High-speed flow microscopy using compressed sensing with ultrafast laser pulses

Optics Express

Volumn 23, Issue 8, 2015, Pages 10521-10532

  Bosworth, Bryan T ^a   Stroud, Jasper R ^a   Tran, Dung N ^a   Tran, Trac D ^a   Chin, Sang ^a,b,c   Foster, Mark A ^a  

^a Johns Hopkins University   (United States)

^b BOSTON UNIVERSITY   (United States)

^c CHARLES STARK DRAPER LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPRESSED SENSING; IMAGE RECONSTRUCTION; LASER PULSES; PULSE SHAPING; SIGNAL RECONSTRUCTION;

BROADBAND LASER PULSE; HIGH SPEED FLOWS; MICROSCOPIC FLOW; MICROSCOPIC IMAGING; NYQUIST SAMPLING; SPECTRAL SHAPING; STRUCTURED ILLUMINATION; ULTRAHIGH RATES;

ULTRAFAST LASERS;

EID: 84948698940     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.23.010521     Document Type: Article

References (45)

1. H. R. Petty, "Spatiotemporal chemical dynamics in living cells: from information trafficking to cell physiology, " BioSystems 83, 217-224 (2006).
2. P. Lang, K. Yeow, A. Nichols, and A. Scheer, "Cellular imaging in drug discovery, " Nat. Rev. Drug Discovery. 5, 343-356 (2006).
3. E. Brouzes, M. Medkova, N. Savenelli, D. Marran, M. Twardowski, J. B. Hutchison, J. M. Rothberg, D. R. Link, N. Perrimon, and M. L. Samuels, "Droplet microfluidic technology for single-cell high-throughput screening, " Proc. Natl. Acad. Sci. U. S. A. 106, 14195-14200 (2009).
4. K. Goda, A. Ayazi, D. R. Gossett, J. Sadasivam, C. K. Lonappan, E. Sollier, A. M. Fard, S. C. Hur, J. Adam, C. Murray, C. Wang, N. Brackbill, D. Di Carlo, and B. Jalali, "High-throughput single-microparticle imaging flow analyzer, " Proc. Natl. Acad. Sci. U. S. A. 11630-11635 (2012).
5. N. Rimon and M. Schuldiner, "Getting the whole picture: combining throughput with content in microscopy, " J. Cell Sci. 124, 3743-3751 (2011).
6. W. M. Weaver, P. Tseng, A. Kunze, M. Masaeli, A. J. Chung, J. S. Dudani, H. Kittur, R. P. Kulkarni, and D. D. Carlo, "Advances in high-throughput single-cell microtechnologies, " Curr. Opin. Biotechnol. 25, 114-123 (2014).
7. D. A. Basiji, W. E. Ortyn, L. Liang, V. Venkatachalam, and P. Morrissey, "Cellular image analysis and imaging by flow cytometry, " Clin. Lab. Med. 27, 653-670 (2007).
8. X System Software User's Manual, 4th ed. (2010).
9. K. Goda, K. Tsia, and B. Jalali, "Serial time-encoded amplified imaging for real-time observation of fast dynamic phenomena, " Nature 458, 1145-1149 (2009).
10. T. T. W. Wong, A. K. S. Lau, K. K. Y. Wong, and K. K. Tsia, "Optical time-stretch confocal microscopy at 1 μ m, " Opt. Lett. 37, 3330-3332 (2012).
11. T. T. W. Wong, A. K. S. Lau, K. K. Y. Ho, M. Y. H. Tang, J. D. F. Robles, X. Wei, A. C. S. Chan, A. H. L. Tang, E. Y. Lam, K. K. Y. Wong, G. C. F. Chan, H. C. Shum, and K. K. Tsia, "Asymmetric-detection time-stretch optical microscopy (ATOM) for ultrafast high-contrast cellular imaging in flow, " Sci. Rep. 4, 3656 (2014).
12. F. Xing, H. Chen, C. Lei, Z. Weng, M. Chen, S. Yang, and S. Xie, "Serial wavelength division 1 GHz line-scan microscopic imaging, " Photonics Res. 2, B31-B34 (2014).
13. H. Chen, C. Lei, F. Xing, Z. Weng, M. Chen, S. Yang, and S. Xie, "Multiwavelength time-stretch imaging system, " Opt. Lett. 39, 2202-2205 (2014).
14. M. El-Desouki, M. Jamal Deen, Q. Fang, L. Liu, F. Tse, and D. Armstrong, "CMOS image sensors for high speed applications, " Sensors 9, 430-444 (2009).
15. T. G. Etoh, D. V. Son, T. Yamada, and E. Charbon, "Toward one giga frames per second-evolution of in situ storage image sensors, " Sensors 13, 4640-4658 (2013).
16. T. Arai, J. Yonai, T. Hayashida, H. Ohtake, H. van Kuijk, and T. G. Etoh, "Back-side-illuminated image sensor with burst capturing speed of 5.2 Tpixel per second, " in Sensors, Cameras, and Systems for Industrial and Scientific Applications XIV, R. Widenhorn and A. Dupret, eds., Proc. SPIE 8659, 865904 (2013).
17. K. Nakagawa, A. Iwasaki, Y. Oishi, R. Horisaki, A. Tsukamoto, A. Nakamura, K. Hirosawa, H. Liao, T. Ushida, K. Goda, F. Kannari, and I. Sakuma, "Sequentially timed all-optical mapping photography (STAMP), " Nat. Photonics 8, 695-700 (2014).
18. L. Gao, J. Liang, C. Li, and L. V. Wang, "Single-shot compressed ultrafast photography at one hundred billion frames per second, " Nature 516, 74-77 (2014).
19. C. Azeredo-Leme, "Clock jitter effects on sampling: A tutorial, " IEEE Circuits Syst. Mag. 11, 26-37 (2011).
