QUANTITY: An isobaric tag for quantitative glycomics

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Yang, Shuang ^a   Wang, Meiyao ^b,f   Chen, Lijun ^a   Yin, Bojiao ^c   Song, Guoqiang ^d   Turko, Illarion V ^b,e   Phinney, Karen W ^e   Betenbaugh, Michael J ^c   Zhang, Hui ^a   Li, Shuwei ^b  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF MARYLAND   (United States)

^c Johns Hopkins University   (United States)

^d CHANGZHOU UNIVERSITY   (China)

^e NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

^f MEDIMMUNE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

POLYSACCHARIDE;

ALGORITHM; ANIMAL; CHEMISTRY; CHO CELL LINE; CRICETULUS; GLYCOSYLATION; HAMSTER; MASS SPECTROMETRY; METABOLISM; METABOLOMICS; PROCEDURES; PROTEOMICS; REPRODUCIBILITY;

ALGORITHMS; ANIMALS; CHO CELLS; CRICETINAE; CRICETULUS; GLYCOSYLATION; MASS SPECTROMETRY; METABOLOMICS; POLYSACCHARIDES; PROTEOMICS; REPRODUCIBILITY OF RESULTS;

EID: 84948690130     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep17585     Document Type: Article

References (28)

1. Dove, A. The bittersweet promise of glycobiology. Nat. Biotechnol. 19, 913-917 (2001).
2. Dennis, J. W., Nabi, I. R. & Demetriou, M. Metabolism, cell surface organization, and disease. Cell 139, 1229-1241 (2009).
3. Walsh, G. & Jefferis, R. Post-translational modifications in the context of therapeutic proteins. Nat. Biotechnol. 24, 1241-1252 (2006).
4. Marino, K., Bones, J., Kattla, J. J. & Rudd, P. M. A systematic approach to protein glycosylation analysis: a path through the maze. Nat. Chem. Biol. 6, 713-723 (2010).
5. Raman, R., Raguram, S., Venkataraman, G., Paulson, J. C. & Sasisekharan, R. Glycomics: an integrated systems approach to structure-function relationships of glycans. Nat. Methods 2, 817-824 (2005).
6. Ruhaak, L. R. et al. Glycan labeling strategies and their use in identification and quantification. Anal. Bioanal. Chem. 397, 3457-3481 (2010).
7. Lauber, M. A. et al. Rapid Preparation of Released N-Glycans for HILIC Analysis Using a Labeling Reagent that Facilitates Sensitive Fluorescence and ESI-MS Detection. Anal. Chem. 87, 5401-5409 (2015).
8. Zhang, J., Wang, Y. & Li, S. Deuterium isobaric amine-reactive tags for quantitative proteomics. Anal. Chem. 82, 7588-7595 (2010).
9. Zeng, D. & Li, S. Revival of deuterium-labeled reagents for protein quantitation. Chem. Commun. 23, 3369-3371 (2009).
10. Chen, Z. et al. Comparative Evaluation of Two Isobaric Labeling Tags, DiART and iTRAQ. Anal. Chem. 84, 2908-2915 (2012).
11. Yuan, W., Zhang, J., Li, S. & Edwards, J. L. Amine metabolomics of hyperglycemic endothelial cells using capillary LC-MS with isobaric tagging. J. Proteome Res. 10, 5242-5250 (2011).
12. Yuan, W., Anderson, K. W., Li, S. & Edwards, J. L. Subsecond absolute quantitation of amine metabolites using isobaric tags for discovery of pathway activation in mammalian cells. Anal. Chem. 84, 2892-2899 (2012).
13. McAlister, G. C. et al. Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses. Anal. Chem. 84, 7469-7478 (2012).
14. Hahne, H. et al. Carbonyl-reactive tandem mass tags for the proteome-wide quantification of N-linked glycans. Anal. Chem. 84, 3716-3724 (2012).
15. Yang, S. et al. Glycan analysis by isobaric aldehyde reactive tags and mass spectrometry. Anal. Chem. 85, 8188-8195 (2013).
16. Bigge, J. C. et al. Nonselective and efficient fluorescent labeling of glycans using 2-amino benzamide and anthranilic acid. Anal. Biochem. 230, 229-238 (1995).
17. Ahn, J., Bones, J., Yu, Y. Q., Rudd, P. M. & Gilar, M. Separation of 2-aminobenzamide labeled glycans using hydrophilic interaction chromatography columns packed with 1.7 μ m sorbent. J. Chromatogr. B 878, 403-408 (2010).
18. Cai, Y., Ling, C.-C. & Bundle, D. R. Facile approach to 2-acetamido-2-deoxy-β -D-glucopyranosides via a furanosyl oxazoline. Org. Lett. 7, 4021-4024 (2005).
19. Bragonzi, A. et al. A new Chinese hamster ovary cell line expressing α 2, 6-sialyltransferase used as universal host for the production of human-like sialylated recombinant glycoproteins. Biochim. Biophys. 1474, 273-282 (2000).
20. Yin, B. et al. Glycoengineering of Chinese hamster ovary cells for enhanced erythropoietin N-glycan branching and sialylation. Biotechnol. Bioeng. 112, 2343-2351 (2015).
21. Egrie, J. C., Dwyer, E., Browne, J. K., Hitz, A. & Lykos, M. A. Darbepoetin alfa has a longer circulating half-life and greater in vivo potency than recombinant human erythropoietin. Exp. Hematol. 31, 290-299 (2003).
22. Bork, K., Horstkorte, R. & Weidemann, W. Increasing the sialylation of therapeutic glycoproteins: the potential of the sialic acid biosynthetic pathway. J. Pharma. Sci. 98, 3499-3508 (2009).
23. Yang, S., Li, Y., Shah, P. & Zhang, H. Glycomic analysis using glycoprotein immobilization for glycan extraction. Anal. Chem. 85, 5555-5561 (2013).
24. Bowman, M. J. & Zaia, J. Tags for the stable isotopic labeling of carbohydrates and quantitative analysis by mass spectrometry. Anal. Chem. 79, 5777-5784 (2007).
25. Morell, A. G., Gregoriadis, G., Scheinberg, I. H., Hickman, J. & Ashwell, G. The role of sialic acid in determining the survival of glycoproteins in the circulation. J. Biol. Chem. 246, 1461-1467 (1971).
26. Yang, S. et al. Integrated glycoprotein immobilization method for glycopeptide and glycan analysis of cardiac hypertrophy. Anal. Chem. 87, 9671-9678 (2015).
27. Yang, S., Rubin, A., Eshghi, S. T. & Zhang, H. Chemoenzymatic method for glycomics: isolation, identification, and quantitation. Proteomics DOI (10.1002/pmic.201500266), (2015).
28. Yang, S. & Zhang, H. Glycan analysis by reversible reaction to hydrazide beads and mass spectrometry. Anal. Chem. 84, 2232-2238 (2012).