhi-Liang Ji TiSGeD. a database for tissue-specific genes. Bioinformatics 2010, 26(9):1273-1275.
    • (2010) Bioinformatics , vol.26 , Issue.9 , pp. 1273-1275
    • Shengjian, X.1    Zhang, C.2    Quan, Z.3    Zhi-Liang, J.4
  • 40
    • 84891620711 scopus 로고    scopus 로고
    • PaGenBase. a pattern gene database for the global and dynamic understanding of gene function
    • Pan J.B., Hu S.C., Shi D., Cai M.C., Li Y.B., Zou Q., Ji Z.L. PaGenBase. a pattern gene database for the global and dynamic understanding of gene function. PLoS One 2013, 8(12):e80747.
    • (2013) PLoS One , vol.8 , Issue.12
    • Pan, J.B.1    Hu, S.C.2    Shi, D.3    Cai, M.C.4    Li, Y.B.5    Zou, Q.6    Ji, Z.L.7
  • 41
    • 68749110968 scopus 로고    scopus 로고
    • Exploiting three kinds of interface propensities to identify protein binding sites
    • Liu B., Wang X., Lin L., Dong Q., Wang X. Exploiting three kinds of interface propensities to identify protein binding sites. Comput. Biol. Chem. 2009, 2009(33):303-311.
    • (2009) Comput. Biol. Chem. , vol.2009 , Issue.33 , pp. 303-311
    • Liu, B.1    Wang, X.2    Lin, L.3    Dong, Q.4    Wang, X.5
  • 42
    • 71549172792 scopus 로고    scopus 로고
    • Prediction of protein binding sites in protein structures using hidden Markov support vector machine
    • Liu B., Wang X., Lin L., Tang B., Dong Q., Wang X. Prediction of protein binding sites in protein structures using hidden Markov support vector machine. BMC Bioinf. 2009, 10:381.
    • (2009) BMC Bioinf. , vol.10 , pp. 381
    • Liu, B.1    Wang, X.2    Lin, L.3    Tang, B.4    Dong, Q.5    Wang, X.6
  • 45
    • 24344458137 scopus 로고    scopus 로고
    • Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy
    • Peng H.C., Long F.H., Ding C. Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans. Pattern Anal. Mach. Intell. 2005, 27:1226-1238.
    • (2005) IEEE Trans. Pattern Anal. Mach. Intell. , vol.27 , pp. 1226-1238
    • Peng, H.C.1    Long, F.H.2    Ding, C.3
  • 46
  • 47
    • 84901332555 scopus 로고    scopus 로고
    • Improved and promising identification of human MicroRNAs by incorporating a high-quality negative set
    • Leyi Wei, Minghong Liao, Yue Gao, Rongrong Ji, Zengyou He, Quan Zou Improved and promising identification of human MicroRNAs by incorporating a high-quality negative set. IEEE/ACM Trans. Comput. Biol. Bioinf. 2014, 11(1):192-201.
    • (2014) IEEE/ACM Trans. Comput. Biol. Bioinf. , vol.11 , Issue.1 , pp. 192-201
    • Leyi, W.1    Minghong, L.2    Yue, G.3    Rongrong, J.4    Zengyou, H.5    Quan, Z.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.