-
1
-
-
34247210823
-
Microbial ecology of the cystic fibrosis lung
-
Harrison, F. Microbial ecology of the cystic fibrosis lung. Microbiology 153, 917-923, doi: 10.1099/mic.0.2006/004077-0 (2007).
-
(2007)
Microbiology
, vol.153
, pp. 917-923
-
-
Harrison, F.1
-
2
-
-
84857549287
-
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype
-
Coggan, K. A., Wolfgang, M. C. Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype. Current issues in molecular biology 14, 47-70 (2012).
-
(2012)
Current Issues in Molecular Biology
, vol.14
, pp. 47-70
-
-
Coggan, K.A.1
Wolfgang, M.C.2
-
3
-
-
77749315745
-
In vitro combinations of antibiotics and phytochemicals against Pseudomonas aeruginosa
-
Sakharkar, M. K. et al. In vitro combinations of antibiotics and phytochemicals against Pseudomonas aeruginosa. Journal of microbiology, immunology, and infection 42, 364-370 (2009).
-
(2009)
Journal of Microbiology, Immunology, and Infection
, vol.42
, pp. 364-370
-
-
Sakharkar, M.K.1
-
4
-
-
84871787592
-
A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence
-
Balasubramanian, D., Schneper, L., Kumari, H., Mathee, K. A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence. Nucleic acids research 41, 1-20, doi: 10.1093/nar/gks1039 (2013).
-
(2013)
Nucleic Acids Research
, vol.41
, pp. 1-20
-
-
Balasubramanian, D.1
Schneper, L.2
Kumari, H.3
Mathee, K.4
-
5
-
-
0033591467
-
Bacterial biofilms: A common cause of persistent infections
-
Costerton, J. W., Stewart, P. S., Greenberg, E. P. Bacterial biofilms: a common cause of persistent infections. Science 284, 1318-1322 (1999).
-
(1999)
Science
, vol.284
, pp. 1318-1322
-
-
Costerton, J.W.1
Stewart, P.S.2
Greenberg, E.P.3
-
6
-
-
0031724115
-
Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development
-
O'Toole, G. A., Kolter, R. Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Molecular microbiology 30, 295-304 (1998).
-
(1998)
Molecular Microbiology
, vol.30
, pp. 295-304
-
-
O'Toole, G.A.1
Kolter, R.2
-
7
-
-
0029814366
-
Microbial pathogenesis in cystic fibrosis: Mucoid Pseudomonas aeruginosa and Burkholderia cepacia
-
Govan, J. R., Deretic, V. Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. Microbiological reviews 60, 539-574 (1996).
-
(1996)
Microbiological Reviews
, vol.60
, pp. 539-574
-
-
Govan, J.R.1
Deretic, V.2
-
8
-
-
0242417146
-
Highly adherent small-colony variants of Pseudomonas aeruginosa in cystic fibrosis lung infection
-
Haussler, S. et al. Highly adherent small-colony variants of Pseudomonas aeruginosa in cystic fibrosis lung infection. Journal of medical microbiology 52, 295-301 (2003).
-
(2003)
Journal of Medical Microbiology
, vol.52
, pp. 295-301
-
-
Haussler, S.1
-
9
-
-
23744479941
-
Characterization of colony morphology variants isolated from Pseudomonas aeruginosa biofilms
-
Kirisits, M. J., Prost, L., Starkey, M., Parsek, M. R. Characterization of colony morphology variants isolated from Pseudomonas aeruginosa biofilms. Applied and environmental microbiology 71, 4809-4821, doi: 10.1128/AEM.71.8.4809-4821.2005 (2005).
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 4809-4821
-
-
Kirisits, M.J.1
Prost, L.2
Starkey, M.3
Parsek, M.R.4
-
10
-
-
36549026048
-
Role of polysaccharides in Pseudomonas aeruginosa biofilm development
-
Ryder, C., Byrd, M., Wozniak, D. J. Role of polysaccharides in Pseudomonas aeruginosa biofilm development. Current opinion in microbiology 10, 644-648, doi: 10.1016/j.mib.2007.09.010 (2007).
