A mechanism of glucose tolerance and stimulation of GH1 β-glucosidases

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Yang, Yang ^a,b   Zhang, Xinxin ^a,b   Yin, Qiang ^a,b   Fang, Wei ^a,b   Fang, Zemin ^a,b   Wang, Xiaotang ^c   Zhang, Xuecheng ^a,b   Xiao, Yazhong ^a,b  

^a ANHUI UNIVERSITY   (China)

^b Anhui Provincial Engineering Technology Research Center of Microorganisms and Biocatalysis   (China)

^c FLORIDA INTERNATIONAL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLUCOSE; GLYCOSIDASE;

AMINO ACID SEQUENCE; BINDING SITE; CHEMISTRY; ENZYME SPECIFICITY; ENZYMOLOGY; FIRMICUTES; GENETICS; GLYCOSYLATION; KINETICS; METABOLISM; MOLECULAR DOCKING; PAENIBACILLUS; PROTEIN DATABASE; PROTEIN TERTIARY STRUCTURE; SITE DIRECTED MUTAGENESIS; THERMODYNAMICS;

AMINO ACID SEQUENCE; BINDING SITES; DATABASES, PROTEIN; FIRMICUTES; GLUCOSE; GLYCOSIDE HYDROLASES; GLYCOSYLATION; KINETICS; MOLECULAR DOCKING SIMULATION; MUTAGENESIS, SITE-DIRECTED; PAENIBACILLUS; PROTEIN STRUCTURE, TERTIARY; SUBSTRATE SPECIFICITY; THERMODYNAMICS;

EID: 84948441858     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep17296     Document Type: Article

References (36)

