A molecular phylogeny of Salvia euphratica sensu lato (Salvia L., Lamiaceae) and its closely related species with a focus on the section Hymenosphace

Plant Systematics and Evolution

Volumn 301, Issue 10, 2015, Pages 2313-2323

  Dizkirici, Ayten ^a   Celep, Ferhat ^b   Kansu, Cigdem ^c   Kahraman, Ahmet ^d   Dogan, Musa ^c   Kaya, Zeki ^c  

^a YUZUNCU YIL UNIVERSITY   (Turkey)

^b GAZI UNIVERSITY   (Turkey)

^c MIDDLE EAST TECHNICAL UNIVERSITY   (Turkey)

^d USAK UNIVERSITY   (Turkey)

Author keywords

Hymenosphace; ITS; Lamiaceae; Molecular systematic; Phylogeny; Salvia

Indexed keywords

EID: 84947618017     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-015-1230-1     Document Type: Article

References (59)

1. Alziar G (1988–1993) Catalogue synonymique des Salvia L. du monde (Lamiaceae). I à VI. Biocosme Mésogéen, Nice 5:87–136; 6:79–115; 6: 163–204; 7:59–109; 9:413–497; 10:33–117
2. Artyukova EV, Gontcharov AA, Kozyrenko MM, Reunova GD, Zhuravlev YN (2005) Phylogenetic relationships of the far Eastern Araliaceae inferred from ITS sequences of nuclear rDNA. Russ J Genet 41:649–658
3. Baldwin BG (1992) Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Molec Phylogen Evol 1:3–16
4. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ (1995) The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann Missouri Bot Gard 82:247–277
5. Behçet L, Avlamaz D (2009) A new record for Turkey: Salvia aristata Aucher ex Benth. (Lamiaceae). Turkish J Bot 33:61–63
6. Bentham G (1832–1836) Salvia. In: Bentham G (eds) Labiatarum genera et species: or, a description of the genera and species of plants of the order Labiatae with their general history, characters, affinities, and geographical distribution, J Ridgway and Sons, London, pp 190–312
7. Bentham G (1836) Salvia. Ann Sci Nat, Bot 2:40
8. Bentham G (1848) Labiatae. In: De Candolle A (ed) Prodromus systematis naturalis regni vegetabilis 12. Treuttel and Würtz, Paris, pp 262–358
9. Briquet J (1897) Labiatae. In: Engler A, Prantl K (eds) Die natürlichen Pflanzenfamilien nebst ihrer Gattungen und wichtigen Arten. Engelmann, Leipzig, pp 183–380
10. Celep F, Doğan M (2010) Salvia ekimiana (Lamiaceae), a new species from Turkey. Ann Bot Fenn 47:63–66
11. Celep F, Doğan M, Bagherpour S, Kahraman A (2009) A new variety of Salvia sericeotomentosa (Lamiaceae) from South Anatolia, Turkey. Novon 19:432–435
12. Celep F, Doğan M, Kahraman A (2010) Re-evaluated conservation status of Salvia L. (sage) in Turkey I: the Mediterranean and the Aegean geographic regions. Turkish J Bot 34:201–214
13. Celep F, Kahraman A, Doğan M (2011a) A new taxon of the genus Salvia L. (Lamiaceae) from Turkey. Pl Ecol Evol 144:111–114
14. Celep F, Kahraman A, Doğan M (2011b) Taxonomic notes for Salvia aucheri (Lamiaceae) from Southern Anatolia. Turkey Novon 21:34–35
15. Celep F, Kahraman A, Atalay Z, Doğan M (2014) Morphology, anatomy, palynology, mericarp and trichome micromorphology of the rediscovered Turkish endemic Salvia quezelii (Lamiaceae) and their taxonomic implications. Pl Syst Evol 300:1945–1958
16. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molec Ecol 9:1657–1659
17. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
18. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
19. Gao T, Yao H, Song JY, Zhu YJ, Liu C, Chen SL (2010) Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family. BMC Evol Biol 10:324
20. Harley RM, Atkins S, Budantsey AL, Cantino PD, Conn BJ, Grayer R, de Kok R, Krestovskaja T, Morales R, Paton AJ, Ryding O, Upson T (2004) Labiatae. In: Kadereit JW (ed) The families and genera of vascular plants, vol 7. Springer, Berlin Heidelberg, pp 167–275
21. Hedge IC (1965) Studies in the Flora of Afghanistan III: an account of Salvia. Notes RBG Edinburgh 26:408
22. Hedge IC (1972) Salvia L. In: Tutin TG, Heywood VH, Burges NA, Valentine DH, Walters SM, Webb DA (eds) Flora Europaea 3. Cambridge University Press, Cambridge, pp 188–192
23. Hedge IC (1974) A revision of Salvia in Africa including Madagascar and the Canary Islands. Notes Roy Bot Gard Edinburgh 33:1–121
24. Hedge IC (1982) In: Davis PH (ed), Flora of Turkey and the East Aegean Islands: Salvia L., vol 7. University of Edinburgh Press, Edinburgh
25. Hedge IC (1982) In: Rechinger KH (ed), Flora Iranica: Salvia L., Akademische Druck und Verlagsanstalt, Graz, 150:403–476
26. Hsiao C, Chatterton NJ, Asay KH, Jensen KB (1995) Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences. Genome 38:221–223
27. Kahraman A, Celep F, Doğan M (2009) Morphology, anatomy and palynology of Salvia indica L. (Labiatae). World Appl Sci J 6:289–296
28. Kahraman A, Celep F, Dogan M, Bagherpour S (2010a) A taxonomic revision of Salvia euphratica sensu lato and its closely related species (sect. Hymenosphace, Lamiaceae) by using multivariate analysis. Turkish J Bot 34:261–276