20. E. J. Candès and T. Tao, "Decoding by linear programming, " IEEE Trans. Inf. Theory 51, 4203-4215 (2005).
21. E. J. Candès, J. Romberg, and T. Tao, "Robust uncertainty principles: Exact signal reconstruction from highly incomplete frequency information, " IEEE Trans. Inf. Theory 52, 489-509 (2006).
22. D. L. Donoho, "Compressed sensing, " IEEE Trans. Inf. Theory 52, 1289-1306 (2006).
23. E. J. Candès and M. B. Wakin, "An introduction to compressive sampling, " IEEE Signal Process. Mag. 25, 21-30 (2008).
24. R. G. Baraniuk, "Compressive sensing, " IEEE Signal Process. Mag. 24, 118-124 (2007).
25. J. M. Nichols and F. Bucholtz, "Beating nyquist with light: a compressively sampled photonic link, " Opt. Express 19, 7339-7348 (2011).
26. G. C. Valley, G. A. Sefler, and T. J. Shaw, "Compressive sensing of sparse radio frequency signals using optical mixing, " Opt. Lett. 37, 4675-4677 (2012).
27. B. T. Bosworth and M. A. Foster, "High-speed ultrawideband photonically enabled compressed sensing of sparse radio frequency signals, " Opt. Lett. 38, 4892-4895 (2013).
28. Y. Liang, M. Chen, H. Chen, C. Lei, P. Li, and S. Xie, "Photonic-assisted multi-channel compressive sampling based on effective time delay pattern, " Opt. Express 21, 25700-25707 (2013).
29. Y. Chen, X. Yu, H. Chi, X. Jin, X. Zhang, S. Zheng, and M. Galili, "Compressive sensing in a photonic link with optical integration, " Opt. Lett. 39, 2222-2224 (2014).
30. M. H. Asghari and B. Jalali, "Anamorphic transformation and its application to time-bandwidth compression, " Appl. Opt. 52, 6735-6743 (2013).
31. M. H. Asghari and B. Jalali, "Experimental demonstration of optical real-time data compression, " Appl. Phys. Lett. 104, 111101 (2014).
32. B. T. Bosworth and M. A. Foster, "High-speed flow imaging utilizing spectral-encoding of ultrafast pulses and compressed sensing, " in CLEO: 2014, OSA Technical Digest (Optical Society of America, 2014), paper ATh4P.3.
33. A. C. Chan, A. Lau, K. Wong, E. Y. Lam, K. Tsia, and M. Z. Ren, "Two-dimensional spectral-encoding for high speed arbitrary patterned illumination, " in CLEO: 2014, OSA Technical Digest (Optical Society of America, 2014), paper STh1H.2.
34. H. Chen, Z. Weng, Y. Liang, C. Lei, F. Xing, M. Chen, and S. Xie, "High speed single-pixel imaging via time domain compressive sampling, " in CLEO: 2014, OSA Technical Digest (Optical Society of America, 2014), paper JTh2A.132.
35. A. C. S. Chan, E. Y. Lam, and K. K. Tsia, "Signal reduction in fluorescence imaging using radio frequency-multiplexed excitation by compressed sensing, " in Real-time Photonic Measurements, Data Management, and Processing, B. Jalali, M. Li, K. Goda, and M. H. Asghari, eds., Proc. SPIE 9279, 92790U (2014).
36. M. W. Marcellin, JPEG2000: Image Compression Fundamentals, Standards, and Practice (Springer, 2002).
37. S. Mallat, A Wavelet Tour of Signal Processing: The Sparse Way (Academic, 2008).
38. D. Takhar, J. N. Laska, M. B. Wakin, M. F. Duarte, D. Baron, S. Sarvotham, K. F. Kelly, and R. G. Baraniuk, "A new compressive imaging camera architecture using optical-domain compression, " Proc. SPIE 6065, 606509 (2006).
39. F. Magalhães, F. M. Araújo, M. V. Correia, M. Abolbashari, and F. Farahi, "Active illumination single-pixel camera based on compressive sensing, " Appl. Opt. 50, 405-414 (2011).
40. V. Studer, J. Bobin, M. Chahid, H. S. Mousavi, E. Candes, and M. Dahan, "Compressive fluorescence microscopy for biological and hyperspectral imaging, " Proc. Natl. Acad. Sci. U. S. A. 109, E1679-E1687 (2012).
41. S. A. Diddams, L. Hollberg, and V. Mbele, "Molecular fingerprinting with the resolved modes of a femtosecond laser frequency comb, " Nature 445, 627-630 (2007).
42. J. Yang, X. Yuan, X. Liao, P. Llull, D. Brady, G. Sapiro, and L. Carin, "Video compressive sensing using gaussian mixture models, " IEEE Trans. Image Process. 23, 4863-4878 (2014).
43. D. Solli, J. Chou, and B. Jalali, "Amplified wavelength-time transformation for real-time spectroscopy, " Nat. Photonics 2, 48-51 (2007).
44. J. Xu, C. Zhang, J. Xu, K. K. Y. Wong, and K. K. Tsia, "5 MHz all-optical swept-source optical coherence tomography based on amplified dispersive fourier transform, " in Optics in the Life Sciences, OSA Technical Digest (Optical Society of America, 2013), paper NW5B.5.
45. M. Mishali, Y. Eldar, and A. Elron, "Xampling: Signal acquisition and processing in union of subspaces, " IEEE Trans. Signal Process 59, 4719-4734 (2011).