-
(2007)
Current Opinion in Microbiology
, vol.10
, pp. 644-648
-
-
Ryder, C.1
Byrd, M.2
Wozniak, D.J.3
-
11
-
-
63049137897
-
Principles of c-di-GMP signalling in bacteria
-
Hengge, R. Principles of c-di-GMP signalling in bacteria. Nature reviews. Microbiology 7, 263-273, doi: 10.1038/nrmicro2109 (2009).
-
(2009)
Nature Reviews. Microbiology
, vol.7
, pp. 263-273
-
-
Hengge, R.1
-
12
-
-
33845403359
-
Mechanisms of cyclic-di-GMP signaling in bacteria
-
Jenal, U., Malone, J. Mechanisms of cyclic-di-GMP signaling in bacteria. Annual review of genetics 40, 385-407, doi: 10.1146/annurev.genet.40.110405.090423 (2006).
-
(2006)
Annual Review of Genetics
, vol.40
, pp. 385-407
-
-
Jenal, U.1
Malone, J.2
-
14
-
-
4744337730
-
A putative phosphodiesterase, and HmsT, a putative diguanylate cyclase, control Hms-dependent biofilm formation in Yersinia pestis
-
Kirillina, O., Fetherston, J. D., Bobrov, A. G., Abney, J., Perry, R. D. HmsP, a putative phosphodiesterase, and HmsT, a putative diguanylate cyclase, control Hms-dependent biofilm formation in Yersinia pestis. Molecular microbiology 54, 75-88, doi: 10.1111/j.1365-2958.2004.04253.x (2004).
-
(2004)
Molecular Microbiology
, vol.54
, pp. 75-88
-
-
Kirillina, O.1
Fetherston, J.D.2
Bobrov, A.G.3
Abney, J.4
Perry, R.D.5
Hms, P.6
-
15
-
-
33644516891
-
Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3-5)-cyclic-GMP in virulence
-
Kulasakara, H. et al. Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3-5)-cyclic-GMP in virulence. Proceedings of the National Academy of Sciences of the United States of America 103, 2839-2844, doi: 10.1073/pnas.0511090103 (2006).
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, pp. 2839-2844
-
-
Kulasakara, H.1
-
16
-
-
4344688129
-
GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility
-
Simm, R., Morr, M., Kader, A., Nimtz, M., Romling, U. GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility. Molecular microbiology 53, 1123-1134, doi: 10.1111/j.1365-2958.2004.04206.x (2004).
-
(2004)
Molecular Microbiology
, vol.53
, pp. 1123-1134
-
-
Simm, R.1
Morr, M.2
Kader, A.3
Nimtz, M.4
Romling, U.5
-
17
-
-
77950405367
-
Yfi BNR mediates cyclic di-GMP dependent small colony variant formation and persistence in Pseudomonas aeruginosa
-
Malone, J. G. et al. YfiBNR mediates cyclic di-GMP dependent small colony variant formation and persistence in Pseudomonas aeruginosa. PLoS pathogens 6, e1000804, doi: 10.1371/journal.ppat.1000804 (2010).
-
(2010)
PLoS Pathogens
, vol.6
, pp. e1000804
-
-
Malone, J.G.1
-
18
-
-
79954699584
-
GGDEF proteins YeaI YedQ, and YfiN reduce early biofilm formation and swimming motility in Escherichia coli
-
Sanchez-Torres, V., Hu, H., Wood, T. K. GGDEF proteins YeaI, YedQ, and YfiN reduce early biofilm formation and swimming motility in Escherichia coli. Applied microbiology and biotechnology 90, 651-658, doi: 10.1007/s00253-010-3074-5 (2011).
-
(2011)
Applied Microbiology and Biotechnology
, vol.90
, pp. 651-658
-
-
Sanchez-Torres, V.1
Hu, H.2
Wood, T.K.3
-
19
-
-
36749091176
-
Mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in a complex environment
-
Giddens, S. R. et al. Mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in a complex environment. Proceedings of the National Academy of Sciences of the United States of America 104, 18247-18252, doi: 10.1073/pnas.0706739104 (2007).