29. Kahraman A, Celep F, Dogan M (2010b) Anatomy, trichome morphology and palynology of Salvia chrysophylla Stapf (Lamiaceae). S African J Bot 76:187–195
30. Kahraman A, Celep F, Dogan M (2010c) Morphology, anatomy, palynology and nutlet micromorphology of Salvia macrochlamys (Labiatae) in Turkey. Biologia (Bratislava) 65:219–227
31. Kahraman A, Celep F, Doğan M, Guerin GR, Bagherpour S (2011) Mericarp morphology and its systematic implications for the genus Salvia L. Section Hymenosphace Benth. (Lamiaceae) in Turkey. Pl Syst Evol 292:33–39
32. Lahaye R, Savolainen V, Barraclough TG, Duthoit S, Maurin O, Gigot G, Pupulin F, Warner-Pineda J, Bogarín D, van der Bank M, ed. Janzen, Daniel H (2008) DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci USA 150:2923–2928
33. Martin E, Çetin Ö, Kahraman A, Celep F, Doğan M (2011) A cytomorphological study in some taxa of the genus Salvia L. (Lamiaceae). Caryologia 64:272–287
34. Metcalfe CR, Chalk L (1950) Anatomy of the Dicotyledons, vol I. Oxford University Press, Oxford
35. Metcalfe CR, Chalk L (1972) Anatomy of the Dicotyledons, vol II. Oxford University Press, Oxford
36. Nakipoğlu M (1993) Karyological studies on Salvia L. species of Turkey I. Salvia fruticosa Miller, Salvia tometosa Miller, Salvia officinalis L., Salvia smyrnaea Boiss. (Lamiaceae). Turkish J Bot 17:21–25
37. Pleines T, Jakob SS, Blattnerl FR (2009) Application of non coding DNA regions in intraspecific analyses. Pl Syst Evol 282:281–294
38. Pobedimova EG (1954) In: Schischkin BK (ed) Flora of the USSR: Salvia L. vol. 21:178–260. Translated from Russian, Israel Prog Sci Transl, Jerusalem
39. Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16:37–45
40. Reales A, Riviera D, Palazon JA, Obon C (2004) Numerical taxonomy study of Salvia sect. Salvia L. (Labiatae). Bot J Linn Soc 145:353–371
41. Rechinger KH (1952) Labiatae Novae Orientalis. Öst Bot Zeitschr 99:48–52
42. Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W, Miller J, Siripun KC, Winder CT, Schilling EE, Small RL (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Amer J Bot 92:142–166
43. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of the three non-coding regions of chloroplast DNA. Pl Mol Biol 17:1105–1109
44. Takano A, Okada H (2011) Phylogenetic relationships among subgenera, species, and varieties of Japanese Salvia L. (Lamiaceae). J Pl Res 124:245–252
45. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molec Biol Evol 10:512–526
46. Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101:11030–11035
47. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA 5: molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molec Biol Evol 28:2731–2739
48. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132:619–633
49. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680
50. Walker JB, Sytsma KJ (2007) Staminal Evolution in the Genus Salvia (Lamiaceae): molecular Phylogenetic Evidence for Multiple Origins of the Staminal Lever. Ann Bot (Oxford) 100:375–391
51. Walker JB, Sytsma KJ, Treutlein J, Wink M (2004) Salvia (Lamiaceae) is not monophyletic: implications for the systematic, radiation, and ecological specializations of Salvia and tribe Mentheae. Amer J Bot 91:1115–1125
52. Wang XR, Tsumura Y, Yoshimaru H, Nagasaka K, Szmidt AE (1999) Phylogenetic relationships of Eurasian pines (Pinus, Pinaceae) based on chloroplast rbcL, matK, rpl20-rps18 spacer, and tnV intron sequences. Amer J Bot 86:1742–1753
53. Wang M, Zhao HX, Wang L, Wang T, Yang RW, Wang XL, Zhou YH, Ding CB, Zhang L (2013) Potential use of DNA barcoding for the identification of Salvia based on cpDNA and nrDNA sequences. Gene 528:206–215
54. Will M, Claßen-Bockhoff R (2014) Why Africa matters: evolution of Old World Salvia (Lamiaceae) in Africa. Ann Bot 114:61–83
55. Wojciechowski MF (2005) Astragalus (Fabaceae): a molecular phylogenetic perspective. Brittonia 57:382–396
56. Wojciechowski MF, Sanderson MJ, Baldwin BG, Donoghue MJ (1993) Monophyly of aneuploid Astragalus (Fabaceae): evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Amer J Bot 80:711–722
57. Xu H, Wang ZT, Cheng KT, Wu T, Gu LH, Hu ZB (2009) Comparison of rDNA ITS sequences and tanshinones between Salvia miltiorrhiza populations and Salvia species. Bot Stud (Taipei) 50:127–136
58. Yao H, Song J, Liu C, Luo K, Han J, Li Y, Pang X, Xu H, Zhu Y, Xiao P, Chen S (2010) Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals. PLoS ONE 5:e13102. doi:10.1371/journal.pone.0013102
59. Zhang Y, Wang Y, Li D (2008) Analysis of ITS sequences of some medicinal plants and their related species in Salvia. Acta Pharm Sin 42:1309–1313