Mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in a complex environment

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 46, 2007, Pages 18247-18252

  Giddens, Stephen R ^a   Jackson, Robert W ^a,c   Moon, Christina D ^a,d   Jacobs, Michael A ^b   Zhang, Xue Xian ^a,e   Gehrig, Stefanie M ^a   Rainey, Paul B ^a,e  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF WASHINGTON   (United States)

^c UNIVERSITY OF READING   (United Kingdom)

^d AGRESEARCH GRASSLANDS   (New Zealand)

^e MASSEY UNIVERSITY   (New Zealand)

Author keywords

Functional genomics; Gene expression; Gene regulation; Phytosphere; Pseudomonas fluorescens

Indexed keywords

BACTERIAL PROTEIN; DIGUANYLATE CYCLASE; PROTEIN AMRZ; PROTEIN FLEQ; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; ECOLOGICAL NICHE; FUNCTIONAL GENOMICS; GENE ACTIVITY; GENE CONTROL; GENE FUNCTION; GENE IDENTIFICATION; GENE MUTATION; MUTAGENESIS; NONHUMAN; OPERON; PRIORITY JOURNAL; PSEUDOMONAS FLUORESCENS; TRANSPOSON;

BACTERIA; BASE SEQUENCE; DNA PRIMERS; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS; PLANTS; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); PSEUDOMONAS FLUORESCENS;

EID: 36749091176     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0706739104     Document Type: Article

References (38)

1. Rainey PB (1999) Environ Microbiol 1:243-257.
2. Preston GM, Bertrand N, Rainey PB (2001) Mol Microbiol 41:999-1014.
3. Gal M, Preston GM, Massey RC, Spiers AJ, Rainey PB (2003) Mol Ecol 12:3109-3121.
4. Zhang X-X, Lilley A, Bailey MJ, Rainey PB (2004) FEMS Microbiol Ecol 51:9-17.
5. Jackson RW, Preston GM, Rainey PB (2005) J Bacteriol 187:8477-8488.
6. Zhang X-X, George A, Bailey MJ, Rainey PB (2006) Microbiology 152:1867-1875.
7. Zhang X-X, Rainey PB (2007) Mol Plant-Microbe Interact 20:581-588.
8. Zhang X-X, Rainey PB (2007) Genetics 176:2165-2176.
9. Jackson RW, Giddens SR (2006) Infect Disord Drug Targets 6:207-240.
10. Rediers H, Rainey PB, Vanderleyden J, Mot R (2005) Microbiol Mol Biol Rev 269:217-261.
11. de Lorenzo V, Herrero M, Jakubzik U, Timmis KN (1990) J Bacteriol 172:6568-6572.
12. Jacobs MA, Alwood A, Thaipisuttikul I, Spencer D, Haugen E, Ernst S, Will O, Kaul R, Raymond C, Levy R, et al. (2003) Proc Natl Acad Sci USA 100:14339-14344.
13. Goymer P, Kahn SG, Malone JG, Gehrig SM, Spiers AJ, Rainey PB (2006) Genetics 173:515-526.
14. Bantinaki E, Kassen R, Knight CG, Robinson Z, Spiers AJ, Rainey PB (2007) Genetics 176:441-453.
15. Malone JG, Williams R, Christen M, Jenal U, Spiers AJ, Rainey PB (2007) Microbiology 153:980-994.
16. Spiers AJ, Kahn SG, Bohannon J, Travisano M, Rainey PB (2002) Genetics 161:33-46.
17. Baynham PJ, Wozniak DJ (1996) Mol Microbiol 22:97-108.
18. Arora SK, Ritchings BW, Almira EC, Lory S, Ramphal R (1997) J Bacteriol 179:5574-5581.
19. Tart AH, Blanks MT, Wozniak DJ (2006) J Bacteriol 188:6483-6489.
20. Manoil C (2000) Methods Enzymol 326:35-47.
21. Lizewski SE, Schurr JR, Jackson DW, Frisk A, Carterson AJ, Schurr MJ (2004) J Bacteriol 186:5672-5684.
22. Dumont MG, Murrell JC (2005) Nat Rev Microbiol 3:499-504.
23. Pernthaler J, Amann RI (2005) Microbiol Mol Biol Rev 69:440-461.
24. Wagner M, Nielsen PH, Loy A, Nielsen JL, Daims H (2006) Curr Opin Biotechnol 17:83-91.
25. Deretic V, Gill JF, Chakrabarty AM (1987) Nucleic Acids Res 15:4567-4581.
26. Baynham PJ, Brown AL, Hall LL, Wozniak DJ (1999) Mol Microbiol 33:1069-1080.
27. Roll-Hansen N (1998) Stud Hist Philos Sci C 29:165-187.
28. Kassen R, Rainey PB (2004) Annu Rev Microbiol 58:207-231.
29. Spiers AJ, Bohannon J, Gehrig SM, Rainey PB (2003) Mol Microbiol 50:15-27.
30. Ross P, Weinhouse H, Aloni Y, Michaeli D, Weinberger-Ohana P, Mayer R, Braun S, de Vroom E, van der Marel GA, van Boom JH, Benziman M (1987) Nature 325:279-281.
31. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab Press, Cold Spring Harbor, NY).
32. Bailey J, Manoil C (2002) Nat Biotechnol 20:839-842.
33. Fellay R, Krisch HM, Prentki P, Frey J (1989) Gene 76:215-226.
34. Rainey PB, Heithoff DM, Mahan MJ (1997) Mol Gen Genet 256:84-87.
35. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B (2000) Bioinformatics 16:944-945.
36. Stothard P, Wishart DS (2005) Bioinformatics 21:537-539.
37. Ma JF, Ochsner UA, Klotz MG, Nanayakkara VK, Howell ML, Johnson Z, Posey JE, Vasil ML, Monaco JJ, Hassett DJ (1999) J Bacteriol 181:3730-3742.
38. Kulesekara H, Lee V, Brencic A, Liberati N, Urbach J, Miyata S, Lee DG, Neely AN, Hyodo M, Hayakawa Y, et al. (2006) Proc Natl Acad Sci USA 103:2839-2844.