1. Leah, R., Kigel, J., Svendsen, I. & Mundy, J. Biochemical and molecular characterization of a barley seed beta-glucosidase. J. Biol. Chem. 270, 15789-15797 (1995).
2. Gueguen, Y., Chemardin, P., Janbon, G., Arnaud, A. & Galzy, P. A very efficient β-glucosidase catalyst for the hydrolysis of flavor precursors of wines and fruit juices. J. Agr. Food Chem. 44, 2336-2340 (1996).
3. Maicas, S. & Mateo, J. J. Hydrolysis of terpenyl glycosides in grape juice and other fruit juices: a review. Appl. Microbiol. Biotechnol. 67, 322-335 (2005).
4. Cheng, L. Q., Na, J. R., Bang, M. H., Kim, M. K. & Yang, D. C. Conversion of major ginsenoside Rb1 to 20(S)-ginsenoside Rg3 by Microbacterium sp. GS514. Phytochemistry. 69, 218-224 (2008).
5. An, C. L. et al. Analysis of bgl operon structure and characterization of beta-glucosidase from Pectobacterium carotovorum subsp. carotovorum LY34. Biosci. Biotechnol. Biochem. 68, 2270-2278 (2004).
6. Coughlan, M. P. The properties of fungal and bacterial cellulases with comment on their production and application. Biotechnol. Genet. Eng. Rev. 3, 39-110 (1985).
7. Howell, J. A. & Stuck, J. D. Kinetics of solka floc cellulose hydrolysis by Trichoderma viride cellulase. Biotechnol. Bioeng. 17, 873-893 (1975).
8. Saha, B. C. & Bothast, R. J. Production, purification, and characterization of a highly glucose-tolerant novel beta-glucosidase from Candida peltata. Appl. Environ. Microbiol. 62, 3165-3170 (1996).
9. Singhania, R. R., Patel, A. K., Sukumaran, R. K., Larroche, C. & Pandey, A. Role and significance of beta-glucosidases in the hydrolysis of cellulose for bioethanol production. Bioresour. Technol. 127, 500-507 (2013).
10. Hong, J., Tamaki, H. & Kumagai, H. Unusual hydrophobic linker region of beta-glucosidase (BGLII) from Thermoascus aurantiacus is required for hyper-activation by organic solvents. Appl. Microbiol. Biotechnol. 73, 80-88 (2006).
11. Watanabe, T., Sato, T., Yoshioka, S., Koshijima, T. & Kuwahara, M. Purification and properties of Aspergillus niger beta-glucosidase. Eur. J. Biochem. 209, 651-659 (1992).
12. Bhatia, Y., Mishra, S. & Bisaria, V. S. Microbial beta-glucosidases: cloning, properties, and applications. Crit. Rev. Biotechnol. 22, 375-407 (2002).
13. Riou, C., Salmon, J. M., Vallier, M. J., Gunata, Z. & Barre, P. Purification, characterization, and substrate specificity of a novel highly glucose-tolerant beta-glucosidase from Aspergillus oryzae. Appl. Environ. Microbiol. 64, 3607-3614 (1998).
14. Belancic, A., Gunata, Z., Vallier, M. J. & Agosin, E. Beta-glucosidase from the grape native yeast Debaryomyces vanrijiae: purification, characterization, and its effect on monoterpene content of a Muscat grape juice. J. Agr. Food Chem. 51, 1453-1459 (2003).
15. Zanoelo, F. F., Polizeli, M. L., Terenzi, H. F. & Jorge, J. A. Beta-glucosidase activity from the thermophilic fungus Scytalidium thermophilum is stimulated by glucose and xylose. Fems Microbiol. Lett. 240, 137-143 (2004).
16. Cantarel, B. L. et al. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 37, D233-D238 (2009).
17. Uchima, C. A., Tokuda, G., Watanabe, H., Kitamoto, K. & Arioka, M. Heterologous expression and characterization of a glucose-stimulated beta-glucosidase from the termite Neotermes koshunensis In Aspergillus oryzae. Appl. Microbiol. Biotechnol. 89, 1761-1771 (2011).
18. Uchiyama, T., Miyazaki, K. & Yaoi, K. Characterization of a novel beta-glucosidase from a compost microbial metagenome with strong transglycosylation activity. J. Biol. Chem. 288, 18325-18334 (2013).
19. Fang, Z. et al. Cloning and characterization of a beta-glucosidase from marine microbial metagenome with excellent glucose tolerance. J. Microbiol. Biotechnol. 20, 1351-1358 (2010).
20. Waldron Jr, C. R., Becker-Vallone, C. A. & Eveleigh, D. E. Isolation and characterization of a cellulolytic actinomycete Microbispora bispora. Appl. Microbiol. Biot. 24, 477-486 (1986).
21. Klyosov, A. A. Trends in biochemistry and enzymology of cellulose degradation. Biochemistry-Us. 29, 10577-10585 (1990).
22. Xiao, Z., Zhang, X., Gregg, D. J. & Saddler, J. N. Effects of sugar inhibition on cellulases and beta-glucosidase during enzymatic hydrolysis of softwood substrates. Appl. Biochem. Biotechnol. 113-116, 1115-1126 (2004).
23. Souza, F. H. M. et al. Purification and biochemical characterization of a mycelial glucose-and xylose-stimulated β-glucosidase from the thermophilic fungus Humicola insolens. Process Biochem. 45, 272-278 (2010).
24. Pei, J., Pang, Q., Zhao, L., Fan, S. & Shi, H. Thermoanaerobacterium thermosaccharolyticum beta-glucosidase: a glucose-tolerant enzyme with high specific activity for cellobiose. Biotechnol. Biofuels. 5, 31 (2012).
25. de Giuseppe, P. O. et al. Structural basis for glucose tolerance in GH1 beta-glucosidases. Acta Crystallogr D Biol Crystallogr. 70, 1631-1639 (2014).
26. Fang, W. et al. [Cloning and characterization of a beta-glucosidase from marine metagenome]. Sheng Wu Gong Cheng Xue Bao. 25, 1914-1920 (2009).
27. Biasini, M. et al. SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res. 42, W252-W258 (2014).
28. Chuenchor, W. et al. Structural insights into rice BGlu1 β-glucosidase oligosaccharide hydrolysis and transglycosylation. J. Mol. Biol. 377, 1200-1215 (2008).
29. Liu, J. et al. The 184th residue of beta-glucosidase Bgl1B plays an important role in glucose tolerance. J. Biosci. Bioeng. 112, 447-450 (2011).
30. Isorna, P. et al. Crystal structures of Paenibacillus polymyxa beta-glucosidase B complexes reveal the molecular basis of substrate specificity and give new insights into the catalytic machinery of family I glycosidases. J. Mol. Biol. 371, 1204-1218 (2007).
31. Hassan, N. et al. Biochemical and structural characterization of a thermostable beta-glucosidase from Halothermothrix orenii for galacto-oligosaccharide synthesis. Appl. Microbiol. Biotechnol. 99, 1731-1744 (2015).
32. DeLano W. L. The PyMOL molecular graphics system, version 1.3, Schrödinger, LLC. (2002).
33. Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics. 23, 2947-2948 (2007).
34. Robert, X. & Gouet, P. Deciphering key features in protein structures with the new ENDscript server. Nucleic Acids Res. 42, W320-W324 (2014).
35. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K. & Pease, L. R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene. 77, 51-59 (1989).
36. Morris, G. M. et al. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 19, 1639-1662 (1998).