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 18247-18252
-
-
Giddens, S.R.1
-
20
-
-
34848889244
-
A comprehensive genetic characterization of bacterial motility
-
Girgis, H. S., Liu, Y., Ryu, W. S., Tavazoie, S. A comprehensive genetic characterization of bacterial motility. PLoS genetics 3, 1644-1660, doi: 10.1371/journal.pgen.0030154 (2007).
-
(2007)
PLoS Genetics
, vol.3
, pp. 1644-1660
-
-
Girgis, H.S.1
Liu, Y.2
Ryu, W.S.3
Tavazoie, S.4
-
21
-
-
80052315142
-
MrkH a novel c-di-GMP-dependent transcriptional activator controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression
-
Wilksch, J. J. et al. MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression. PLoS pathogens 7, e1002204, doi: 10.1371/journal.ppat.1002204 (2011).
-
(2011)
PLoS Pathogens
, vol.7
, pp. e1002204
-
-
Wilksch, J.J.1
-
22
-
-
67650863623
-
Connecting quorum sensing c-di-GMP pel polysaccharide and biofilm formation in Pseudomonas aeruginosa through tyrosine phosphatase TpbA (PA3885)
-
Ueda, A., Wood, T. K. Connecting quorum sensing, c-di-GMP, pel polysaccharide, and biofilm formation in Pseudomonas aeruginosa through tyrosine phosphatase TpbA (PA3885). PLoS pathogens 5, e1000483, doi: 10.1371/journal.ppat.1000483 (2009).
-
(2009)
PLoS Pathogens
, vol.5
, pp. e1000483
-
-
Ueda, A.1
Wood, T.K.2
-
23
-
-
84896718101
-
Investigating the allosteric regulation of YfiN from Pseudomonas aeruginosa: Clues from the structure of the catalytic domain
-
Giardina, G. et al. Investigating the allosteric regulation of YfiN from Pseudomonas aeruginosa: clues from the structure of the catalytic domain. PloS one 8, e81324, doi: 10.1371/journal.pone.0081324 (2013).
-
(2013)
PloS One
, vol.8
, pp. e81324
-
-
Giardina, G.1
-
24
-
-
84864052471
-
The YfiBNR signal transduction mechanism reveals novel targets for the evolution of persistent Pseudomonas aeruginosa in cystic fibrosis airways
-
Malone, J. G. et al. The YfiBNR signal transduction mechanism reveals novel targets for the evolution of persistent Pseudomonas aeruginosa in cystic fibrosis airways. PLoS pathogens 8, e1002760, doi: 10.1371/journal.ppat.1002760 (2012).
-
(2012)
PLoS Pathogens
, vol.8
, pp. e1002760
-
-
Malone, J.G.1
-
25
-
-
84884217273
-
Genetic analysis of the role of yfiR in the ability of Escherichia coli CFT073 to control cellular cyclic dimeric GMP levels and to persist in the urinary tract
-
Raterman, E. L., Shapiro, D. D., Stevens, D. J., Schwartz, K. J., Welch, R. A. Genetic analysis of the role of yfiR in the ability of Escherichia coli CFT073 to control cellular cyclic dimeric GMP levels and to persist in the urinary tract. Infection and immunity 81, 3089-3098, doi: 10.1128/IAI.01396-12 (2013).
-
(2013)
Infection and Immunity
, vol.81
, pp. 3089-3098
-
-
Raterman, E.L.1
Shapiro, D.D.2
Stevens, D.J.3
Schwartz, K.J.4
Welch, R.A.5
-
26
-
-
84907835236
-
The disulfide bonding system suppresses CsgD-independent cellulose production in Escherichia coli
-
Hufnagel, D. A., DePas, W. H., Chapman, M. R. The disulfide bonding system suppresses CsgD-independent cellulose production in Escherichia coli. Journal of bacteriology 196, 3690-3699, doi: 10.1128/JB.02019-14 (2014).
-
(2014)
Journal of Bacteriology
, vol.196
, pp. 3690-3699
-
-
Hufnagel, D.A.1
DePas, W.H.2
Chapman, M.R.3
-
27
-
-
84934178776
-
Crystal structures of YfiR from Pseudomonas aeruginosa in two redox states
-
Yang, X. et al. Crystal structures of YfiR from Pseudomonas aeruginosa in two redox states. Biochemical and biophysical research communications, doi: 10.1016/j.bbrc.2015.03.160 (2015).
-
(2015)
Biochemical and Biophysical Research Communications
-
-
Yang, X.1
-
28
-
-
33144490288
-
Peptidoglycan recognition by Pal, an outer membrane lipoprotein
-
Parsons, L. M., Lin, F., Orban, J. Peptidoglycan recognition by Pal, an outer membrane lipoprotein. Biochemistry 45, 2122-2128, doi: 10.1021/bi052227i (2006).
-
(2006)
Biochemistry
, vol.45
, pp. 2122-2128
-
-
Parsons, L.M.1
Lin, F.2
Orban, J.3
-
29
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E., Henrick, K. Inference of macromolecular assemblies from crystalline state. Journal of molecular biology 372, 774-797, doi: 10.1016/j.jmb.2007.05.022 (2007).
-
(2007)
Journal of Molecular Biology
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
30
-
-
77954257799
-
ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
Ashkenazy, H., Erez, E., Martz, E., Pupko, T., Ben-Tal, N. ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic acids research 38, W529-533, doi: 10.1093/nar/gkq399 (2010).
-
(2010)
Nucleic Acids Research 38 W529-533
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
-
31
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project N
-
Collaborative Computational Project, N. The CCP4 suite: programs for protein crystallography. Acta crystallographica. Section D, Biological crystallography 50, 760-763, doi: 10.1107/S0907444994003112 (1994).
-
(1994)
Acta Crystallographica. Section D Biological Crystallography
, vol.50
, pp. 760-763
-
-
-
32
-
-
84907203432
-
Conformational change in the periplamic region of the flagellar stator coupled with the assembly around the rotor
-
Zhu, S. et al. Conformational change in the periplamic region of the flagellar stator coupled with the assembly around the rotor. Proceedings of the National Academy of Sciences of the United States of America 111, 13523-13528, doi: 10.1073/pnas.1324201111 (2014).
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, pp. 13523-13528
-
-
Zhu, S.1
-
33
-
-
82455210507
-
Role of the MotB linker in the assembly and activation of the bacterial flagellar motor. Acta crystallographica. Section D
-
O'Neill, J., Xie, M., Hijnen, M., Roujeinikova, A. Role of the MotB linker in the assembly and activation of the bacterial flagellar motor. Acta crystallographica. Section D, Biological crystallography 67, 1009-1016, doi: 10.1107/S0907444911041102 (2011).
-
(2011)
Biological Crystallography
, vol.67
, pp. 1009-1016
-
-
O'Neill, J.1
Xie, M.2
Hijnen, M.3
Roujeinikova, A.4
-
34
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., Minor, W. Processing of X-ray Diffraction Data Collected in Oscillation Mode. Methods in Enzymology 276, 307-326 (1997).
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
35
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J. et al. Phaser crystallographic software. Journal of applied crystallography 40, 658-674, doi: 10.1107/S0021889807021206 (2007).
-
(2007)
Journal of Applied Crystallography
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
36
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution acta crystallographica. Section D
-
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta crystallographica. Section D, Biological crystallography 66, 213-221, doi: 10.1107/S0907444909052925 (2010).
-
(2010)
Biological Crystallography
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
37
-
-
77949535720
-
Features and development of Coot. Acta crystallographica. Section D
-
Emsley, P., Lohkamp, B., Scott, W. G., Cowtan, K. Features and development of Coot. Acta crystallographica. Section D, Biological crystallography 66, 486-501, doi: 10.1107/S0907444910007493 (2010).
-
(2010)
Biological Crystallography
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
38
-
-
74549178560
-
Mol probity: All-atom structure validation for macromolecular crystallography. Acta crystallographica. Section D
-
Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta crystallographica. Section D, Biological crystallography 66, 12-21, doi: 10.1107/S0907444909042073 (2010).
-
(2010)
Biological Crystallography
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
|